INFERNAL1/a [1.1.5 | Sep 2023] NAME M23 ACC RF03006 DESC M23 RNA STATES 168 NODES 47 CLEN 53 W 70 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 22:20:24 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03006/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 31 EFFN 5.717896 CKSUM 1987826663 NULL 0.000 0.000 0.000 0.000 GA 41.20 TC 41.30 NC 40.60 EFP7GF -15.2830 0.71930 ECMLC 0.66624 -6.18528 3.05756 1600000 566928 0.002117 ECMGC 0.32758 -21.06365 -3.58205 1600000 122764 0.003258 ECMLI 0.59564 -5.94026 4.13587 1600000 484960 0.002474 ECMGI 0.36033 -15.46749 -0.14584 1600000 99943 0.004002 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 70 89 -8.002 -8.209 -0.025 -6.623 IL 1 1 2 1 4 1 18 75 94 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 74 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 17 70 89 -8.964 -0.010 -7.618 -3.940 1.915 -4.637 -3.021 D 4 2 3 5 3 0 13 69 88 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 16 73 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 16 69 88 -8.964 -0.010 -7.618 -3.421 -4.851 1.932 -4.163 D 7 5 3 8 3 0 12 68 87 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 16 72 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 15 68 87 -8.964 -0.010 -7.618 -3.421 -4.851 1.932 -4.163 D 10 8 3 11 3 0 11 67 86 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 15 71 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 14 67 86 -5.045 -0.052 -7.618 -2.444 1.615 -3.362 -0.608 D 13 11 3 14 3 0 11 66 84 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 14 69 87 -1.620 -0.679 -4.320 0.000 0.000 0.000 0.000 [ MATL 5 ] 6 - G - - - ML 15 14 3 17 3 1 13 66 85 -8.964 -0.143 -3.432 -0.125 -0.844 1.075 -1.252 D 16 14 3 17 3 0 10 65 84 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 13 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 7 - u - - - ML 18 17 3 20 3 1 12 65 84 -9.179 -0.011 -7.496 -0.506 -0.180 -0.507 0.773 D 19 17 3 20 3 0 10 64 83 -6.609 -0.323 -2.392 IL 20 20 3 20 3 1 12 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 62 - G - - MR 21 20 3 23 3 1 11 64 83 -9.306 -0.010 -7.624 -3.421 -4.851 1.932 -4.163 D 22 20 3 23 3 0 7 62 81 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 11 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 61 - G - - MR 24 23 3 26 3 1 10 63 82 -9.306 -0.010 -7.624 -3.421 -4.851 1.932 -4.163 D 25 23 3 26 3 0 7 61 80 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 10 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 60 - A - - MR 27 26 3 29 3 1 9 62 81 -9.306 -0.010 -7.624 1.813 -3.294 -1.933 -3.024 D 28 26 3 29 3 0 6 60 79 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 9 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 59 - A - - MR 30 29 3 32 3 1 8 61 80 -9.306 -0.010 -7.624 1.931 -4.284 -3.762 -3.996 D 31 29 3 32 3 0 5 59 78 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 8 62 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 58 - A - - MR 33 32 3 35 3 1 7 60 79 -9.306 -0.010 -7.624 1.841 -3.436 -2.221 -3.177 D 34 32 3 35 3 0 5 58 77 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 7 61 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 57 - G - - MR 36 35 3 38 3 1 6 59 78 -9.306 -0.128 -3.580 -3.421 -4.851 1.932 -4.163 D 37 35 3 38 3 0 4 57 76 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 7 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 56 - G - - MR 39 38 3 41 3 1 6 