INFERNAL1/a [1.1.5 | Sep 2023] NAME lysM-Prevotella ACC RF03002 DESC lysM-Prevotella RNA STATES 207 NODES 62 CLEN 66 W 82 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 00:27:18 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03002/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 47 EFFN 2.860046 CKSUM 3641846241 NULL 0.000 0.000 0.000 0.000 GA 66.60 TC 68.40 NC 66.30 EFP7GF -11.0386 0.71896 ECMLC 0.55036 -6.45120 4.19941 1600000 421587 0.002846 ECMGC 0.41804 -15.10044 -2.31472 1600000 83817 0.004772 ECMLI 0.53030 -4.62193 5.70170 1600000 286279 0.004192 ECMGI 0.44906 -10.44126 0.88433 1600000 64686 0.006184 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 82 102 -7.286 -7.493 -0.042 -5.907 IL 1 1 2 1 4 2 29 86 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 2 28 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 3 29 82 102 -8.281 -0.017 -6.935 -1.108 1.019 -1.951 0.322 D 4 2 3 5 3 0 23 81 101 -6.174 -1.687 -0.566 IL 5 5 3 5 3 2 28 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 3 28 81 101 -8.281 -0.017 -6.935 -2.230 1.714 -3.066 -1.367 D 7 5 3 8 3 0 22 80 99 -6.174 -1.687 -0.566 IL 8 8 3 8 3 2 27 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - g - - - ML 9 8 3 11 3 2 27 80 100 -8.281 -0.017 -6.935 0.619 -1.734 0.778 -1.157 D 10 8 3 11 3 0 22 79 98 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 26 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - a - - - ML 12 11 3 14 3 2 27 79 98 -8.281 -0.017 -6.935 0.910 -1.096 -1.239 0.298 D 13 11 3 14 3 0 21 78 97 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 25 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 2 26 78 97 -8.281 -0.017 -6.935 -0.697 -1.098 -0.388 1.106 D 16 14 3 17 3 0 20 77 96 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 25 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 2 25 77 96 -8.281 -0.017 -6.935 1.310 -0.811 -1.448 -0.778 D 19 17 3 20 3 0 20 76 95 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 24 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 2 24 76 95 -8.281 -0.017 -6.935 -2.239 -3.549 1.837 -2.934 D 22 20 3 23 3 0 19 75 94 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 23 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 23 75 94 -8.281 -0.017 -6.935 1.826 -3.013 -2.583 -2.621 D 25 23 3 26 3 0 18 74 93 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 23 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 22 74 93 -4.654 -0.071 -6.935 1.140 -1.245 -1.337 -0.031 D 28 26 3 29 3 0 18 72 91 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 22 75 94 -1.587 -0.699 -4.287 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - A - - - ML 30 29 3 32 3 1 22 73 92 -8.653 -0.015 -6.970 1.727 -2.526 -1.802 -2.125 D 31 29 3 32 3 0 17 71 90 -5.620 -0.734 -1.403 IL 32 32 3 32 3 1 21 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 71 - C - - MR 33 32 3 35 3 1 21 72 91 -8.653 -0.015 -6.970 -1.903 1.609 -2.753 -0.905 D 34 32 3 35 3 0 15 70 89 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 20 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 70 - A - - MR 36 35 3 38 3 1 20 71 90 -8.653 -0.015 -6.970 1.826 -3.013 -2.583 -2.621 D 37 35 3 38 3 0 15 69 88 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 19 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 69 - A - - MR 39 38 3 41 3 1 19 70 89 -8.653 -0.015 -6.970 1.742 -2.583 -1.895 -2.186 D 40 38 3 41 3 0 14 68 87 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 18 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 68 - U - - MR 42 41 3 44 3 1 18 69 88 -8.653 -0.015 -6.970 -1.362 -0.785 -2.111 1.485 D 43 41 3 44 3 0 13 67 86 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 18 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 67 - A - - MR 45 44 3 47 3 1 18 68 87 -8.653 -0.015 -6.970 1.826 -3.013 -2.583 -2.621 D 46 44 3 47 3 0 13 66 85 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 17 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 66 - A - - MR 48 47 3 50 3 1 17 67 86 -8.653 -0.015 -6.970 1.826 -3.013 -2.583 -2.621 D 49 47 3 50 3 0 12 65 84 