INFERNAL1/a [1.1.5 | Sep 2023] NAME Rothia-sucC ACC RF03024 DESC Rothia-sucC RNA STATES 181 NODES 52 CLEN 59 W 88 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 03:08:39 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03024/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 28 EFFN 2.826660 CKSUM 1628775842 NULL 0.000 0.000 0.000 0.000 GA 64.50 TC 64.80 NC 44.40 EFP7GF -11.5049 0.71906 ECMLC 0.56166 -9.43597 1.34944 1600000 512910 0.002340 ECMGC 0.40927 -19.53078 -5.30715 1600000 134964 0.002964 ECMLI 0.56515 -6.61058 2.89987 1600000 259085 0.004632 ECMGI 0.45354 -14.10035 -1.93059 1600000 99802 0.004008 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 88 120 -7.275 -7.482 -0.042 -5.897 IL 1 1 2 1 4 1 17 90 122 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 16 90 122 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 16 88 120 -8.271 -0.017 -6.925 -0.473 -1.817 1.320 -1.004 D 4 2 3 5 3 0 11 86 118 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 15 89 121 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - a - - - ML 6 5 3 8 3 1 15 87 119 -8.271 -0.017 -6.925 0.793 -0.402 -1.142 0.080 D 7 5 3 8 3 0 10 85 117 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 15 88 120 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 14 86 118 -8.271 -0.017 -6.925 1.195 -0.965 -1.326 -0.323 D 10 8 3 11 3 0 9 84 116 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 14 87 119 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - c - - - ML 12 11 3 14 3 1 13 85 117 -8.271 -0.017 -6.925 0.125 0.737 -1.410 -0.207 D 13 11 3 14 3 0 9 83 115 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 13 86 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 13 84 116 -8.271 -0.017 -6.925 -2.493 1.777 -3.321 -1.759 D 16 14 3 17 3 0 8 82 114 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 12 85 117 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 12 83 115 -8.271 -0.017 -6.925 -2.068 -1.965 -2.825 1.750 D 19 17 3 20 3 0 7 81 113 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 11 84 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - C - - - ML 21 20 3 23 3 1 11 82 114 -8.271 -0.017 -6.925 -1.235 1.542 -2.420 -1.069 D 22 20 3 23 3 0 6 80 112 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 10 83 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - a - - - ML 24 23 3 26 3 1 10 81 113 -8.271 -0.017 -6.925 0.805 -0.135 -1.185 -0.147 D 25 23 3 26 3 0 5 79 111 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 10 82 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 9 80 112 -8.271 -0.082 -4.262 -0.386 -0.218 -1.428 1.002 D 28 26 3 29 3 0 5 78 110 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 9 81 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - c - - - ML 30 29 3 32 3 1 9 79 111 -2.415 -0.440 -3.734 -0.310 0.390 0.147 -0.367 D 31 29 3 32 3 0 4 77 110 -6.761 -2.274 -0.351 IL 32 32 3 32 3 1 9 79 111 -2.032 -0.478 -4.732 0.000 0.000 0.000 0.000 [ MATL 11 ] 12 - A - - - ML 33 32 3 35 3 1 9 77 109 -2.316 -0.340 -6.761 1.774 -2.660 -2.263 -2.232 D 34 32 3 35 3 0 4 77 110 -0.842 -2.844 -1.723 IL 35 35 3 35 3 1 8 78 111 -0.949 -1.111 -5.727 0.000 0.000 0.000 0.000 [ MATL 12 ] 17 - G - - - ML 36 35 3 38 3 1 8 74 107 -8.271 -0.017 -6.925 -2.219 -3.527 1.834 -2.912 D 37 35 3 38 3 0 2 73 105 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 6 75 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 18 - A - - - ML 39 38 3 41 3 1 7 73 106 -8.271 -0.017 -6.925 1.824 -2.992 -2.564 -2.598 D 40 38 3 41 3 0 1 72 104 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 6 74 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 19 - C - - - ML 42 41 3 44 3 1 6 72 105 -8.271 -0.017 -6.925 -2.057 1.665 -2.899 -1.137 D 43 41 3 44 3 0 0 71 103 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 5 73 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 20 - C - - - ML 45 44 3 47 3 1 6 71 104 -8.271 -0.017 -6.925 -2.493 1.777 -3.321 -1.759 D 46 44 3 47 3 0 0 70 102 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 4 72 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 21 - A - - - ML 48 47 3 50 3 1 5 70 103 -8.271 -0.017 -6.925 1.824 -2.992 -2.564 -2.598 D 49 47 3 50 3 0 0 69 101 