58 77 -1.881 -0.943 -2.263 -1.266 -1.494 1.467 -1.103 D 40 38 3 41 3 0 4 56 75 -7.570 -2.747 -0.242 IR 41 41 3 41 3 1 6 58 77 -2.772 -0.264 -5.598 0.000 0.000 0.000 0.000 [ MATR 14 ] - 53 - a - - MR 42 41 3 44 2 1 5 56 75 -8.980 -0.003 0.585 0.185 -1.303 -0.061 D 43 41 3 44 2 0 4 55 74 -6.883 -0.012 IR 44 44 3 44 2 1 5 58 76 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 15 ] - - - - - - B 45 44 3 46 114 0 4 55 74 [ BEGL 16 ] - - - - - - S 46 45 1 47 4 0 0 36 55 -0.029 -7.460 -6.867 -7.507 [ MATP 17 ] 8 32 G C - - MP 47 46 1 51 6 2 2 37 55 -9.604 -9.543 -0.015 -8.320 -8.599 -8.994 -5.292 -3.494 -5.332 -0.200 -6.312 -5.082 -1.398 -5.857 -4.928 3.683 -1.917 -0.123 -1.672 -4.812 -3.446 -4.262 ML 48 46 1 51 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 49 46 1 51 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 1 51 6 0 0 33 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 9 31 C G - - MP 53 52 6 57 6 2 2 35 53 -9.604 -9.543 -0.015 -8.320 -8.599 -8.994 -6.729 -6.820 -6.005 -3.008 -4.414 -6.131 3.897 -5.478 -6.235 -2.949 -6.146 -4.917 -1.239 -6.655 -2.287 -5.038 ML 54 52 6 57 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 6 57 6 0 0 31 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 10 30 C G - - MP 59 58 6 63 6 2 2 33 51 -9.604 -9.543 -0.015 -8.320 -8.599 -8.994 -6.729 -6.820 -6.005 -3.008 -4.414 -6.131 3.897 -5.478 -6.235 -2.949 -6.146 -4.917 -1.239 -6.655 -2.287 -5.038 ML 60 58 6 63 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 11 29 G C - - MP 65 64 6 69 6 2 2 30 49 -9.604 -9.543 -0.015 -8.320 -8.599 -8.994 -6.584 -4.016 -7.160 -1.139 -7.725 -5.378 -2.637 -7.328 -5.367 3.883 -5.615 -1.831 -2.998 -5.616 -4.826 -6.013 ML 66 64 6 69 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 12 28 C G - - MP 71 70 6 75 6 2 2 28 47 -9.604 -9.543 -0.015 -8.320 -8.599 -8.994 -6.729 -6.820 -6.005 -3.008 -4.414 -6.131 3.897 -5.478 -6.235 -2.949 -6.146 -4.917 -1.239 -6.655 -2.287 -5.038 ML 72 70 6 75 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 6 75 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 13 27 c g - - MP 77 76 6 81 4 2 2 26 45 -8.002 -8.209 -0.025 -6.623 -2.876 -2.638 -1.079 1.793 -2.884 -3.788 2.015 -3.229 -3.074 1.976 -3.585 -0.709 0.774 -3.079 -0.753 -2.072 ML 78 76 6 81 4 1 1 28 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 4 1 1 27 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 80 76 6 81 4 0 0 26 45 -4.568 -4.250 -2.265 -0.520 IL 81 81 5 81 4 1 1 29 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 82 82 6 82 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 14 - g - - - ML 83 82 6 85 3 1 1 24 42 -8.964 -0.010 -7.618 -0.836 -0.275 0.814 -0.225 D 84 82 6 85 3 0 0 23 42 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 15 - G - - - ML 86 85 3 88 3 1 1 23 41 -8.964 -0.010 -7.618 -0.832 -3.217 1.668 -2.709 D 87 85 3 88 3 0 0 22 41 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 16 - C - - - ML 89 88 3 91 3 1 1 21 40 -8.964 -0.010 -7.618 -3.940 1.915 -4.637 -3.021 D 90 88 3 91 3 0 0 21 40 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 17 - C - - - ML 92 91 3 94 3 1 1 20 39 -8.964 -0.010 -7.618 -3.940 1.915 -4.637 -3.021 D 93 91 3 94 3 0 0 20 39 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 18 - G - - - ML 95 94 3 97 3 1 1 19 37 -8.964 -0.010 -7.618 -3.421 -4.851 1.932 -4.163 D 96 94 3 97 3 0 0 19 37 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 