# STOCKHOLM 1.0
#=GF ID RT-8
#=GF AC RF03029
#=GF DE RT-8 RNA
#=GF AU Weinberg Z; 0000-0002-6681-3624
#=GF GA 87.0
#=GF NC 42.2
#=GF TC 87.1
#=GF SE Weinberg Z
#=GF SS Published; PMID:28977401;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 28.55 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 28977401
#=GF RT Detection of 224 candidate structured RNAs by comparative analysis of
#=GF RT specific subsets of intergenic regions.
#=GF RA Weinberg Z, Lunse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR,
#=GF RA Sherlock ME, Breaker RR
#=GF RL Nucleic Acids Res. 2017;45:10811-10823.
#=GF CC Proteobacteria. Nearby to self-splicing intron genes
#=GF WK RT_RNA_motifs
#=GF SQ 9

URS0000D6BB9F_546264/1-96  ACGGUGCUUUUUAG----AAGUGCUUUGCUAUACUAGGGGCUGUUAAUUAUCUGAACUGAUAAUUAGGGACUACCGCAAUCCUAAGCUCCUAGUUUUGCU
URS0000D6BB9F_546263/1-96  ACGGUGCUUUUUAG----AAGUGCUUUGCUAUACUAGGGGCUGUUAAUUAUCUGAACUGAUAAUUAGGGACUACCGCAAUCCUAAGCUCCUAGUUUUGCU
URS0000D6BB9F_12908/1-96   ACGGUGCUUUUUAG----AAGUGCUUUGCUAUACUAGGGGCUGUUAAUUAUCUGAACUGAUAAUUAGGGACUACCGCAAUCCUAAGCUCCUAGUUUUGCU
URS0000D6BFC4_12908/1-96   ACGGUGCUUUUUAG----AAGUGCUUUGCUAUACUAGGGGCUGUUAAUUAUCUGAAUUGAUAAUUAGGGACUACCGCAAUCCUAAGCUCCUAGUUUUGCU
URS0000D6C28F_12908/1-96   ACGGUGCUUUUUAG----AAGUGCUUUGCUAUACUAGGAGCUGUUAAUUGUCUAAAAUGGCAAUUAGGGACUACCGAAAUCCUAAGCUCCUAGUUUUGCU
URS0000D6D00C_12908/1-85   AUGGUGU--UUUA-------ACACCCAGCUAUACUAAGGGCUGUAACAGA--UUAU----UCUGUUGGGACUACCGCAAUCCUAAGCCCUUAGUUUUGCU
URS0000D66627_272629/1-90  ACGGGUAUCCUAA-----GGUACCUAGGCUAUA-UAAAGACUGUUAACUAU-UCAA---AUAGUUAGGGACAACCGCAAUCCUUAGUCUUUAGUUUUGCU
URS0000D68F22_1311759/1-90 AUGGGUAUCCUAA-----GGUACCUAGGCUAUA-UAAAGACUGUUAACUAU-UCAA---AUAGUUAGGGACAACCGCAAUCCUUAGUCUUUAGUUUUGCU
URS0000D66F67_12908/1-96   AUGGUGCUCCUUAAUUGAGGGUGCUUGGCUAUACUGAGGGCUGUUAACUAC-UUAA---GUGGUUAGGGACUACCGCAAUCCUAAGCCCUUAGUUUUGCU
#=GC SS_cons               ::<<<<<<<_____....>>>>>>>:::::::::<<<<<<<<--<<<<<<<.____...>>>>>>>------------------>>>>>>>>::::::::
#=GC RF                    AcgGcgcucuUuAg....gagcgCcuuGCUAUACuagGgGCuGUuaacuau.UuAA...auaguuaGGGACuACCGcAAUCCUaaGCcCcuaGUUUUGCU
//
