INFERNAL1/a [1.1.4 | Dec 2020] NAME RT-13 ACC RF03017 DESC RT-13 RNA STATES 210 NODES 53 CLEN 67 W 88 ALPH RNA RF no CONS yes MAP yes DATE Mon Oct 1 20:33:49 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 13 EFFN 2.243896 CKSUM 2896365265 NULL 0.000 0.000 0.000 0.000 GA 69.10 TC 69.10 NC 50.60 EFP7GF -10.6359 0.71905 ECMLC 0.60077 -7.21637 2.78635 1600000 488672 0.002456 ECMGC 0.42231 -15.57366 -2.84785 1600000 86315 0.004634 ECMLI 0.58818 -5.81502 3.94993 1600000 374600 0.003203 ECMGI 0.46651 -10.61582 0.45108 1600000 69860 0.005726 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 88 112 -7.071 -7.278 -0.049 -5.692 IL 1 1 2 1 4 1 22 91 115 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 22 90 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 22 88 112 -8.079 -0.019 -6.733 -1.825 -3.082 1.774 -2.469 D 4 2 3 5 3 0 17 86 110 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 21 89 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 22 87 111 -8.079 -0.019 -6.733 -1.180 1.273 -2.013 -0.162 D 7 5 3 8 3 0 16 85 109 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 21 88 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 21 86 110 -8.079 -0.019 -6.733 -1.825 -3.082 1.774 -2.469 D 10 8 3 11 3 0 16 84 108 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 20 87 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 20 85 109 -8.079 -0.019 -6.733 -1.701 -1.660 -2.445 1.675 D 13 11 3 14 3 0 15 83 107 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 19 86 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 19 84 108 -8.079 -0.019 -6.733 -1.825 -3.082 1.774 -2.469 D 16 14 3 17 3 0 14 82 106 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 18 85 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 18 17 3 20 3 1 19 83 106 -8.462 -0.017 -6.780 -2.023 1.692 -2.853 -1.380 D 19 17 3 20 3 0 14 82 105 -5.620 -0.734 -1.403 IL 20 20 3 20 3 1 17 83 107 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 75 - C - - MR 21 20 3 23 3 1 18 82 105 -8.462 -0.017 -6.780 -2.023 1.692 -2.853 -1.380 D 22 20 3 23 3 0 12 80 104 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 17 82 106 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 74 - G - - MR 24 23 3 26 3 1 17 81 104 -8.462 -0.017 -6.780 -1.825 -3.082 1.774 -2.469 D 25 23 3 26 3 0 11 79 103 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 16 81 105 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 73 - U - - MR 27 26 3 29 3 1 17 80 103 -8.462 -0.017 -6.780 -1.701 -1.660 -2.445 1.675 D 28 26 3 29 3 0 10 78 102 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 15 80 104 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 72 - c - - MR 30 29 3 32 3 1 16 79 102 -8.462 -0.017 -6.780 -0.663 0.903 -1.132 0.060 D 31 29 3 32 3 0 10 77 101 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 15 79 103 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 71 - U - - MR 33 32 3 35 5 1 16 78 101 -7.194 -0.036 -7.010 -7.222 -8.113 -1.701 -1.660 -2.445 1.675 D 34 32 3 35 5 0 9 76 100 -5.352 -0.707 -2.978 -4.409 -2.404 IR 35 35 3 35 5 1 13 78 102 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 7 70 G C - - MP 36 35 3 40 6 2 17 77 100 -9.156 -9.095 -0.020 -7.872 -8.151 -8.546 -4.970 -3.204 -5.094 0.046 -5.554 -4.782 -0.862 -5.351 -4.474 3.688 -4.795 -0.912 -1.241 -4.617 -2.912 -3.967 ML 37 35 3 40 6 1 11 75 99 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 3 40 6 1 11 75 99 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 3 40 6 0 7 72 96 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 12 76 100 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 13 76 100 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 8 69 U A - - MP 42 41 6 46 6 2 17 75 98 -9.156 -9.095 -0.020 -7.872 -8.151 -8.546 -4.465 -4.297 -4.273 -0.573 -3.158 -4.811 1.176 -3.872 -4.275 -0.356 -4.634 -2.187 3.445 -4.605 -0.827 -3.070 ML 43 41 6 46 6 1 11 73 97 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 10 73 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 