INFERNAL1/a [1.1.4 | Dec 2020] NAME Rothia-sucC ACC RF03024 DESC Rothia-sucC RNA STATES 181 NODES 52 CLEN 59 W 90 ALPH RNA RF no CONS yes MAP yes DATE Mon Oct 1 21:56:10 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 28 EFFN 2.799316 CKSUM 1628775842 NULL 0.000 0.000 0.000 0.000 GA 64.50 TC 64.50 NC 44.60 EFP7GF -11.4617 0.71906 ECMLC 0.55944 -9.48180 1.35559 1600000 515553 0.002328 ECMGC 0.40461 -19.66254 -5.27961 1600000 134714 0.002969 ECMLI 0.57071 -6.49905 2.93181 1600000 261019 0.004597 ECMGI 0.45631 -13.95602 -1.86003 1600000 99811 0.004008 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 90 125 -7.266 -7.473 -0.042 -5.888 IL 1 1 2 1 4 1 17 92 127 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 16 92 127 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 16 90 125 -8.262 -0.017 -6.916 -0.557 -1.899 1.371 -1.104 D 4 2 3 5 3 0 11 88 123 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 16 91 126 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - a - - - ML 6 5 3 8 3 1 15 89 124 -8.262 -0.017 -6.916 0.743 -0.433 -1.124 0.172 D 7 5 3 8 3 0 10 87 122 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 15 90 125 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 14 88 123 -8.262 -0.017 -6.916 1.241 -1.034 -1.358 -0.399 D 10 8 3 11 3 0 9 86 121 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 14 89 124 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - c - - - ML 12 11 3 14 3 1 14 87 122 -8.262 -0.017 -6.916 0.222 0.669 -1.370 -0.223 D 13 11 3 14 3 0 9 85 120 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 13 88 123 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 13 86 121 -8.262 -0.017 -6.916 -2.472 1.774 -3.301 -1.743 D 16 14 3 17 3 0 8 84 119 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 12 87 122 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 12 85 120 -8.262 -0.017 -6.916 -2.051 -1.951 -2.808 1.747 D 19 17 3 20 3 0 7 83 118 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 11 86 121 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - C - - - ML 21 20 3 23 3 1 11 84 119 -8.262 -0.017 -6.916 -1.305 1.559 -2.458 -1.100 D 22 20 3 23 3 0 6 82 117 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 10 85 120 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - a - - - ML 24 23 3 26 3 1 10 83 118 -8.262 -0.017 -6.916 0.810 -0.120 -1.188 -0.173 D 25 23 3 26 3 0 5 81 116 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 10 84 119 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - u - - - ML 27 26 3 29 3 1 9 82 117 -8.262 -0.077 -4.363 -0.400 -0.098 -1.420 0.952 D 28 26 3 29 3 0 5 80 115 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 9 83 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - c - - - ML 30 29 3 32 3 1 9 81 116 -2.385 -0.432 -3.896 -0.353 0.524 0.001 -0.362 D 31 29 3 32 3 0 4 80 115 -6.718 -2.231 -0.363 IL 32 32 3 32 3 1 9 81 116 -2.041 -0.475 -4.741 0.000 0.000 0.000 0.000 [ MATL 11 ] 12 - A - - - ML 33 32 3 35 3 1 9 79 115 -2.298 -0.345 -6.770 1.777 -2.679 -2.280 -2.252 D 34 32 3 35 3 0 4 80 115 -0.917 -2.756 -1.634 IL 35 35 3 35 3 1 8 81 116 -0.915 -1.149 -5.741 0.000 0.000 0.000 0.000 [ MATL 12 ] 17 - G - - - ML 36 35 3 38 3 1 8 77 112 -8.262 -0.017 -6.916 -2.202 -3.508 1.832 -2.893 D 37 35 3 38 3 0 2 75 110 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 6 78 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 18 - A - - - ML 39 38 3 41 3 1 7 76 111 -8.262 -0.017 -6.916 1.822 -2.975 -2.548 -2.580 D 40 38 3 41 3 0 1 74 109 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 6 77 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 19 - C - - - ML 42 41 3 44 3 1 6 75 110 -8.262 -0.017 -6.916 -2.076 1.673 -2.916 -1.177 D 43 41 3 44 3 0 1 73 108 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 5 76 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 20 - C - - - ML 45 44 3 47 3 1 6 74 109 -8.262 -0.017 -6.916 -2.472 1.774 -3.301 -1.743 D 46 44 3 47 3 0 0 72 107 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 4 75 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 21 - A - - - ML 48 47 3 50 3 1 5 73 108 -8.262 -0.017 -6.916 1.822 -2.975 -2.548 -2.580 D 49 47 3 50 3 0 0 71 106 