INFERNAL1/a [1.1.5 | Sep 2023] NAME GP20-b ACC RF03003 DESC GP20-b RNA STATES 195 NODES 59 CLEN 62 W 108 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 19:16:32 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03003/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 210 EFFN 73.440399 CKSUM 2824735036 NULL 0.000 0.000 0.000 0.000 GA 36.20 TC 36.40 NC 36.00 EFP7GF -18.8381 0.72235 ECMLC 0.70204 -7.79550 1.22349 1600000 674548 0.001779 ECMGC 0.34072 -23.77271 -10.21456 1600000 40576 0.009858 ECMLI 0.63713 -6.04112 3.26594 1600000 451318 0.002659 ECMGI 0.34550 -21.38452 -8.02505 1600000 40425 0.009895 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 108 164 -11.361 -11.568 -0.002 -9.983 IL 1 1 2 1 4 14 34 110 166 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 13 34 109 166 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - g - - - ML 3 2 3 5 3 15 34 108 164 -12.276 -0.001 -10.930 -1.234 -1.746 0.925 0.463 D 4 2 3 5 3 11 29 105 162 -6.174 -1.687 -0.566 IL 5 5 3 5 3 13 33 108 165 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 14 33 107 163 -12.276 -0.001 -10.930 -5.023 -2.129 1.837 -2.576 D 7 5 3 8 3 10 29 104 161 -6.174 -1.687 -0.566 IL 8 8 3 8 3 13 32 107 164 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - u - - - ML 9 8 3 11 3 13 32 106 162 -12.276 -0.001 -10.930 -0.587 0.671 -2.871 0.683 D 10 8 3 11 3 10 28 103 160 -6.174 -1.687 -0.566 IL 11 11 3 11 3 12 32 106 163 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 12 31 105 161 -12.276 -0.046 -5.007 -3.777 1.674 -6.020 -0.472 D 13 11 3 14 3 10 28 102 159 -6.174 -1.687 -0.566 IL 14 14 3 14 3 12 31 105 162 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - a - - - ML 15 14 3 17 3 12 30 104 160 -12.231 -0.215 -2.852 0.396 -0.216 -0.215 -0.056 D 16 14 3 17 3 10 27 101 157 -8.900 -4.413 -0.073 IL 17 17 3 17 3 12 30 105 161 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - g - - - ML 18 17 3 20 3 12 30 103 160 -12.017 -0.290 -2.459 0.110 -1.522 0.872 -0.430 D 19 17 3 20 3 9 27 100 157 -11.136 -6.649 -0.015 IL 20 20 3 20 3 12 30 104 160 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - c - - - ML 21 20 3 23 3 12 29 102 159 -0.726 -1.341 -10.346 -0.396 0.195 0.029 0.104 D 22 20 3 23 3 9 27 100 157 -10.802 -0.035 -5.401 IL 23 23 3 23 3 12 29 102 158 -2.538 -0.276 -9.132 0.000 0.000 0.000 0.000 [ MATR 8 ] - 82 - A - - MR 24 23 3 26 3 11 28 100 157 -12.568 -0.001 -10.885 1.995 -8.380 -7.637 -7.764 D 25 23 3 26 3 6 24 98 155 -7.126 -2.304 -0.340 IR 26 26 3 26 3 9 27 101 157 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 81 - U - - MR 27 26 3 29 3 10 27 99 156 -12.568 -0.001 -10.885 -2.670 -3.321 -5.884 1.898 D 28 26 3 29 3 6 24 98 154 -7.126 -0.732 -1.356 IR 29 29 3 29 3 8 26 100 156 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 80 - g - - MR 30 29 3 32 3 9 26 98 155 -12.574 -0.001 -10.891 -2.526 0.757 0.845 -1.556 D 31 29 3 32 3 6 23 96 153 -6.390 -1.568 -0.620 IR 32 32 3 32 3 8 25 99 155 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 79 - C - - MR 33 32 3 35 3 8 25 97 154 -12.574 -0.001 -10.891 -3.653 1.930 -6.717 -3.318 D 34 32 3 35 3 6 22 95 152 -6.390 -1.568 -0.620 IR 35 