6 70 94 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 12 74 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 12 74 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 9 68 u a - - MP 48 47 6 52 6 2 16 73 96 -9.156 -9.095 -0.020 -7.872 -8.151 -8.546 -3.563 -3.523 -3.496 0.189 -2.528 -4.122 2.292 -3.209 -3.502 0.406 -3.925 -1.532 2.559 -3.733 0.464 -2.394 ML 49 47 6 52 6 1 10 71 95 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 10 71 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 6 68 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 11 72 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 12 72 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 10 67 C G - - MP 54 53 6 58 6 2 16 71 94 -9.156 -9.095 -0.020 -7.872 -8.151 -8.546 -3.946 -3.883 -3.764 -0.095 -2.600 -4.283 3.074 -3.344 -3.776 0.137 -4.135 -1.842 1.831 -4.055 -0.265 -2.625 ML 55 53 6 58 6 1 10 69 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 10 69 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 6 67 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 11 70 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 11 70 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 66 G C - - MP 60 59 6 64 6 2 16 69 92 -9.156 -9.095 -0.020 -7.872 -8.151 -8.546 -4.970 -3.204 -5.094 0.046 -5.554 -4.782 -0.862 -5.351 -4.474 3.688 -4.795 -0.912 -1.241 -4.617 -2.912 -3.967 ML 61 59 6 64 6 1 10 67 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 9 67 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 5 65 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 11 68 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 11 68 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 65 G C - - MP 66 65 6 70 6 2 15 67 90 -9.156 -9.095 -0.020 -7.872 -8.151 -8.546 -4.061 -2.733 -4.070 1.053 -4.765 -4.540 -0.152 -4.461 -3.991 3.351 -4.371 0.216 -0.435 -3.980 -2.144 -2.975 ML 67 65 6 70 6 1 9 65 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 9 65 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 5 63 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 10 66 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 11 66 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 64 G C - - MP 72 71 6 76 6 2 14 65 88 -9.156 -9.095 -0.020 -7.872 -8.151 -8.546 -4.013 -2.706 -4.020 1.001 -4.724 -4.528 -0.125 -4.413 -3.959 3.310 -4.343 0.545 -0.405 -3.950 -2.110 -2.927 ML 73 71 6 76 6 1 9 63 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 9 63 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 5 61 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 10 64 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 10 64 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 14 63 G C - - MP 78 77 6 82 6 2 13 63 86 -9.156 -9.095 -0.020 -7.872 -8.151 -8.546 -3.802 -2.601 -3.798 1.497 -4.447 -4.445 0.101 -4.186 -3.817 3.163 -4.218 0.246 -0.180 -3.791 -1.872 -2.712 ML 79 77 6 82 6 1 8 61 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 8 61 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 5 59 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 10 62 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 10 62 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 62 G C - - MP 84 83 6 88 6 2 11 61 84 -9.156 -9.095 -0.020 -7.872 -8.151 -8.546 -4.126 -2.768 -4.141 0.957 -4.842 -4.563 -0.216 -4.530 -4.031 3.387 -4.407 0.191 -0.500 -4.029 -2.212 -3.043 ML 85 83 6 88 6 1 8 59 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 7 59 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 4 57 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 9 60 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 9 60 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 61 g c - - MP 90 89 6 94 6 2 9 59 82 -9.156 -9.095 -0.075 -7.872 -8.151 -4.658 -3.080 -2.429 -3.122 1.987 -3.198 -3.928 1.388 -3.385 -3.228 2.293 -3.692 0.128 0.735 -3.202 -0.875 -2.110 ML 91 89 6 94 6 1 7 58 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 6 58 