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 4 74 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 22 - G - - - ML 51 50 3 53 3 1 4 72 107 -8.635 -0.015 -6.953 0.048 -1.961 1.219 -1.389 D 52 50 3 53 3 0 0 70 106 -5.620 -0.734 -1.403 IL 53 53 3 53 3 1 2 72 108 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 71 - A - - MR 54 53 3 56 3 1 4 71 106 -8.635 -0.015 -6.953 1.822 -2.975 -2.548 -2.580 D 55 53 3 56 3 0 0 69 104 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 2 71 107 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 70 - G - - MR 57 56 3 59 3 1 3 70 105 -8.635 -0.015 -6.953 -2.202 -3.508 1.832 -2.893 D 58 56 3 59 3 0 0 68 103 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 1 70 106 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 69 - G - - MR 60 59 3 62 3 1 3 69 104 -8.635 -0.015 -6.953 -2.202 -3.508 1.832 -2.893 D 61 59 3 62 3 0 0 67 102 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 1 69 105 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 68 - A - - MR 63 62 3 65 3 1 2 68 103 -8.635 -0.015 -6.953 1.822 -2.975 -2.548 -2.580 D 64 62 3 65 3 0 0 66 101 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 1 68 104 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 67 - A - - MR 66 65 3 68 3 1 2 67 102 -8.635 -0.015 -6.953 1.822 -2.975 -2.548 -2.580 D 67 65 3 68 3 0 0 65 100 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 1 67 103 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 66 - G - - MR 69 68 3 71 3 1 2 66 101 -8.635 -0.015 -6.953 -2.202 -3.508 1.832 -2.893 D 70 68 3 71 3 0 0 64 99 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 1 66 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 65 - A - - MR 72 71 3 74 3 1 1 65 100 -8.635 -0.015 -6.953 1.822 -2.975 -2.548 -2.580 D 73 71 3 74 3 0 0 63 98 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 1 65 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 64 - A - - MR 75 74 3 77 3 1 1 64 99 -8.635 -0.015 -6.953 1.695 -2.282 -2.089 -1.641 D 76 74 3 77 3 0 0 62 97 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 1 64 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 63 - G - - MR 78 77 3 80 3 1 1 63 98 -8.635 -0.015 -6.953 -2.202 -3.508 1.832 -2.893 D 79 77 3 80 3 0 0 61 96 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 1 63 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 62 - a - - MR 81 80 3 83 3 1 1 62 97 -8.635 -0.015 -6.953 0.598 0.460 -1.343 -0.480 D 82 80 3 83 3 0 0 60 95 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 62 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 61 - A - - MR 84 83 3 86 3 1 1 61 96 -8.635 -0.015 -6.953 1.822 -2.975 -2.548 -2.580 D 85 83 3 86 3 0 0 59 94 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 61 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 60 - G - - MR 87 86 3 89 3 1 1 60 95 -8.635 -0.015 -6.953 -2.202 -3.508 1.832 -2.893 D 88 86 3 89 3 0 0 58 93 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 60 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 59 - C - - MR 90 89 3 92 3 1 1 59 94 -8.635 -0.015 -6.953 -2.472 1.774 -3.301 -1.743 D 91 89 3 92 3 0 0 57 92 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 59 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 58 - U - - MR 93 92 3 95 3 1 1 58 93 -8.635 -0.015 -6.953 -2.051 -1.951 -2.808 1.747 D 94 92 3 95 3 0 0 56 91 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 58 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 57 - U - - MR 96 95 3 98 3 1 1 57 92 -8.635 -0.015 -6.953 -2.051 -1.951 -2.808 1.747 D 97 95 3 98 3 0 0 55 90 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 57 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 56 - C - - MR 99 98 3 101 3 1 1 56 91 -8.635 -0.015 -6.953 -2.472 1.774 -3.301 -1.743 D 100 98 3 101 3 0 0 54 89 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 1 56 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 55 - A - - MR 102 101 3 104 3 1 1 55 90 -8.635 -0.015 -6.953 1.822 -2.975 -2.548 -2.580 D 103 101 3 104 3 0 0 53 88 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 55 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 54 - C - - MR 105 104 3 107 3 1 1 54 89 -8.635 -0.015 -6.953 -2.472 1.774 -3.301 -1.743 D 