35 3 35 3 8 25 98 154 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 78 - G - - MR 36 35 3 38 3 7 24 96 153 -12.574 -0.001 -10.891 -0.270 -5.470 1.593 -2.920 D 37 35 3 38 3 5 22 95 151 -6.390 -1.568 -0.620 IR 38 38 3 38 3 7 24 97 153 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 77 - A - - MR 39 38 3 41 3 6 23 95 152 -3.291 -1.090 -1.224 1.715 -0.800 -5.545 -3.046 D 40 38 3 41 3 5 21 94 151 -6.390 -1.568 -0.620 IR 41 41 3 41 3 7 23 96 153 -2.100 -0.395 -7.342 0.000 0.000 0.000 0.000 [ MATR 14 ] - 74 - A - - MR 42 41 3 44 3 6 22 95 151 -11.769 -0.002 -10.087 1.428 0.018 -4.603 -1.972 D 43 41 3 44 3 5 21 94 150 -12.463 -0.014 -6.693 IR 44 44 3 44 3 5 22 95 151 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 73 - A - - MR 45 44 3 47 3 5 21 94 150 -12.574 -0.001 -10.891 1.953 -6.548 -4.436 -3.789 D 46 44 3 47 3 1 18 91 148 -6.390 -1.568 -0.620 IR 47 47 3 47 3 4 21 94 151 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 72 - A - - MR 48 47 3 50 3 4 20 93 149 -12.574 -0.001 -10.891 1.957 -4.115 -6.401 -4.421 D 49 47 3 50 3 1 17 91 147 -6.390 -1.568 -0.620 IR 50 50 3 50 3 4 20 93 150 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 71 - A - - MR 51 50 3 53 3 3 19 92 148 -12.574 -0.001 -10.891 1.651 -1.794 -3.186 -1.114 D 52 50 3 53 3 1 17 90 146 -6.390 -1.568 -0.620 IR 53 53 3 53 3 3 19 92 149 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 70 - A - - MR 54 53 3 56 3 2 18 91 147 -12.574 -0.001 -10.891 1.914 -5.945 -3.572 -2.941 D 55 53 3 56 3 1 16 89 146 -6.390 -1.568 -0.620 IR 56 56 3 56 3 2 18 91 148 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 69 - U - - MR 57 56 3 59 2 1 17 90 146 -2.854 -0.215 -8.695 -7.761 -9.806 1.997 D 58 56 3 59 2 0 16 88 145 -4.432 -0.068 IR 59 59 3 59 2 1 17 90 146 -2.983 -0.195 0.000 0.000 0.000 0.000 [ BIF 20 ] - - - - - - B 60 59 3 61 123 0 16 88 145 [ BEGL 21 ] - - - - - - S 61 60 1 62 4 0 0 31 49 -0.029 -10.326 -6.722 -6.666 [ MATP 22 ] 10 31 c g - - MP 62 61 1 66 6 2 2 31 49 -12.212 -12.151 -0.002 -10.928 -11.208 -11.603 -5.516 -3.495 -2.489 -1.405 -5.058 -6.458 2.543 -5.576 -2.235 2.421 -1.920 -1.747 1.486 -5.765 -1.152 -4.551 ML 63 61 1 66 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 64 61 1 66 6 1 1 29 48 -7.848 -6.577 -1.278 -6.555 -0.928 -4.769 0.469 0.055 -0.757 -0.022 D 65 61 1 66 6 0 0 28 46 -10.256 -8.955 -1.915 -5.434 -1.467 -1.527 IL 66 66 5 66 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 11 30 c g - - MP 68 67 6 72 6 2 2 29 47 -12.223 -12.163 -0.008 -10.939 -7.949 -11.614 -6.433 -6.142 -3.298 1.935 -5.411 -7.285 2.500 -6.041 -6.333 1.550 -6.847 -2.846 1.468 -6.617 -1.148 -5.080 ML 69 67 6 72 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 6 1 1 27 46 -7.932 -6.661 -0.624 -6.639 -1.773 -4.853 -0.045 -0.118 0.210 -0.070 D 71 67 6 72 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 72 72 5 72 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 73 73 6 73 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 12 29 g c - - MP 74 73 6 78 6 2 2 27 45 -12.231 -12.171 -0.016 -10.947 -11.227 -6.711 -0.841 -4.387 -4.540 0.642 -1.661 -5.367 1.513 -4.851 -2.613 2.695 -2.894 -1.876 -0.429 -4.656 