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 16 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 65 - A - - MR 51 50 3 53 3 1 16 66 85 -8.653 -0.015 -6.970 1.826 -3.013 -2.583 -2.621 D 52 50 3 53 3 0 11 64 83 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 15 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 64 - A - - MR 54 53 3 56 3 1 15 65 84 -8.653 -0.015 -6.970 1.652 -2.124 -1.988 -1.408 D 55 53 3 56 3 0 11 63 82 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 15 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 63 - U - - MR 57 56 3 59 3 1 14 63 83 -8.653 -0.015 -6.970 -1.227 -0.476 -1.983 1.379 D 58 56 3 59 3 0 10 62 81 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 14 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 62 - A - - MR 60 59 3 62 3 1 14 62 82 -8.653 -0.015 -6.970 1.826 -3.013 -2.583 -2.621 D 61 59 3 62 3 0 9 61 80 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 13 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 61 - A - - MR 63 62 3 65 3 1 13 61 81 -8.653 -0.043 -5.233 1.826 -3.013 -2.583 -2.621 D 64 62 3 65 3 0 9 60 79 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 12 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 60 - A - - MR 66 65 3 68 3 1 12 60 80 -8.626 -0.015 -6.943 1.819 -2.955 -2.530 -2.558 D 67 65 3 68 3 0 8 59 78 -6.642 -1.820 -0.501 IR 68 68 3 68 3 1 12 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 59 - G - - MR 69 68 3 71 3 1 11 59 79 -8.626 -0.193 -3.024 -2.182 -3.485 1.829 -2.871 D 70 68 3 71 3 0 8 58 77 -6.642 -1.820 -0.501 IR 71 71 3 71 3 1 12 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 58 - a - - MR 72 71 3 74 3 1 11 59 78 -8.450 -0.017 -6.767 0.841 -0.449 -0.462 -0.414 D 73 71 3 74 3 0 7 57 76 -7.620 -0.479 -1.850 IR 74 74 3 74 3 1 10 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 57 - U - - MR 75 74 3 77 3 1 10 58 77 -8.653 -0.015 -6.970 -1.142 -0.256 -1.905 1.288 D 76 74 3 77 3 0 5 56 75 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 9 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 56 - u - - MR 78 77 3 80 3 1 9 57 76 -8.653 -0.015 -6.970 0.372 -0.910 -0.417 0.510 D 79 77 3 80 3 0 5 55 74 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 9 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 55 - U - - MR 81 80 3 83 3 1 8 56 75 -8.653 -0.015 -6.970 -2.087 -1.981 -2.845 1.754 D 82 80 3 83 3 0 4 54 73 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 8 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 54 - G - - MR 84 83 3 86 3 1 8 55 74 -8.653 -0.015 -6.970 -2.239 -3.549 1.837 -2.934 D 85 83 3 86 3 0 4 53 72 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 7 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 53 - A - - MR 87 86 3 89 3 1 7 54 73 -8.653 -0.015 -6.970 1.826 -3.013 -2.583 -2.621 D 88 86 3 89 3 0 3 52 71 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 6 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 52 - g - - MR 90 89 3 92 3 1 6 53 72 -2.711 -0.253 -6.970 -0.086 -1.158 0.674 0.021 D 91 89 3 92 3 0 3 51 70 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 6 53 72 -2.606 -0.320 -4.844 0.000 0.000 0.000 0.000 [ MATR 31 ] - 50 - c - - MR 93 92 3 95 3 1 5 51 70 -8.653 -0.015 -6.970 -0.332 0.614 -1.439 0.385 D 94 92 3 95 3 0 2 50 69 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 5 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 49 - C - - MR 96 95 3 98 3 1 4 50 69 -8.653 -0.015 -6.970 -1.155 1.093 -2.003 0.225 D 97 95 3 98 3 0 2 49 68 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 4 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 48 - U - - MR 99 98 3 101 2 1 3 49 68 -8.729 -0.003 -2.087 -1.981 -2.845 1.754 D 100 98 3 101 2 0 2 48 67 -4.432 -0.068 IR 101 101 3 101 2 1 3 50 69 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 34 ] - - - - - - B 102 101 3 103 165 0 2 48 67 [ BEGL 35 ] - - - - - - S 103 102 1 104 4 0 0 34 53 -0.039 -7.014 -6.422 -7.062 [ MATP 36 ] 12 32 G C - - MP 104 103 1 108 6 2 2 34 53 -9.246 -9.185 -0.019 -7.962 -8.242 -8.637 -5.360 -3.394 -5.544 -0.228 -6.096 -4.926 -1.306 -5.811 -4.707 3.757 -5.005 -1.124 -1.677 -4.866 -3.381 -4.412 ML 105 103 1 108 6 1 1 33 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 106 103 1 108 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 107 103 1 108 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 108 108 5 108 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 109 109 6 109 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 13 31 G C - - MP 110 109 6 114 6 2 2 32 51 -9.246 -9.185 -0.019 -7.962 -8.242 -8.637 -5.360 -3.394 -5.544 -0.228 -6.096 -4.926 -1.306 -5.811 -4.707 3.757 -5.005 -1.124 -1.677 -4.866 -3.381 -4.412 ML 111 109 6 114 6 1 1 31 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 112 109 6 114 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 113 109 6 114 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 114 114 5 114 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 115 115 6 115 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 14 30 G C - - MP 116 115 6 120 6 2 2 30 49 -9.246 -9.185 -0.019 -7.962 -8.242 -8.637 -4.158 -2.815 -4.153 1.567 -4.895 -4.677 -0.247 -4.541 -4.093 3.308 -4.475 -0.434 -0.539 -4.095 -2.244 -3.045 ML 117 115 6 120 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 6 120 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 6 120 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 15 29 A U - - MP 122 121 6 126 6 2 2 28 47 -9.246 -9.185 -0.019 -7.962 -8.242 -8.637 -4.091 -2.990 -4.139 3.487 -5.070 -5.926 -0.748 -4.241 -3.984 0.784 -4.578 0.260 -0.981 -4.879 -2.652 -2.936 ML 123 121 6 126 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 16 28 c g - - MP 128 127 6 132 6 2 2 26 45 -9.246 -9.185 -0.019 -7.962 -8.242 -8.637 -4.250 -4.278 -3.996 -0.538 -2.745 -4.438 2.812 -3.529 -4.030 -0.375 -4.346 -2.343 0.796 -4.328 2.275 -2.888 ML 129 127 6 132 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 6 132 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 17 27 a u - - MP 134 133 6 138 4 2 2 24 43 -7.286 -7.493 -0.042 -5.907 -0.757 -1.782 -0.896 1.692 -1.772 -2.634 1.401 -1.831 -1.853 1.032 -2.424 -0.432 1.428 -1.923 -0.018 -0.357 ML 135 133 6 138 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 137 133 6 138 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 138 138 5 138 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 139 139 6 139 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 18 - U - - - ML 140 139 6 142 3 1 1 21 40 -8.281 -0.017 -6.935 -2.087 -1.981 -2.845 1.754 D 141 139 6 142 3 0 0 20 39 -6.174 -1.687 -0.566 IL 142 142 3 142 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 19 - G - - - ML 143 142 3 145 3 1 1 20 39 -8.281 -0.017 -6.935 -0.380 -2.238 1.436 -1.673 D 144 142 3 145 3 0 0 19 38 -6.174 -1.687 -0.566 IL 145 145 3 145 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 20 - A - - - ML 146 145 3 148 3 1 1 19 37 -8.281 -0.017 -6.935 1.512 -2.013 -0.843 -1.547 D 147 145 3 148 3 0 0 18 37 -6.174 -1.687 -0.566 IL 148 148 3 148 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 21 - A - - - ML 149 148 3 151 3 1 1 18 36 -6.013 -0.035 -6.935 1.086 -0.364 -1.101 -0.659 D 150 148 3 151 3 0 0 17 35 -6.174 -1.687 -0.566 IL 151 151 3 151 3 1 1 20 39 -1.492 -0.762 -4.192 0.000 0.000 0.000 0.000 [ MATL 46 ] 23 - A - - - ML 152 151 3 154 3 1 1 16 35 -8.281 -0.017 -6.935 1.826 -3.013 -2.583 -2.621 D 153 151 3 154 3 0 0 16 34 -6.174 -1.687 -0.566 IL 154 154 3 154 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 24 - A - - - ML 155 154 3 157 3 1 1 15 33 -8.281 -0.017 -6.935 1.826 -3.013 -2.583 -2.621 D 156 154 3 157 3 0 0 15 33 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 25 - U - - - ML 158 157 3 160 3 1 1 13 31 -8.281 -0.017 -6.935 -0.712 -1.142 -1.168 1.317 D 159 157 3 160 3 0 0 13 32 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 26 - c - - - ML 161 160 3 163 2 1 1 1 1 * 0.000 -0.818 0.983 -1.756 0.215 D 162 160 3 163 2 0 0 0 0 * 0.000 IL 163 163 3 163 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 50 ] - - - - - - E 164 163 3 -1 0 0 0 0 0 [ BEGR 51 ] - - - - - - S 165 102 1 166 3 0 0 26 45 -8.281 -0.017 -6.935 