106 104 3 107 3 0 0 52 87 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 1 54 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 53 - C - - MR 108 107 3 110 3 1 1 53 88 -8.635 -0.015 -6.953 -1.083 1.001 -1.922 0.336 D 109 107 3 110 3 0 0 51 86 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 53 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 52 - A - - MR 111 110 3 113 5 1 1 52 87 -7.357 -0.032 -7.172 -7.384 -8.276 1.822 -2.975 -2.548 -2.580 D 112 110 3 113 5 0 0 50 86 -5.352 -0.707 -2.978 -4.409 -2.404 IR 113 113 3 113 5 1 1 52 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 23 51 G C - - MP 114 113 3 118 6 2 2 51 86 -9.237 -9.177 -0.019 -7.953 -8.233 -8.628 -5.324 -3.377 -5.502 -0.202 -6.046 -4.913 -1.266 -5.769 -4.687 3.751 -4.986 -1.104 -1.637 -4.843 -3.338 -4.370 ML 115 113 3 118 6 1 1 49 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 3 118 6 1 1 49 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 3 118 6 0 0 46 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 50 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 50 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 24 50 C G - - MP 120 119 6 124 6 2 2 49 84 -9.237 -9.177 -0.019 -7.953 -8.233 -8.628 -5.211 -5.172 -4.784 -1.357 -3.373 -5.108 3.713 -4.249 -4.863 -1.194 -5.045 -3.136 0.064 -5.234 -1.104 -3.684 ML 121 119 6 124 6 1 1 47 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 47 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 44 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 48 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 48 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 25 49 C G - - MP 126 125 6 130 6 2 2 47 82 -9.237 -9.177 -0.019 -7.953 -8.233 -8.628 -4.828 -4.830 -4.464 -1.006 -3.087 -4.825 3.597 -3.931 -4.521 -0.823 -4.759 -2.833 0.419 -4.855 -0.296 -3.342 ML 127 125 6 130 6 1 1 45 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 45 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 42 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 46 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 46 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 26 48 G C - - MP 132 131 6 136 6 2 2 45 80 -9.237 -9.177 -0.019 -7.953 -8.233 -8.628 -5.324 -3.377 -5.502 -0.202 -6.046 -4.913 -1.266 -5.769 -4.687 3.751 -4.986 -1.104 -1.637 -4.843 -3.338 -4.370 ML 133 131 6 136 6 1 1 43 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 43 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 40 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 44 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 44 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 27 47 c g - - MP 138 137 6 142 6 2 2 43 78 -9.237 -9.177 -0.019 -7.953 -8.233 -8.628 -3.032 -2.950 -3.098 1.862 -2.539 -3.859 2.127 -3.073 -3.122 0.897 -3.618 -1.033 1.185 -3.263 1.077 -2.093 ML 139 137 6 142 6 1 1 41 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 41 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 38 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 42 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 42 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 28 46 c g - - MP 144 143 6 148 6 2 2 41 76 -9.237 -9.177 -0.019 -7.953 -8.233 -8.628 -3.493 -3.060 -3.472 0.624 -2.889 -4.173 2.395 -3.406 -3.530 2.249 -3.969 -0.891 1.031 -3.593 -0.233 -2.369 ML 145 143 6 148 6 1 1 39 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 39 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 36 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 40 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 40 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 29 45 g c - - MP 150 149 6 154 6 2 2 39 74 -9.237 -9.177 -0.129 -7.953 -8.233 -3.745 -3.411 -2.843 -3.403 0.790 -3.060 -4.116 1.488 -3.472 -3.495 2.490 -3.932 -0.648 1.826 -3.481 -0.678 -2.332 ML 151 149 6 154 6 1 1 37 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 37 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 35 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 39 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 38 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 30 44 c g - - MP 156 155 6 160 6 2 2 37 72 -9.130 -9.069 -0.021 -7.845 -8.125 -8.520 -3.056 -2.433 -3.161 0.978 -2.952 -3.895 1.976 -3.239 -3.125 1.789 -3.565 1.503 0.932 -3.278 -0.642 -2.089 ML 157 155 6 160 6 1 1 36 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 35 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 34 69 -10.272 -8.971 -4.768 -5.450 -5.467 -0.128 IL 160 160 5 160 6 1 1 37 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 36 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 31 43 c g - - MP 162 161 6 166 4 2 2 35 70 -2.923 -7.212 -0.250 -5.626 -2.867 -2.702 -2.959 1.475 -2.480 -3.760 2.319 -2.968 -2.973 1.268 -3.485 -0.445 1.368 -3.097 0.149 -1.926 ML 163 161 6 166 4 1 1 34 69 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 4 1 1 33 69 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 165 161 6 166 4 0 0 34 69 -0.801 -5.418 -3.434 -1.689 IL 166 166 5 166 4 1 1 34 70 -2.990 -2.763 -0.582 -4.093 0.000 0.000 0.000 0.000 IR 167 167 6 167 3 1 1 35 70 -1.558 -0.718 -4.258 0.000 0.000 0.000 0.000 [ MATL 47 ] 33 - A - - - ML 168 167 6 170 3 1 1 33 68 -8.235 -0.017 -6.889 1.229 -0.765 -1.347 -0.568 D 169 167 6 170 3 0 0 31 66 -6.456 -1.207 -0.848 IL 170 170 3 170 3 1 1 34 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 34 - C - - - ML 171 170 3 173 3 1 1 32 67 -8.262 -0.017 -6.916 -1.916 1.618 -2.763 -0.951 D 172 170 3 173 3 0 0 29 64 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 33 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 35 - C - - - ML 174 173 3 176 3 1 1 31 66 -1.806 -0.503 -6.916 -1.234 1.540 -2.411 -1.062 D 175 173 3 176 3 0 0 24 59 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 32 67 -0.755 -1.354 -5.962 0.000 0.000 0.000 0.000 [ MATL 50 ] 41 - A - - - ML 177 176 3 179 2 1 1 1 1 * 0.000 1.607 -1.598 -1.835 -1.541 D 178 176 3 179 2 0 0 0 0 * 0.000 IL 179 179 3 179 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 51 ] - - - - - - E 180 179 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Rothia-sucC ACC RF03024 DESC Rothia-sucC RNA LENG 59 MAXL 139 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Oct 1 21:56:10 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 28 EFFN 3.681152 CKSUM 1628775842 STATS LOCAL MSV -7.5291 0.71906 STATS LOCAL VITERBI -8.7166 0.71906 STATS LOCAL FORWARD -3.4319 0.71906 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.23666 1.24069 1.34881 1.82689 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 0.00000 * 1 1.86547 2.86931 0.37671 2.27962 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 2 0.83537 1.69900 2.24966 1.28019 2 a - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 3 0.47097 2.17719 2.46820 1.72877 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 4 1.23675 0.85624 2.46640 1.60930 4 c - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 5 3.50400 0.10614 4.05968 2.93053 5 C - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 6 3.13827 3.01584 3.67198 0.12532 6 U - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 7 2.49886 0.23206 3.39351 2.39324 7 C - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 8 0.78405 1.44951 2.31392 1.56117 8 a - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 9 1.72554 1.44176 2.48649 0.68874 9 U - - : 1.38629 1.38629 1.38629 1.38629 0.07773 4.22611 2.81043 1.46634 0.26236 1.09861 0.40547 10 1.71931 0.95646 1.34813 1.73255 10 c - - : 1.38629 1.38629 1.38629 1.38629 0.28006 1.47422 4.17947 0.12873 2.11372 0.39577 1.11830 11 0.10877 3.56947 3.26246 3.30775 12 A - - : 1.38629 1.38629 1.38629 1.38629 0.32670 1.33145 4.22611 1.04230 0.43486 1.09861 0.40547 12 3.24353 4.18472 0.08099 3.74878 17 G - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 13 0.08620 3.79020 3.46452 3.55058 18 A - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 14 3.16241 0.16875 3.74008 2.41679 19 C - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 15 3.50400 0.10614 4.05968 2.93053 20 C - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 16 0.08620 3.79020 3.46452 3.55058 21 A - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 17 1.37812 2.94768 0.48012 2.56685 22 G - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 18 2.95030 3.78365 0.10445 3.72466 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 19 