1.410 -3.732 ML 75 73 6 78 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 76 73 6 78 6 1 1 25 44 -7.435 -6.164 -0.988 -6.142 -1.276 -4.355 0.996 -0.863 -0.606 -0.326 D 77 73 6 78 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 78 78 5 78 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 79 79 6 79 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 13 28 c g - - MP 80 79 6 84 6 2 2 25 43 -12.223 -12.163 -0.002 -10.939 -11.219 -11.614 0.430 -2.677 -3.051 1.219 -0.274 -4.646 2.154 -4.143 -0.901 1.061 -4.434 -2.075 1.412 -3.935 -0.218 -2.461 ML 81 79 6 84 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 82 79 6 84 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 83 79 6 84 6 0 0 21 39 -10.289 -8.987 -4.785 -5.467 -5.484 -0.127 IL 84 84 5 84 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 85 85 6 85 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 14 27 a u - - MP 86 85 6 90 4 2 2 23 41 -2.763 -4.127 -0.338 -7.788 1.086 0.926 0.626 1.260 -1.725 -0.566 0.805 -1.223 -0.338 0.107 -0.320 -1.343 -0.306 -0.937 -2.039 -2.019 ML 87 85 6 90 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 88 85 6 90 4 1 1 22 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 89 85 6 90 4 0 0 20 39 -5.753 -5.434 -0.618 -1.705 IL 90 90 5 90 4 1 1 22 40 -5.550 -1.209 -0.879 -8.719 0.000 0.000 0.000 0.000 IR 91 91 6 91 3 1 1 21 40 -4.163 -0.096 -6.864 0.000 0.000 0.000 0.000 [ MATL 27 ] 16 - G - - - ML 92 91 6 94 3 1 1 20 39 -12.271 -0.001 -10.925 -0.818 -6.140 1.750 -4.213 D 93 91 6 94 3 0 0 21 39 -6.886 -0.788 -1.278 IL 94 94 3 94 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 17 - g - - - ML 95 94 3 97 3 1 1 19 37 -12.276 -0.001 -10.930 0.595 -3.578 0.806 -0.603 D 96 94 3 97 3 0 0 20 39 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 18 - C - - - ML 98 97 3 100 3 1 1 18 36 -12.276 -0.001 -10.930 -6.364 1.884 -2.106 -3.927 D 99 97 3 100 3 0 0 19 38 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 19 - g - - - ML 101 100 3 103 3 1 1 17 35 -12.276 -0.001 -10.930 -4.798 0.890 0.943 -2.409 D 102 100 3 103 3 0 0 18 37 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 20 - U - - - ML 104 103 3 106 3 1 1 15 34 -12.276 -0.001 -10.930 -8.695 -7.761 -9.806 1.997 D 105 103 3 106 3 0 0 17 36 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 21 - A - - - ML 107 106 3 109 3 1 1 14 33 -12.276 -0.001 -10.930 1.667 -3.924 -2.745 -0.716 D 108 106 3 109 3 0 0 16 35 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 22 - A - - - ML 110 109 3 112 3 1 1 13 31 -12.276 -0.001 -10.930 1.825 -1.981 -3.427 -3.174 D 111 109 3 112 3 0 0 15 34 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 23 - A - - - ML 113 112 3 115 3 1 1 12 30 -12.276 -0.001 -10.930 1.608 -0.990 -2.076 -2.239 D 114 112 3 115 3 0 0 14 33 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 24 - A - - - ML 116 115 3 118 3 1 1 10 28 -12.276 -0.631 -1.498 1.885 -2.385 -3.443 -5.464 D 117 115 3 118 3 0 0 13 32 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 25 - g - - - ML 119 118 3 121 2 1 1 1 1 * 0.000 0.320 0.168 0.390 -1.653 D 120 118 3 121 2 0 0 0 0 * 0.000 IL 121 121 3 121 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 