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 4 56 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 8 59 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 8 58 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 17 60 c g - - MP 96 95 6 100 4 2 7 57 81 -6.932 -7.139 -0.054 -5.553 -3.655 -3.596 -3.537 0.143 -2.482 -4.110 2.930 -3.193 -3.548 0.388 -3.940 -1.585 1.754 -3.795 0.327 -2.420 ML 97 95 6 100 4 1 6 57 80 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 5 56 80 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 4 55 79 -5.250 -4.932 -0.982 -1.202 IL 100 100 5 100 4 1 7 58 82 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 6 57 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - g - - - ML 102 101 6 104 3 1 6 55 78 -8.079 -0.019 -6.733 -0.076 -1.042 0.980 -0.752 D 103 101 6 104 3 0 3 53 77 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 6 56 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - u - - - ML 105 104 3 107 3 1 5 54 77 -8.462 -0.017 -6.780 -0.499 0.093 -0.930 0.766 D 106 104 3 107 3 0 3 52 76 -5.620 -0.734 -1.403 IL 107 107 3 107 3 1 5 54 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 59 - A - - MR 108 107 3 110 3 1 4 53 76 -8.462 -0.017 -6.780 1.376 -1.700 -0.603 -1.190 D 109 107 3 110 3 0 2 51 75 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 4 53 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 58 - u - - MR 111 110 3 113 2 1 3 52 75 -8.494 -0.004 -0.806 0.579 -1.600 0.682 D 112 110 3 113 2 0 2 51 75 -4.432 -0.068 IR 113 113 3 113 2 1 3 53 76 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 27 ] - - - - - - B 114 113 3 115 159 0 2 51 74 [ BEGL 28 ] - - - - - - S 115 114 1 116 4 0 0 34 58 -0.043 -6.897 -6.304 -6.945 [ MATP 29 ] 20 40 c g - - MP 116 115 1 120 6 2 2 34 58 -9.156 -9.095 -0.020 -7.872 -8.151 -8.546 -3.820 -3.755 -3.679 0.019 -2.578 -4.239 2.844 -3.300 -3.687 0.251 -4.069 -1.716 2.186 -3.951 -0.243 -2.545 ML 117 115 1 120 6 1 1 33 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 1 120 6 1 1 33 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 1 120 6 0 0 30 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 1 34 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 34 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 21 39 C G - - MP 122 121 6 126 6 2 2 32 56 -9.156 -9.095 -0.020 -7.872 -8.151 -8.546 -4.227 -4.173 -3.970 -0.377 -2.717 -4.423 3.341 -3.499 -3.998 -0.149 -4.310 -2.139 1.286 -4.302 -0.392 -2.835 ML 123 121 6 126 6 1 1 31 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 1 31 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 28 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 32 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 32 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 22 38 G C - - MP 128 127 6 132 6 2 2 30 54 -9.156 -9.095 -0.020 -7.872 -8.151 -8.546 -4.007 -2.728 -4.018 1.457 -4.617 -4.553 -0.039 -4.365 -3.942 3.286 -4.337 -0.360 -0.345 -3.975 -2.032 -2.914 ML 129 127 6 132 6 1 1 29 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 6 1 1 29 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 6 132 6 0 0 26 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 30 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 30 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 23 37 G C - - MP 134 133 6 138 6 2 2 28 52 -9.156 -9.095 -0.134 -7.872 -8.151 -3.693 -4.036 -2.742 -4.048 1.412 -4.651 -4.561 -0.066 -4.396 -3.962 3.307 -4.354 -0.376 -0.373 -3.995 -2.060 -2.944 ML 135 133 6 138 6 1 1 27 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 26 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 25 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 28 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 28 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 24 36 c g - - MP 140 139 6 144 4 2 2 26 50 -2.022 -4.189 -0.567 -5.396 -3.600 -3.547 -3.458 0.138 -2.391 -3.998 2.955 -3.112 -3.483 0.397 -3.854 -1.579 1.232 -3.728 1.064 -2.365 ML 141 139 6 144 4 1 1 24 48 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 