3.78466 0.13392 3.62229 2.57828 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 20 3.48029 0.20987 3.29583 2.10803 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 21 2.94848 3.78102 0.10472 3.72111 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 22 1.30629 1.21493 1.99491 1.21598 27 c - - < 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 23 2.26329 1.01089 1.05614 1.69118 28 c - - < 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 24 2.12378 1.71113 0.88267 1.25148 29 g - - < 1.38629 1.38629 1.38629 1.38629 0.23016 4.22611 1.65555 1.46634 0.26236 1.09861 0.40547 25 1.97337 1.29057 0.86875 1.79322 30 g - - < 1.38629 1.38629 1.38629 1.38629 0.03612 4.03206 4.03206 1.46634 0.26236 0.14236 2.01976 26 1.57691 1.05430 1.63721 1.38457 31 c - - < 1.38629 1.38629 1.38629 1.38629 0.12551 2.26972 4.22611 0.26212 1.46715 1.09861 0.40547 27 0.47739 1.95118 2.46433 1.88105 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 28 3.02756 0.20297 3.61681 2.22199 34 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 29 2.43934 0.24391 3.35682 2.36048 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.42877 1.09637 4.22611 1.15369 0.37902 1.09861 0.40547 30 0.22151 2.60271 2.87174 2.68796 41 A - - _ 1.38629 1.38629 1.38629 1.38629 0.18920 4.22611 1.84661 1.46634 0.26236 1.09861 0.40547 31 1.68788 1.85092 0.89382 1.39067 43 g - - > 1.38629 1.38629 1.38629 1.38629 0.07566 4.07160 2.88570 1.46634 0.26236 2.54940 0.08135 32 2.02394 1.51051 1.18489 1.07503 44 u - - > 1.38629 1.38629 1.38629 1.38629 0.03612 4.03206 4.03206 1.46634 0.26236 0.14236 2.01976 33 1.37799 0.95581 1.56050 1.87481 45 c - - > 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 34 1.99860 1.12769 0.89672 2.01898 46 g - - > 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 35 1.87390 2.16027 0.83184 1.21761 47 g - - > 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 36 3.89491 0.12590 3.63162 2.63835 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 37 2.54025 3.45508 0.16182 3.24482 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 38 2.86497 3.79468 0.11417 3.56060 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 39 3.92445 0.12437 3.64598 2.64371 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 40 0.08620 3.79020 3.46452 3.55058 52 A - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 41 2.32118 0.62255 2.92677 1.16573 53 C - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 42 3.50400 0.10614 4.05968 2.93053 54 C - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 43 0.08620 3.79020 3.46452 3.55058 55 A - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 44 3.50400 0.10614 4.05968 2.93053 56 C - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 45 3.13827 3.01584 3.67198 0.12532 57 U - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 46 3.13827 3.01584 3.67198 0.12532 58 U - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 47 3.50400 0.10614 4.05968 2.93053 59 C - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 48 3.24353 4.18472 0.08099 3.74878 60 G - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 49 0.08620 3.79020 3.46452 3.55058 61 A - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 50 0.94112 1.00730 2.45948 1.83805 62 a - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 51 3.24353 4.18472 0.08099 3.74878 63 G - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 52 0.16541 3.19924 3.07692 2.72478 64 A - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 53 0.08620 3.79020 3.46452 3.55058 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 54 3.24353 4.18472 0.08099 3.74878 66 G - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 55 0.08620 3.79020 3.46452 3.55058 67 A - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 56 0.08620 3.79020 3.46452 3.55058 68 A - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 57 3.24353 4.18472 0.08099 3.74878 69 G - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 58 3.24353 4.18472 0.08099 3.74878 70 G - - : 1.38629 1.38629 1.38629 1.38629 0.02965 4.22611 4.22611 1.46634 0.26236 1.09861 0.40547 59 0.08620 3.79020 3.46452 3.55058 71 A - - : 1.38629 1.38629 1.38629 1.38629 0.01494 4.21139 * 1.46634 0.26236 0.00000 * //