37 ] - - - - - - E 122 121 3 -1 0 0 0 0 0 [ BEGR 38 ] - - - - - - S 123 60 1 124 3 0 6 68 125 -12.276 -0.001 -10.930 IL 124 124 2 124 3 1 4 70 127 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 32 - A - - - ML 125 124 2 127 3 1 6 68 125 -12.276 -0.001 -10.930 1.022 -1.638 0.333 -1.364 D 126 124 2 127 3 0 0 66 123 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 4 69 126 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 33 - a - - - ML 128 127 3 130 3 1 5 67 124 -12.276 -0.001 -10.930 0.467 -0.229 0.318 -0.947 D 129 127 3 130 3 0 0 65 122 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 3 68 125 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 34 - c - - - ML 131 130 3 133 3 1 4 66 123 -12.276 -0.001 -10.930 0.242 0.744 -1.004 -0.635 D 132 130 3 133 3 0 0 64 121 -6.174 -1.687 -0.566 IL 133 133 3 133 3 1 2 67 124 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 35 - g - - - ML 134 133 3 136 3 1 3 65 122 -12.276 -0.001 -10.930 -0.157 -0.223 0.588 -0.429 D 135 133 3 136 3 0 0 63 119 -6.174 -1.687 -0.566 IL 136 136 3 136 3 1 2 66 123 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 36 - g - - - ML 137 136 3 139 3 1 2 64 121 -12.276 -0.006 -8.067 -0.019 0.103 0.323 -0.538 D 138 136 3 139 3 0 0 62 118 -6.174 -1.687 -0.566 IL 139 139 3 139 3 1 2 65 122 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 37 - a - - - ML 140 139 3 142 3 1 1 63 120 -12.271 -0.636 -1.489 0.661 0.417 -0.904 -0.864 D 141 139 3 142 3 0 0 60 116 -6.844 -2.357 -0.329 IL 142 142 3 142 3 1 1 65 122 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 38 - a - - - ML 143 142 3 145 5 1 1 64 120 -1.556 -0.603 -10.401 -10.613 -11.505 0.460 -0.454 -0.621 0.316 D 144 142 3 145 5 0 0 56 112 -4.866 -0.066 -9.468 -7.843 -7.755 IL 145 145 3 145 5 1 1 66 123 -0.470 -1.859 -9.533 -11.366 -10.639 0.000 0.000 0.000 0.000 [ MATP 46 ] 49 66 G C - - MP 146 145 3 150 6 2 2 27 45 -12.237 -12.176 -0.002 -10.952 -11.232 -11.627 -6.736 -5.431 1.439 -0.334 -7.193 -7.139 0.505 -7.052 -6.918 3.135 -2.078 -3.064 -2.841 -6.457 0.767 -5.488 ML 147 145 3 150 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 3 150 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 3 150 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 50 65 G C - - MP 152 151 6 156 6 2 2 25 43 -12.237 -12.176 -0.002 -10.952 -11.232 -11.627 -9.716 -6.773 -10.726 -4.083 -10.673 -8.005 -0.565 -10.656 -8.121 3.883 -8.335 -2.291 -1.861 -8.378 -7.790 -9.622 ML 153 151 6 156 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 22 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 51 64 u a - - MP 158 157 6 162 6 2 2 22 41 -12.237 -12.176 -0.002 -10.952 -11.232 -11.627 -6.996 -6.284 -6.910 1.870 -6.163 -7.659 0.898 -6.680 -6.917 2.122 -7.345 -3.873 2.555 -7.048 -3.623 -5.618 ML 159 157 6 162 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 21 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 52 63 G C - - MP 164 163 6 168 4 2 2 20 39 -11.361 -2.212 -0.353 -9.983 -7.813 -6.075 -7.762 -2.735 -8.395 -7.595 1.234 -8.234 -2.996 3.678 -3.870 -2.457 -3.970 -7.300 -2.291 -6.705 ML 165 163 6 168 4 1 1 22 