4 1 1 24 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 143 139 6 144 4 0 0 25 48 -5.720 -0.802 -3.417 -1.671 IL 144 144 5 144 4 1 1 26 50 -2.627 -0.786 -2.058 -5.796 0.000 0.000 0.000 0.000 IR 145 145 6 145 3 1 1 25 49 -1.126 -0.936 -5.714 0.000 0.000 0.000 0.000 [ MATL 34 ] 26 - u - - - ML 146 145 6 148 3 1 1 16 35 -8.079 -0.019 -6.733 -0.350 -0.109 -0.367 0.597 D 147 145 6 148 3 0 0 16 34 -6.174 -1.687 -0.566 IL 148 148 3 148 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 27 - u - - - ML 149 148 3 151 3 1 1 15 33 -8.079 -0.019 -6.733 0.013 -0.354 -1.166 0.818 D 150 148 3 151 3 0 0 15 33 -6.174 -1.687 -0.566 IL 151 151 3 151 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 28 - a - - - ML 152 151 3 154 3 1 1 13 31 -8.079 -0.019 -6.733 0.495 -0.246 -0.711 0.184 D 153 151 3 154 3 0 0 13 32 -6.174 -1.687 -0.566 IL 154 154 3 154 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 29 - a - - - ML 155 154 3 157 2 1 1 1 1 * 0.000 0.762 -1.177 0.160 -0.426 D 156 154 3 157 2 0 0 0 0 * 0.000 IL 157 157 3 157 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 38 ] - - - - - - E 158 157 3 -1 0 0 0 0 0 [ BEGR 39 ] - - - - - - S 159 114 1 160 3 0 0 30 49 -8.079 -0.019 -6.733 IL 160 160 2 160 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - G - - - ML 161 160 2 163 5 1 1 30 49 -7.194 -0.036 -7.010 -7.222 -8.113 0.172 -1.707 1.075 -1.119 D 162 160 2 163 5 0 0 29 48 -4.959 -0.803 -4.221 -2.596 -2.508 IL 163 163 3 163 5 1 1 31 49 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 42 57 G C - - MP 164 163 3 168 6 2 2 29 48 -9.156 -9.095 -0.020 -7.872 -8.151 -8.546 -4.499 -2.976 -4.554 0.738 -5.158 -4.689 -0.496 -4.882 -4.239 3.547 -4.594 -0.641 -0.820 -4.315 -2.519 -3.437 ML 165 163 3 168 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 3 168 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 3 168 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 43 56 c g - - MP 170 169 6 174 6 2 2 27 46 -9.156 -9.095 -0.020 -7.872 -8.151 -8.546 -3.683 -3.630 -3.586 0.126 -2.551 -4.186 2.821 -3.251 -3.589 0.346 -3.996 -1.607 2.013 -3.836 0.308 -2.461 ML 171 169 6 174 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 173 169 6 174 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 174 174 5 174 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 175 175 6 175 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 44 55 c g - - MP 176 175 6 180 6 2 2 25 44 -9.156 -9.095 -0.020 -7.872 -8.151 -8.546 -3.453 -3.428 -3.414 0.250 -2.502 -4.065 2.329 -3.165 -3.420 0.448 -3.858 -1.465 2.283 -3.640 1.087 -2.328 ML 177 175 6 180 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 178 175 6 180 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 179 175 6 180 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 180 180 5 180 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 181 181 6 181 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 45 54 c g - - MP 182 181 6 186 4 2 2 23 42 -7.071 -7.278 -0.049 -5.692 -3.614 -3.571 -3.537 0.163 -2.536 -4.152 2.785 -3.226 -3.538 0.372 -3.956 -1.565 1.881 -3.779 0.745 -2.422 ML 183 181 6 186 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 184 181 6 186 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 185 181 6 186 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 186 186 5 186 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 187 187 6 187 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - a - - - ML 188 187 6 190 3 1 1 20 39 -8.079 -0.019 -6.733 0.861 -0.407 -0.550 -0.422 D 189 187 6 190 3 0 0 20 38 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 47 - G - - - ML 191 190 3 193 3 1 1 19 38 -8.079 -0.019 -6.733 -1.825 -3.082 1.774 -2.469 D 192 190 3 193 3 0 0 18 37 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 48 - G - - - ML 194 193 3 196 3 1 1 18 36 -8.079 -0.019 -6.733 -1.825 -3.082 1.774 -2.469 D 195 193 3 196 3 0 0 17 36 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 49 - G - - - ML 197 196 3 199 3 1 1 17 35 -8.079 -0.019 -6.733 -1.825 -3.082 1.774 -2.469 D 198 196 3 199 3 0 0 16 35 -6.174 -1.687 -0.566 IL 199 199 3 199 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 50 - U - - - ML 200 199 3 202 3 1 1 16 33 -8.079 -0.019 -6.733 -1.701 -1.660 -2.445 1.675 D 201 199 3 202 3 0 0 15 33 -6.174 -1.687 -0.566 IL 202 202 3 202 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 51 - C - - - ML 203 202 3 205 3 1 1 14 31 -4.183 -0.096 -6.733 -1.394 1.429 -2.230 -0.486 D 204 202 3 205 3 0 0 12 28 -6.174 -1.687 -0.566 IL 205 205 3 205 3 1 1 16 32 -1.617 -0.681 -4.317 0.000 0.000 0.000 0.000 [ MATL 51 ] 53 - A - - - ML 206 205 3 208 2 1 1 1 1 * 0.000 1.235 -0.984 -0.847 -0.776 D 207 205 3 208 2 0 0 0 0 * 0.000 IL 208 208 3 208 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 52 ] - - - - - - E 209 208 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME RT-13 ACC RF03017 DESC RT-13 RNA LENG 67 MAXL 146 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Oct 1 20:33:50 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 13 EFFN 4.243408 CKSUM 2896365265 STATS LOCAL MSV -7.7695 0.71905 STATS LOCAL VITERBI -9.1168 0.71905 STATS LOCAL FORWARD -3.2898 0.71905 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.83662 1.27467 1.06130 1.53659 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 0.00000 * 1 3.41339 4.37093 0.06754 3.92523 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 2 2.74259 0.33826 3.36662 1.67090 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 3 3.41339 4.37093 0.06754 3.92523 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 4 3.31639 3.16709 3.85390 0.10492 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 5 3.41339 4.37093 0.06754 3.92523 5 G - - : 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 6 3.71098 0.08705 4.24806 3.10952 6 C - - : 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 7 3.07727 3.95883 0.08917 3.90500 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 8 3.91171 2.65068 3.75276 0.12111 8 U - - ( 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 9 2.80059 1.15746 2.57576 0.59994 9 U - - ( 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 10 3.08139 0.47380 2.86249 1.29337 10 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 11 3.07217 3.95115 0.08982 3.89461 11 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 12 2.01606 3.14423 0.25662 2.99457 12 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 13 2.08393 3.13260 0.24699 2.97972 13 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 14 1.60872 2.92222 0.38099 2.76682 14 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 15 2.11191 3.20754 0.23367 3.05950 15 G - - ( 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 16 1.15464 1.81487 0.91962 2.09312 16 g - - ( 1.38629 1.38629 1.38629 1.38629 0.14795 4.31116 2.08660 1.46634 0.26236 1.09861 0.40547 17 2.77900 0.58116 2.54964 1.20217 17 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03064 4.19385 4.19385 1.46634 0.26236 0.19576 1.72717 18 1.58464 2.25644 0.53335 2.26705 18 G - - , 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 19 1.96512 1.24425 2.14000 0.78955 19 u - - , 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 20 2.98498 0.65624 2.75420 1.00239 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 21 3.32049 0.29866 3.11961 1.72665 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 22 1.64789 3.13367 0.33715 2.99202 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 23 1.68777 3.15611 0.32373 3.01521 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.28835 4.31116 1.43934 1.46634 0.26236 1.09861 0.40547 24 2.85393 0.53573 2.63814 1.25301 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.40668 1.14930 4.05799 0.10574 2.29921 0.10723 2.28590 25 1.80295 1.41845 1.61228 0.93226 26 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 26 1.40722 1.66604 2.39625 0.74418 27 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 27 0.99997 1.54201 1.95189 1.28680 28 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 