19 - G - - - ML 98 97 3 100 3 1 1 17 36 -1.616 -0.581 -7.618 -0.570 -1.897 1.210 -0.424 D 99 97 3 100 3 0 0 16 34 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 17 36 -2.401 -0.342 -5.541 0.000 0.000 0.000 0.000 [ MATL 29 ] 22 - A - - - ML 101 100 3 103 3 1 1 16 34 -8.964 -0.054 -4.846 1.171 -0.908 -1.296 -0.308 D 102 100 3 103 3 0 0 16 34 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 23 - A - - - ML 104 103 3 106 3 1 1 14 32 -1.973 -0.434 -7.574 1.782 -2.097 -2.709 -2.513 D 105 103 3 106 3 0 0 13 31 -6.805 -0.850 -1.197 IL 106 106 3 106 3 1 1 14 32 -2.538 -0.320 -5.238 0.000 0.000 0.000 0.000 [ MATL 31 ] 25 - c - - - ML 107 106 3 109 3 1 1 12 31 -8.964 -0.010 -7.618 0.025 0.197 -0.409 0.115 D 108 106 3 109 3 0 0 13 32 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 26 - a - - - ML 110 109 3 112 2 1 1 1 1 * 0.000 0.511 -0.567 0.453 -0.914 D 111 109 3 112 2 0 0 0 0 * 0.000 IL 112 112 3 112 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 33 ] - - - - - - E 113 112 3 -1 0 0 0 0 0 [ BEGR 34 ] - - - - - - S 114 45 1 115 5 0 0 30 49 -1.574 -0.613 -7.813 -8.025 -8.917 IL 115 115 2 115 5 1 1 31 50 -3.864 -0.162 -5.543 -7.375 -6.649 0.000 0.000 0.000 0.000 [ MATP 35 ] 34 52 g c - - MP 116 115 2 120 6 2 2 30 48 -9.604 -9.543 -0.015 -8.320 -8.599 -8.994 -3.129 -2.594 -3.183 1.249 -3.350 -3.944 0.682 -3.550 -0.792 2.642 -3.806 -0.190 1.508 -3.223 -1.141 -2.261 ML 117 115 2 120 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 2 120 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 2 120 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 35 51 g c - - MP 122 121 6 126 6 2 2 28 46 -9.604 -9.543 -0.015 -8.320 -8.599 -8.994 -3.006 -2.749 -3.101 0.710 -2.904 -3.897 1.952 -3.288 -1.712 2.360 -3.688 -0.409 0.863 -3.193 0.464 -2.148 ML 123 121 6 126 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 36 50 C G - - MP 128 127 6 132 6 2 2 26 44 -9.604 -9.543 -0.015 -8.320 -8.599 -8.994 -5.353 -5.388 -4.921 -1.476 -3.438 -5.242 3.540 -4.285 -4.957 -1.337 -5.196 -3.368 1.399 -5.331 -1.098 -3.751 ML 129 127 6 132 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 6 132 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 37 49 G C - - MP 134 133 6 138 6 2 2 24 42 -9.604 -9.543 -0.015 -8.320 -8.599 -8.994 -6.584 -4.016 -7.160 -1.139 -7.725 -5.378 -2.637 -7.328 -5.367 3.883 -5.615 -1.831 -2.998 -5.616 -4.826 -6.013 ML 135 133 6 138 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 38 48 G C - - MP 140 139 6 144 6 2 2 22 40 -9.604 -9.543 -0.015 -8.320 -8.599 -8.994 -6.584 -4.016 -7.160 -1.139 -7.725 -5.378 -2.637 -7.328 -5.367 3.883 -5.615 -1.831 -2.998 -5.616 -4.826 -6.013 ML 141 139 6 144 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 39 47 g c - - MP 146 145 6 150 4 2 2 20 38 -2.406 -8.209 -0.326 -6.623 -3.308 -2.779 -3.344 1.182 -3.276 -4.098 2.018 -3.584 -3.483 2.479 -3.941 -0.654 0.820 -1.993 -0.961 -2.351 ML 147 145 6 150 4 1 1 18 37 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 4 1 1 18 37 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 149 145 6 150 4 0 0 17 36 -4.568 -4.250 -2.265 -0.520 IL 150 150 5 150 4 1 1 19 38 -3.107 -0.517 -2.539 -6.276 0.000 0.000 0.000 0.000 IR 151 151 6 151 3 1 1 18 37 -2.311 -0.382 -5.012 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - c - - - ML 152 151 6 154 3 1 1 17 35 -8.964 -0.010 -7.618 -0.226 0.534 -0.703 0.115 D 153 151 6 154 3 0 0 17 35 -6.174 -1.687 -0.566 