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 4 1 1 21 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 167 163 6 168 4 0 0 21 38 -4.568 -4.250 -2.265 -0.520 IL 168 168 5 168 4 1 1 23 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 169 169 6 169 3 1 1 19 38 -4.888 -0.057 -7.589 0.000 0.000 0.000 0.000 [ MATL 50 ] 53 - A - - - ML 170 169 6 172 3 1 1 18 37 -12.276 -0.090 -4.048 1.488 -3.075 0.031 -4.191 D 171 169 6 172 3 0 0 19 38 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 54 - a - - - ML 173 172 3 175 3 1 1 17 35 -12.187 -0.719 -1.350 0.324 0.032 -0.921 0.261 D 174 172 3 175 3 0 0 16 35 -9.760 -5.273 -0.040 IL 175 175 3 175 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 55 - g - - - ML 176 175 3 178 3 1 1 16 34 -1.568 -0.596 -10.123 -0.521 -0.673 0.750 -0.009 D 177 175 3 178 3 0 0 15 33 -12.490 -0.013 -6.881 IL 178 178 3 178 3 1 1 16 34 -4.747 -0.063 -7.447 0.000 0.000 0.000 0.000 [ MATL 53 ] 57 - G - - - ML 179 178 3 181 3 1 1 14 33 -12.276 -0.001 -10.930 -6.881 -8.651 1.994 -7.642 D 180 178 3 181 3 0 0 17 35 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 58 - C - - - ML 182 181 3 184 3 1 1 13 32 -12.276 -0.001 -10.930 -1.906 1.488 -5.596 -0.140 D 183 181 3 184 3 0 0 16 34 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 59 - a - - - ML 185 184 3 187 3 1 1 12 30 -12.276 -0.001 -10.930 0.547 -2.310 0.478 -0.084 D 186 184 3 187 3 0 0 15 33 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 60 - A - - - ML 188 187 3 190 3 1 1 10 28 -12.276 -0.001 -10.930 1.995 -8.386 -7.642 -7.770 D 189 187 3 190 3 0 0 13 32 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 61 - C - - - ML 191 190 3 193 2 1 1 1 1 * 0.000 -0.950 1.791 -7.176 -6.146 D 192 190 3 193 2 0 0 0 0 * 0.000 IL 193 193 3 193 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 58 ] - - - - - - E 194 193 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME GP20-b ACC RF03003 DESC GP20-b RNA LENG 62 MAXL 115 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 9 19:16:32 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03003/CM NSEQ 210 EFFN 198.108673 CKSUM 2824735036 STATS LOCAL MSV -8.4066 0.72235 STATS LOCAL VITERBI -9.0813 0.72235 STATS LOCAL FORWARD -3.0245 0.72235 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.14098 1.38879 1.32857 1.79419 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 0.00000 * 1 2.34622 2.67503 0.72499 1.04687 1 g - - : 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 2 6.24534 2.85504 0.10502 3.21379 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 3 1.81328 0.91104 3.55526 0.90090 3 u - - : 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 4 4.26412 0.21829 6.56129 1.71130 4 C - - : 1.38629 1.38629 1.38629 1.38629 0.03249 7.66011 3.45774 1.46634 0.26236 1.09861 0.40547 5 1.10688 1.52783 1.52483 1.44924 5 a - - : 1.38629 1.38629 1.38629 1.38629 0.15204 7.62859 1.96215 1.46634 0.26236 4.23185 0.01463 6 1.31164 2.51761 0.75337 1.71929 6 g - - : 1.38629 1.38629 1.38629 1.38629 0.20536 7.47769 1.68696 1.46634 0.26236 5.87731 0.00281 7 1.72391 1.22024 1.33736 1.33205 7 c - - : 1.38629 1.38629 1.38629 1.38629 0.96387 0.49522 4.69405 0.19045 1.75210 0.01726 