28 0.78633 2.45409 1.19954 1.85017 29 a - - _ 1.38629 1.38629 1.38629 1.38629 0.75307 0.66230 4.31116 0.47888 0.96621 1.09861 0.40547 29 2.04837 2.79974 0.30517 2.61416 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 30 3.24361 0.36730 2.96993 1.52754 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 31 3.21949 0.38244 2.94533 1.49056 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 32 1.90953 3.27240 0.26501 3.06318 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 33 1.10046 2.91322 0.60210 2.72846 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 34 1.30235 3.02073 0.49669 2.64793 41 G - - , 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 35 2.33068 3.58349 0.16973 3.47047 42 G - - < 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 36 2.82223 0.67592 2.58727 1.03110 43 C - - < 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 37 2.73885 1.11129 2.51832 0.64316 44 U - - < 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 38 2.78857 0.70157 2.55969 1.00688 45 c - - < 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 39 0.68977 1.65755 1.83429 1.91070 46 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 40 3.41339 4.37093 0.06754 3.92523 47 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 41 3.41339 4.37093 0.06754 3.92523 48 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 42 3.41339 4.37093 0.06754 3.92523 49 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 43 3.31639 3.16709 3.85390 0.10492 50 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 44 2.98646 0.23761 3.59371 2.01346 51 C - - _ 1.38629 1.38629 1.38629 1.38629 0.09770 2.52997 4.31116 0.30837 1.32667 1.09861 0.40547 45 0.40314 2.19705 2.13676 2.27679 53 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 46 1.37107 2.73087 0.50568 2.55224 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 47 0.99626 2.68951 0.73133 2.50645 55 g - - > 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 48 1.25288 2.75830 0.55282 2.58235 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 49 3.68198 0.19714 3.41372 2.11336 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 50 2.32581 0.84498 2.92011 0.87036 58 c - - , 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 51 0.31363 3.03668 1.85231 2.74349 59 A - - , 1.38629 1.38629 1.38629 1.38629 0.14795 4.31116 2.08660 1.46634 0.26236 1.09861 0.40547 52 1.47549 2.71762 0.46742 2.54226 60 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03064 4.19385 4.19385 1.46634 0.26236 0.19576 1.72717 53 2.33283 1.08388 1.68595 0.96909 61 u - - ) 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 54 3.28805 0.32048 3.02393 1.66991 62 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 55 3.01115 0.48389 2.73221 1.31189 63 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 56 3.21408 0.37539 2.94641 1.51296 64 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 57 3.22911 0.34724 2.95933 1.59991 65 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 58 4.05122 0.10868 3.80704 2.75883 66 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 59 1.42200 3.02878 0.42788 2.83866 67 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 60 0.76792 2.74673 0.92858 2.56692 68 a - - ) 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 61 0.13730 3.95707 2.48569 3.65340 69 A - - ) 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 62 4.09388 0.10681 3.82837 2.76651 70 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 63 3.31639 3.16709 3.85390 0.10492 71 U - - : 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 64 2.17880 0.58532 2.36148 1.44556 72 C - - : 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 65 3.31639 3.16709 3.85390 0.10492 73 U - - : 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 66 3.41339 4.37093 0.06754 3.92523 74 G - - : 1.38629 1.38629 1.38629 1.38629 0.02720 4.31116 4.31116 1.46634 0.26236 1.09861 0.40547 67 3.71098 0.08705 4.24806 3.10952 75 C - - : 1.38629 1.38629 1.38629 1.38629 0.01369 4.29765 * 1.46634 0.26236 0.00000 * //