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 4 71 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 22 - G - - - ML 51 50 3 53 3 1 4 69 102 -8.643 -0.015 -6.961 -0.083 -2.045 1.295 -1.475 D 52 50 3 53 3 0 0 68 100 -5.620 -0.734 -1.403 IL 53 53 3 53 3 1 2 70 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 71 - A - - MR 54 53 3 56 3 1 4 68 101 -8.643 -0.015 -6.961 1.824 -2.992 -2.564 -2.598 D 55 53 3 56 3 0 0 67 99 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 2 69 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 70 - G - - MR 57 56 3 59 3 1 3 67 100 -8.643 -0.015 -6.961 -2.219 -3.527 1.834 -2.912 D 58 56 3 59 3 0 0 66 98 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 1 68 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 69 - G - - MR 60 59 3 62 3 1 3 66 99 -8.643 -0.015 -6.961 -2.219 -3.527 1.834 -2.912 D 61 59 3 62 3 0 0 65 97 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 1 67 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 68 - A - - MR 63 62 3 65 3 1 2 65 98 -8.643 -0.015 -6.961 1.824 -2.992 -2.564 -2.598 D 64 62 3 65 3 0 0 64 96 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 1 66 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 67 - A - - MR 66 65 3 68 3 1 2 65 97 -8.643 -0.015 -6.961 1.824 -2.992 -2.564 -2.598 D 67 65 3 68 3 0 0 63 95 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 1 65 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 66 - G - - MR 69 68 3 71 3 1 2 64 96 -8.643 -0.015 -6.961 -2.219 -3.527 1.834 -2.912 D 70 68 3 71 3 0 0 62 94 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 1 64 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 65 - A - - MR 72 71 3 74 3 1 1 63 95 -8.643 -0.015 -6.961 1.824 -2.992 -2.564 -2.598 D 73 71 3 74 3 0 0 61 93 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 1 63 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 64 - A - - MR 75 74 3 77 3 1 1 62 94 -8.643 -0.015 -6.961 1.704 -2.320 -2.119 -1.688 D 76 74 3 77 3 0 0 60 92 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 1 62 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 63 - G - - MR 78 77 3 80 3 1 1 61 93 -8.643 -0.015 -6.961 -2.219 -3.527 1.834 -2.912 D 79 77 3 80 3 0 0 59 91 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 1 61 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 62 - a - - MR 81 80 3 83 3 1 1 60 92 -8.643 -0.015 -6.961 0.622 0.438 -1.344 -0.489 D 82 80 3 83 3 0 0 58 90 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 60 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 61 - A - - MR 84 83 3 86 3 1 1 59 91 -8.643 -0.015 -6.961 1.824 -2.992 -2.564 -2.598 D 85 83 3 86 3 0 0 57 89 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 59 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 60 - G - - MR 87 86 3 89 3 1 1 58 90 -8.643 -0.015 -6.961 -2.219 -3.527 1.834 -2.912 D 88 86 3 89 3 0 0 56 88 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 58 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 59 - C - - MR 90 89 3 92 3 1 1 57 89 -8.643 -0.015 -6.961 -2.493 1.777 -3.321 -1.759 D 91 89 3 92 3 0 0 55 87 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 57 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 58 - U - - MR 93 92 3 95 3 1 1 56 88 -8.643 -0.015 -6.961 -2.068 -1.965 -2.825 1.750 D 94 92 3 95 3 0 0 54 86 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 56 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 57 - U - - MR 96 95 3 98 3 1 1 55 87 -8.643 -0.015 -6.961 -2.068 -1.965 -2.825 1.750 D 97 95 3 98 3 0 0 53 85 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 55 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 56 - C - - MR 99 98 3 101 3 1 1 54 86 -8.643 -0.015 -6.961 -2.493 1.777 -3.321 -1.759 D 100 98 3 101 3 0 0 52 84 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 1 54 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 55 - A - - MR 102 101 3 104 3 1 1 53 85 -8.643 -0.015 -6.961 1.824 -2.992 -2.564 -2.598 D 103 101 3 104 3 0 0 51 83 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 53 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 54 - C - - MR 105 104 3 107 3 1 1 52 84 -8.643 -0.015 -6.961 -2.493 1.777 -3.321 -1.759 D 106 104 3 