4.06771 8 3.55270 0.97980 0.91966 1.62298 10 g - - < 1.38629 1.38629 1.38629 1.38629 0.00522 7.64975 5.35419 1.46634 0.26236 0.84474 0.56154 9 1.36448 1.02708 1.64888 1.63902 11 c - - < 1.38629 1.38629 1.38629 1.38629 0.00491 7.65011 5.42032 1.46634 0.26236 0.08655 2.49000 10 2.05770 1.62470 0.76617 1.55831 12 g - - < 1.38629 1.38629 1.38629 1.38629 0.01105 7.65620 4.55458 1.46634 0.26236 0.19483 1.73147 11 1.38534 1.05040 1.74342 1.49146 13 c - - < 1.38629 1.38629 1.38629 1.38629 0.00095 7.65006 7.65006 1.46634 0.26236 3.18775 0.04214 12 0.61924 1.65847 1.68111 2.46456 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.16616 1.90346 5.51137 0.00638 5.05854 0.08613 2.49460 13 1.94105 6.82457 0.16873 4.54469 16 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00095 7.65658 7.65658 1.46634 0.26236 0.21157 1.65711 14 0.95907 4.29490 0.81844 1.82021 17 g - - _ 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 15 6.74902 0.08018 2.79494 4.21592 18 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 16 6.18788 0.74648 0.72873 3.18462 19 g - - _ 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 17 8.80426 7.95163 9.76487 0.00056 20 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 18 0.22380 4.43625 3.36299 1.87046 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 19 0.11238 2.78390 3.88245 3.73379 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 20 0.26497 2.06584 2.85622 3.02459 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 21 0.07262 3.04826 3.88106 6.22770 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.44572 7.66011 1.02397 1.46634 0.26236 1.09861 0.40547 22 1.16079 1.23084 1.08982 2.83983 25 g - - _ 1.38629 1.38629 1.38629 1.38629 0.23463 1.64610 4.11425 0.00761 4.88269 0.00262 5.94562 23 1.37532 1.30479 1.32178 1.56373 27 c - - > 1.38629 1.38629 1.38629 1.38629 0.00095 7.65006 7.65006 1.46634 0.26236 3.18775 0.04214 24 1.05167 1.96519 1.05434 1.81958 28 a - - > 1.38629 1.38629 1.38629 1.38629 0.00095 7.65006 7.65006 1.46634 0.26236 0.08613 2.49460 25 2.31833 0.83139 1.01414 2.26910 29 c - - > 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 26 1.77332 1.67745 0.94625 1.36576 30 g - - > 1.38629 1.38629 1.38629 1.38629 0.01061 7.66011 4.59664 1.46634 0.26236 1.09861 0.40547 27 1.67024 1.03114 0.85763 3.47269 31 g - - > 1.38629 1.38629 1.38629 1.38629 0.00095 7.65045 7.65045 1.46634 0.26236 0.08934 2.45967 28 0.65994 2.58833 1.13637 2.44197 32 A - - - 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 29 1.05446 1.53486 1.14203 2.14589 33 a - - - 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 30 1.21686 0.83918 2.10756 1.89550 34 c - - - 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 31 1.51877 1.53030 0.94904 1.72913 35 g - - - 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 32 1.41589 1.29412 1.13604 1.81977 36 g - - - 1.38629 1.38629 1.38629 1.38629 0.00421 7.66011 5.59007 1.46634 0.26236 1.09861 0.40547 33 0.91304 1.06947 2.03615 2.07962 37 a - - - 1.38629 1.38629 1.38629 1.38629 0.43001 7.65685 1.05260 1.46634 0.26236 2.29507 0.10620 34 1.05567 1.70743 1.83370 1.16832 38 a - - - 1.38629 1.38629 1.38629 1.38629 0.45431 