IL 154 154 3 154 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - c - - - ML 155 154 3 157 3 1 1 15 34 -8.964 -0.010 -7.618 0.039 0.398 -0.435 -0.128 D 156 154 3 157 3 0 0 16 34 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - u - - - ML 158 157 3 160 3 1 1 14 32 -8.964 -0.010 -7.618 -0.454 0.149 -0.519 0.549 D 159 157 3 160 3 0 0 14 33 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - g - - - ML 161 160 3 163 3 1 1 12 31 -8.964 -0.413 -2.019 -0.264 -0.549 0.489 0.111 D 162 160 3 163 3 0 0 13 32 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - u - - - ML 164 163 3 166 2 1 1 1 1 * 0.000 -0.302 -0.583 0.206 0.452 D 165 163 3 166 2 0 0 0 0 * 0.000 IL 166 166 3 166 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 167 166 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME M23 ACC RF03006 DESC M23 RNA LENG 53 MAXL 120 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 22:20:24 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03006/CM NSEQ 31 EFFN 9.963745 CKSUM 1987826663 STATS LOCAL MSV -7.5695 0.71930 STATS LOCAL VITERBI -8.9057 0.71930 STATS LOCAL FORWARD -3.3580 0.71930 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.76663 1.16047 0.90427 2.19900 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 0.00000 * 1 4.75006 0.03139 5.12932 4.11464 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 2 4.34689 5.41219 0.02552 4.85483 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 3 4.34689 5.41219 0.02552 4.85483 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 4 3.65940 0.20741 4.29605 1.91094 4 C - - : 1.38629 1.38629 1.38629 1.38629 0.04719 3.24986 4.91778 0.34222 1.23853 1.09861 0.40547 5 1.54933 1.98908 0.53739 2.71033 6 G - - : 1.38629 1.38629 1.38629 1.38629 0.11881 4.91778 2.25656 1.46634 0.26236 1.09861 0.40547 6 1.90738 1.49515 1.72216 0.80154 7 u - - : 1.38629 1.38629 1.38629 1.38629 0.01634 4.81531 4.81531 1.46634 0.26236 0.13079 2.09886 7 3.37450 4.32875 0.06399 4.22922 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 8 5.18545 0.03192 5.15111 3.91066 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 9 5.16168 0.03226 5.13560 3.90545 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 10 3.80901 4.86543 0.03841 4.85341 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 11 5.13664 0.03263 5.11912 3.89984 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 12 1.21675 1.24166 1.22448 2.11200 13 a - - < 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 13 2.31844 1.54295 0.70196 1.64917 14 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 14 2.03796 4.12115 0.18549 3.78175 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 15 4.75006 0.03139 5.12932 4.11464 16 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 16 4.75006 0.03139 5.12932 4.11464 17 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 17 4.34689 5.41219 0.02552 4.85483 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 18 1.94072 3.10541 0.45430 1.73328 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.47074 0.99929 4.91778 0.11886 2.18865 1.09861 0.40547 19 0.49431 2.11260 2.48075 1.68523 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04882 4.91778 3.21064 1.46634 0.26236 1.09861 0.40547 20 0.10540 2.97209 3.78050 3.64850 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.35273 1.23902 4.88420 0.05144 2.99297 0.30952 1.32351 21 1.40912 1.18181 1.66144 1.35072 25 