107 3 0 0 50 82 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 1 52 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 53 - c - - MR 108 107 3 110 3 1 1 51 83 -8.643 -0.015 -6.961 -1.059 0.943 -1.896 0.410 D 109 107 3 110 3 0 0 49 81 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 51 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 52 - A - - MR 111 110 3 113 5 1 1 50 82 -7.364 -0.032 -7.180 -7.392 -8.283 1.824 -2.992 -2.564 -2.598 D 112 110 3 113 5 0 0 48 80 -5.352 -0.707 -2.978 -4.409 -2.404 IR 113 113 3 113 5 1 1 50 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 23 51 G C - - MP 114 113 3 118 6 2 2 49 81 -9.241 -9.181 -0.019 -7.957 -8.237 -8.632 -5.340 -3.385 -5.521 -0.214 -6.069 -4.919 -1.284 -5.788 -4.696 3.754 -4.995 -1.113 -1.655 -4.853 -3.358 -4.389 ML 115 113 3 118 6 1 1 47 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 3 118 6 1 1 47 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 3 118 6 0 0 44 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 48 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 48 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 24 50 C G - - MP 120 119 6 124 6 2 2 47 79 -9.241 -9.181 -0.019 -7.957 -8.237 -8.632 -5.230 -5.193 -4.800 -1.377 -3.386 -5.121 3.716 -4.264 -4.880 -1.215 -5.059 -3.157 0.049 -5.251 -1.117 -3.700 ML 121 119 6 124 6 1 1 45 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 45 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 42 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 46 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 46 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 25 49 C G - - MP 126 125 6 130 6 2 2 45 77 -9.241 -9.181 -0.019 -7.957 -8.237 -8.632 -4.805 -4.808 -4.445 -0.983 -3.070 -4.809 3.586 -3.911 -4.499 -0.801 -4.741 -2.811 0.441 -4.833 -0.225 -3.321 ML 127 125 6 130 6 1 1 43 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 43 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 40 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 44 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 44 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 26 48 G C - - MP 132 131 6 136 6 2 2 43 75 -9.241 -9.181 -0.019 -7.957 -8.237 -8.632 -5.340 -3.385 -5.521 -0.214 -6.069 -4.919 -1.284 -5.788 -4.696 3.754 -4.995 -1.113 -1.655 -4.853 -3.358 -4.389 ML 133 131 6 136 6 1 1 41 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 41 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 38 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 42 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 42 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 27 47 c g - - MP 138 137 6 142 6 2 2 41 73 -9.241 -9.181 -0.019 -7.957 -8.237 -8.632 -3.032 -2.950 -3.097 1.893 -2.546 -3.857 2.057 -3.078 -3.124 0.893 -3.619 -1.037 1.165 -3.263 1.188 -2.098 ML 139 137 6 142 6 1 1 39 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 39 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 36 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 40 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 40 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 28 46 c g - - MP 144 143 6 148 6 2 2 39 71 -9.241 -9.181 -0.019 -7.957 -8.237 -8.632 -3.490 -3.051 -3.470 0.630 -2.898 -4.171 2.373 -3.411 -3.531 2.270 -3.969 -0.881 1.024 -3.588 -0.211 -2.369 ML 145 143 6 148 6 1 1 37 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 37 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 34 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 38 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 38 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 29 45 g c - - MP 150 149 6 154 6 2 2 37 69 -9.241 -9.181 -0.112 -7.957 -8.237 -3.971 -3.406 -2.854 -3.399 0.781 -3.041 -4.115 1.520 -3.461 -3.489 2.465 -3.929 -0.664 1.842 -3.481 -0.661 -2.328 ML 151 149 6 154 6 1 1 35 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 35 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 32 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 36 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 36 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 30 44 c g - - MP 156 155 6 160 6 2 2 35 67 -9.150 -9.089 -0.020 -7.866 -8.146 -8.541 -3.077 -2.466 -3.181 0.951 -2.953 -3.916 2.027 -3.251 -3.145 1.768 -3.587 1.480 0.937 -3.298 -0.641 -2.107 ML 157 155 6 160 6 1 1 33 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 33 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 31 63 -10.145 -8.843 -4.640 -5.323 -5.340 -0.141 IL 160 160 5 160 6 1 1 34 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 34 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 31 43 c g - - MP 162 161 6 166 4 2 2 33 65 -2.818 -7.264 -0.265 -5.678 -2.860 -2.703 -2.955 1.517 -2.487 -3.759 2.302 -2.971 -2.970 1.254 -3.484 -0.435 1.356 -3.092 0.169 -1.927 ML 163 161 6 166 4 1 1 32 64 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 4 1 1 31 63 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 165 161 6 166 4 0 0 31 63 -0.900 -5.295 -3.311 -1.565 IL 166 166 5 166 4 1 1 32 64 -2.952 -2.982 -0.558 -3.946 0.000 0.000 0.000 0.000 IR 167 167 6 167 3 1 1 32 64 -1.518 -0.744 -4.219 0.000 0.000 0.000 0.000 [ MATL 47 ] 33 - A - - - ML 168 167 6 170 3 1 1 30 63 -8.240 -0.017 -6.894 1.180 -0.679 -1.315 -0.498 D 169 167 6 170 3 0 0 28 61 -6.482 -1.174 -0.874 IL 170 170 3 170 3 1 1 31 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 34 - C - - - ML 171 170 3 173 3 1 1 29 62 -8.271 -0.017 -6.925 -1.880 1.603 -2.729 -0.889 D 172 170 3 173 3 0 0 27 59 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 30 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 35 - C - - - ML 174 173 3 176 3 1 1 28 61 -1.854 -0.484 -6.925 -1.172 1.524 -2.378 -1.035 D 175 173 3 176 3 0 0 22 54 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 30 62 -0.826 -1.257 -5.843 0.000 0.000 0.000 0.000 [ MATL 50 ] 41 - A - - - ML 177 176 3 179 2 1 1 1 1 * 0.000 1.591 -1.523 -1.810 -1.495 D 178 176 3 179 2 0 0 0 0 * 0.000 IL 179 179 3 179 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 51 ] - - - - - - E 180 179 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Rothia-sucC ACC RF03024 DESC Rothia-sucC RNA LENG 59 MAXL 138 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 03:08:39 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03024/CM NSEQ 28 EFFN 3.729004 CKSUM 1628775842 STATS LOCAL MSV -7.4571 0.71906 STATS LOCAL VITERBI -8.6894 0.71906 STATS LOCAL FORWARD -3.4610 0.71906 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.23824 1.24526 1.34590 1.82056 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 0.00000 * 1 1.80046 2.80879 0.40946 2.20282 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 2 0.79753 1.67303 2.26828 1.35328 2 a - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 3 0.50245 2.12351 2.44179 1.66952 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 4 1.31314 0.80618 2.50103 1.59718 4 c - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 5 3.52302 0.10422 4.07725 2.94675 5 C - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 6 3.15434 3.02943 3.68842 0.12332 6 U - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 7 2.44122 0.24228 3.36694 2.36857 7 C - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 8 0.78814 1.46130 2.31200 1.54033 8 a - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 9 1.71415 1.53754 2.49467 0.64922 9 U - - : 1.38629 1.38629 1.38629 1.38629 0.08186 4.23307 2.74743 1.46634 0.26236 1.09861 0.40547 10 1.68366 1.05788 1.23413 1.73710 10 c - - : 1.38629 1.38629 1.38629 1.38629 0.27412 1.49391 4.18222 0.13085 2.09843 0.37343 1.16593 11 0.10997 3.55913 3.25305 3.29634 12 A - - : 1.38629 1.38629 1.38629 1.38629 0.32497 1.33581 4.23307 1.00633 0.45501 1.09861 0.40547 12 3.25907 4.20179 0.07965 3.76511 17 G - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 13 0.08472 3.80669 3.47970 3.56864 18 A - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 14 3.14843 0.17346 3.72816 2.38282 19 C - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 15 3.52302 0.10422 4.07725 2.94675 20 C - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 16 0.08472 3.80669 3.47970 3.56864 21 A - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 17 1.48239 3.01364 0.42755 2.63544 22 G - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 18 2.96164 3.79952 0.10297 3.74089 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 19 