1.00954 7.22828 1.31213 0.31368 0.00268 5.92311 35 1.50373 2.43023 0.55630 2.15109 49 G - - < 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 36 6.33582 3.12346 0.06575 4.02526 50 G - - < 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 37 1.44719 2.23421 1.28842 0.96237 51 u - - < 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 38 6.25535 1.88080 0.18357 4.31878 52 G - - < 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 39 0.35246 3.59281 1.35066 4.56083 53 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06377 7.66011 2.79184 1.46634 0.26236 1.09861 0.40547 40 1.15973 1.34662 2.05669 1.20920 54 a - - _ 1.38629 1.38629 1.38629 1.38629 0.50920 7.59735 0.91999 1.46634 0.26236 4.88353 0.00760 41 1.83031 1.86830 0.81838 1.41016 55 g - - _ 1.38629 1.38629 1.38629 1.38629 0.42692 1.05944 7.08981 0.00480 5.34106 0.00216 6.13699 42 7.09215 8.32071 0.00157 7.61879 57 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 43 2.76488 0.34169 6.23200 1.49395 58 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 44 0.99500 3.18985 1.03028 1.46020 59 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 45 0.00128 8.11301 7.58317 7.65894 60 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 46 1.99940 0.14753 7.45952 6.75204 61 C - - _ 1.38629 1.38629 1.38629 1.38629 0.24705 1.52131 7.66011 0.00431 5.44910 1.09861 0.40547 47 4.72076 0.20833 1.77688 4.60623 63 C - - > 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 48 0.96568 1.29178 2.22373 1.44270 64 a - - > 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 49 4.02550 0.07827 3.12158 4.31664 65 C - - > 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 50 5.86197 0.58603 0.91413 3.22502 66 C - - > 1.38629 1.38629 1.38629 1.38629 0.15082 1.96949 7.66011 0.12667 2.12885 1.09861 0.40547 51 8.80426 7.95163 9.76487 0.00056 69 U - - : 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 52 0.05449 6.61544 3.93800 3.43576 70 A - - : 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 53 0.23388 2.66044 3.72648 2.16677 71 A - - : 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 54 0.02492 4.30942 6.83971 4.59516 72 A - - : 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 55 0.02968 7.05467 4.56056 4.02169 73 A - - : 1.38629 1.38629 1.38629 1.38629 0.57321 7.66011 0.83053 1.46634 0.26236 1.09861 0.40547 56 0.39267 1.33171 5.60194 2.86413 74 A - - : 1.38629 1.38629 1.38629 1.38629 0.20530 1.68867 7.08857 0.26719 1.45041 0.00216 6.13859 57 0.19196 1.92365 6.20505 3.62814 77 A - - : 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 58 1.56466 6.25589 0.27529 3.52107 78 G - - : 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 59 3.95011 0.04500 6.97985 3.73736 79 C - - : 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 60 3.35473 0.83334 0.79282 2.55209 80 g - - : 1.38629 1.38629 1.38629 1.38629 0.00532 7.66011 5.33139 1.46634 0.26236 1.09861 0.40547 61 3.29931 3.84757 6.41221 0.06175 81 U - - : 1.38629 1.38629 1.38629 1.38629 0.00095 7.65574 7.65574 1.46634 0.26236 2.50673 0.08505 62 0.00129 8.10888 7.57905 7.65486 82 A - - : 1.38629 1.38629 1.38629 1.38629 0.00047 7.65527 * 1.46634 0.26236 0.00000 * //