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 22 1.00265 1.77962 0.98218 2.40908 26 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 23 2.34485 1.30778 1.07087 1.23440 27 g - - > 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 24 4.14628 5.25627 0.02825 4.98842 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 25 4.90281 0.04808 4.75585 3.47641 29 C - - > 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 26 4.14718 5.25793 0.02821 4.99020 30 G - - > 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 27 4.14472 5.25339 0.02831 4.98535 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 28 4.35518 0.14657 3.33431 2.43205 32 C - - > 1.38629 1.38629 1.38629 1.38629 0.52908 0.90748 4.91778 0.03587 3.34574 1.09861 0.40547 29 1.82504 2.59814 0.60932 1.51116 34 G - - < 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 30 2.31268 1.32441 0.83033 1.61374 35 g - - < 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 31 4.15697 0.23619 4.02458 1.73251 36 C - - < 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 32 3.80114 4.85164 0.03886 4.83425 37 G - - < 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 33 3.80244 4.85391 0.03878 4.83741 38 G - - < 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 34 1.87885 1.25168 0.86814 1.95560 39 g - - < 1.38629 1.38629 1.38629 1.38629 0.23937 1.58201 4.91778 0.06971 2.69800 1.09861 0.40547 35 1.62976 0.92436 1.89990 1.35615 41 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 36 1.39730 1.01962 1.68376 1.57828 42 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 37 1.85606 1.22480 1.73686 0.98398 43 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 38 1.68325 1.79109 0.95894 1.33123 44 g - - _ 1.38629 1.38629 1.38629 1.38629 0.20715 4.91778 1.71598 1.46634 0.26236 1.09861 0.40547 39 1.72657 1.84346 1.15706 1.05146 45 u - - _ 1.38629 1.38629 1.38629 1.38629 0.15170 2.02558 4.72846 0.12902 2.11159 0.07824 2.58689 40 2.26127 0.89643 1.18427 1.70489 47 c - - > 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 41 4.90661 0.04801 4.75804 3.47709 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 42 4.91504 0.04785 4.76288 3.47859 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 43 1.82549 4.18534 0.21803 3.93509 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 44 2.11562 0.96531 1.02559 1.96616 51 c - - > 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 45 1.40702 0.78138 2.41634 1.56971 52 c - - > 1.38629 1.38629 1.38629 1.38629 0.38612 4.91778 1.16156 1.46634 0.26236 1.09861 0.40547 46 0.93163 1.17684 2.53933 1.51905 53 a - - : 1.38629 1.38629 1.38629 1.38629 0.56816 0.86063 4.55295 0.12521 2.13972 0.38660 1.13745 47 2.63738 2.52624 0.28660 2.32609 56 G - - : 1.38629 1.38629 1.38629 1.38629 0.01622 4.82301 4.82301 1.46634 0.26236 0.13950 2.03863 48 4.34689 5.41219 0.02552 4.85483 57 G - - : 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 49 0.07498 4.31935 3.12745 4.19317 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 50 0.02399 5.05360 4.66387 4.84288 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 51 0.09213 4.21434 2.87383 4.08957 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 52 4.34689 5.41219 0.02552 4.85483 61 G - - : 1.38629 1.38629 1.38629 1.38629 0.01474 4.91778 4.91778 1.46634 0.26236 1.09861 0.40547 53 4.34689 5.41219 0.02552 4.85483 62 G - - : 1.38629 1.38629 1.38629 1.38629 0.00740 4.91044 * 1.46634 0.26236 0.00000 * //