3.80297 0.13153 3.64241 2.59356 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 20 3.46358 0.21678 3.27848 2.07238 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 21 2.95967 3.79668 0.10326 3.73704 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 22 1.28206 1.26997 2.00735 1.17977 27 u - - < 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 23 2.26007 1.02710 1.04112 1.68981 28 c - - < 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 24 2.13158 1.68627 0.89987 1.23954 29 g - - < 1.38629 1.38629 1.38629 1.38629 0.19649 4.23307 1.80858 1.46634 0.26236 1.09861 0.40547 25 1.99803 1.25308 0.88432 1.79710 30 g - - < 1.38629 1.38629 1.38629 1.38629 0.03471 4.07128 4.07128 1.46634 0.26236 0.16301 1.89435 26 1.54696 1.06606 1.64484 1.38750 31 c - - < 1.38629 1.38629 1.38629 1.38629 0.13733 2.17325 4.23307 0.23796 1.55229 1.09861 0.40547 27 0.51131 1.88475 2.43827 1.82564 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 28 2.99963 0.21276 3.59236 2.16881 34 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 29 2.38782 0.25344 3.33383 2.33936 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.41224 1.12910 4.23307 1.06726 0.42152 1.09861 0.40547 30 0.23130 2.54316 2.85419 2.65531 41 A - - _ 1.38629 1.38629 1.38629 1.38629 0.17070 4.23307 1.94897 1.46634 0.26236 1.09861 0.40547 31 1.69883 1.86300 0.90047 1.36446 43 g - - > 1.38629 1.38629 1.38629 1.38629 0.05963 4.09621 3.18809 1.46634 0.26236 2.46952 0.08842 32 2.02760 1.52757 1.15159 1.09317 44 u - - > 1.38629 1.38629 1.38629 1.38629 0.03471 4.07128 4.07128 1.46634 0.26236 0.16301 1.89435 33 1.36574 0.97328 1.53760 1.88342 45 c - - > 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 34 2.00482 1.11193 0.90843 2.01565 46 g - - > 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 35 1.89372 2.17239 0.83617 1.19660 47 g - - > 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 36 3.90966 0.12420 3.64784 2.64925 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 37 2.52254 3.43767 0.16495 3.22726 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 38 2.88038 3.81475 0.11210 3.57945 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 39 3.93979 0.12266 3.66252 2.65472 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 40 0.08472 3.80669 3.47970 3.56864 52 A - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 41 2.30363 0.66311 2.90685 1.10803 53 C - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 42 3.52302 0.10422 4.07725 2.94675 54 C - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 43 0.08472 3.80669 3.47970 3.56864 55 A - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 44 3.52302 0.10422 4.07725 2.94675 56 C - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 45 3.15434 3.02943 3.68842 0.12332 57 U - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 46 3.15434 3.02943 3.68842 0.12332 58 U - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 47 3.52302 0.10422 4.07725 2.94675 59 C - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 48 3.25907 4.20179 0.07965 3.76511 60 G - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 49 0.08472 3.80669 3.47970 3.56864 61 A - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 50 0.92226 1.02307 2.46240 1.84732 62 a - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 51 3.25907 4.20179 0.07965 3.76511 63 G - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 52 0.15945 3.23176 3.10362 2.76435 64 A - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 53 0.08472 3.80669 3.47970 3.56864 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 54 3.25907 4.20179 0.07965 3.76511 66 G - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 55 0.08472 3.80669 3.47970 3.56864 67 A - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 56 0.08472 3.80669 3.47970 3.56864 68 A - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 57 3.25907 4.20179 0.07965 3.76511 69 G - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 58 3.25907 4.20179 0.07965 3.76511 70 G - - : 1.38629 1.38629 1.38629 1.38629 0.02944 4.23307 4.23307 1.46634 0.26236 1.09861 0.40547 59 0.08472 3.80669 3.47970 3.56864 71 A - - : 1.38629 1.38629 1.38629 1.38629 0.01483 4.21846 * 1.46634 0.26236 0.00000 * //