IL 166 166 2 166 3 1 1 31 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 33 - G - - - ML 167 166 2 169 5 1 1 26 44 -5.355 -0.059 -7.189 -7.401 -8.293 -1.554 -3.070 1.749 -2.488 D 168 166 2 169 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 169 169 3 169 5 1 1 26 45 -2.496 -0.462 -4.175 -6.007 -5.281 0.000 0.000 0.000 0.000 [ MATP 53 ] 35 47 u a - - MP 170 169 3 174 6 2 2 25 43 -9.246 -9.185 -0.019 -7.962 -8.242 -8.637 -3.483 -3.120 -3.495 0.556 -2.888 -4.265 1.490 -3.392 -3.494 1.838 -3.966 -0.938 2.571 -3.683 -0.544 -2.385 ML 171 169 3 174 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 172 169 3 174 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 173 169 3 174 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 174 174 5 174 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 175 175 6 175 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 36 46 G C - - MP 176 175 6 180 6 2 2 23 41 -9.246 -9.185 -0.019 -7.962 -8.242 -8.637 -3.893 -2.905 -3.827 0.672 -3.734 -4.365 1.556 -4.001 -3.908 3.063 -4.272 -0.618 0.310 -3.807 -1.254 -2.745 ML 177 175 6 180 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 178 175 6 180 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 179 175 6 180 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 180 180 5 180 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 181 181 6 181 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 37 45 C G - - MP 182 181 6 186 6 2 2 21 39 -9.246 -9.185 -0.019 -7.962 -8.242 -8.637 -5.253 -5.218 -4.818 -1.401 -3.401 -5.137 3.721 -4.281 -4.900 -1.241 -5.076 -3.183 0.031 -5.273 -1.133 -3.719 ML 183 181 6 186 6 1 1 20 38 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 184 181 6 186 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 185 181 6 186 6 0 0 18 36 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 186 186 5 186 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 187 187 6 187 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 38 44 C G - - MP 188 187 6 192 4 2 2 19 37 -7.286 -1.787 -0.541 -5.907 -4.166 -4.115 -3.962 -0.283 -2.749 -4.467 3.109 -3.507 -3.969 -0.081 -4.320 -2.055 1.942 -4.266 -0.404 -2.805 ML 189 187 6 192 4 1 1 19 37 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 190 187 6 192 4 1 1 18 36 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 191 187 6 192 4 0 0 17 35 -4.568 -4.250 -2.265 -0.520 IL 192 192 5 192 4 1 1 20 38 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 193 193 6 193 3 1 1 18 36 -2.269 -0.395 -4.969 0.000 0.000 0.000 0.000 [ MATL 57 ] 39 - u - - - ML 194 193 6 196 3 1 1 16 35 -8.281 -0.017 -6.935 0.017 -0.996 0.274 0.353 D 195 193 6 196 3 0 0 16 34 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 40 - u - - - ML 197 196 3 199 3 1 1 15 33 -8.281 -0.017 -6.935 0.110 0.248 -0.944 0.279 D 198 196 3 199 3 0 0 15 33 -6.174 -1.687 -0.566 IL 199 199 3 199 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 41 - u - - - ML 200 199 3 202 3 1 1 13 31 -8.281 -0.017 -6.935 0.190 -0.425 -1.195 0.746 D 201 199 3 202 3 0 0 13 32 -6.174 -1.687 -0.566 IL 202 202 3 202 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 42 - a - - - ML 203 202 3 205 2 1 1 1 1 * 0.000 0.872 -0.793 -0.981 0.120 D 204 202 3 205 2 0 0 0 0 * 0.000 IL 205 205 3 205 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 61 ] - - - - - - E 206 205 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME lysM-Prevotella ACC RF03002 DESC lysM-Prevotella RNA LENG 66 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 00:27:19 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03002/CM NSEQ 47 EFFN 3.697693 CKSUM 3641846241 STATS LOCAL MSV -7.8481 0.71896 STATS LOCAL VITERBI -8.7481 0.71896 STATS LOCAL FORWARD -3.2120 0.71896 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.07535 1.59936 1.47086 1.48250 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 0.00000 * 1 2.32929 0.61441 2.93584 1.17574 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 2 3.26523 0.14712 3.83452 2.56383 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 3 0.93319 2.76984 0.79468 2.38264 3 g - - : 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 4 0.71326 2.24776 2.34926 1.17480 4 a - - : 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 5 2.00315 2.27414 1.65812 0.55913 5 U - - : 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 6 0.42408 1.97976 2.54207 2.04930 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 7 3.24893 4.19065 0.08052 3.75445 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 8 0.08568 3.79592 3.46979 3.55685 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 9 0.54714 2.36502 2.43654 1.42717 9 A - - : 1.38629 1.38629 1.38629 1.38629 0.07290 2.89229 4.20910 0.47021 0.98048 1.09861 0.40547 10 0.14925 3.38340 2.78836 3.14212 11 A - - : 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 11 2.96159 3.79976 0.10287 3.74470 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 12 2.95724 3.79348 0.10350 3.73616 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 13 1.58597 2.98726 0.37549 2.84951 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 14 0.25275 3.52454 1.85289 3.29438 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 15 3.15697 0.75887 2.97081 0.82556 16 c - - < 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 16 1.18305 1.58648 1.64104 1.21998 17 a - - < 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 17 3.14385 3.02055 3.67768 0.12463 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 18 1.71266 3.14457 0.33721 2.76824 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 19 0.29168 2.98332 2.00696 2.68864 20 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 20 0.58186 1.63175 2.24576 1.96818 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04433 3.55789 4.20910 0.84055 0.56470 1.09861 0.40547 21 0.08568 3.79592 3.46979 3.55685 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 22 0.08568 3.79592 3.46979 3.55685 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 23 1.99599 2.31774 2.27364 0.41145 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 24 2.07388 0.64023 2.76670 1.25785 26 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 25 1.41500 1.80474 1.32174 1.12121 27 u - - > 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 26 2.25625 3.12731 0.22661 2.91531 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 27 3.48749 2.41364 3.31112 0.17024 29 U - - > 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 28 3.07977 0.42715 2.79861 1.42391 30 C - - > 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 29 3.87994 0.12637 3.62736 2.63841 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 30 3.86571 0.12714 3.62029 2.63573 32 C - - > 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 31 2.65700 3.79628 0.13471 3.39855 33 G - - - 1.38629 1.38629 1.38629 1.38629 0.05399 3.27801 4.20910 0.66051 0.72689 1.09861 0.40547 32 2.32039 1.74994 1.33846 0.76415 35 u - - < 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 33 2.24168 1.63988 0.51397 2.28672 36 G - - < 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 34 3.79224 0.13302 3.62994 2.58381 37 C - - < 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 35 2.93105 0.53777 2.70343 1.21864 38 C - - < 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 36 1.39704 2.15300 1.15606 1.13378 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 37 1.31891 1.17618 2.08654 1.20397 40 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 38 1.25085 1.69924 2.28862 0.84511 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 39 0.74389 1.98600 2.13039 1.31414 42 a - - _ 1.38629 1.38629 1.38629 1.38629 0.39672 1.16277 4.20910 0.09250 2.42649 1.09861 0.40547 40 1.35005 2.87045 0.48424 2.68918 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 41 2.86748 3.79708 0.11391 3.56205 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 42 2.54074 0.56391 1.54604 1.97241 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 43 0.84216 1.43427 1.58591 2.07011 47 a - - > 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 44 3.14385 3.02055 3.67768 0.12463 48 U - - : 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 45 2.36887 0.56321 2.97904 1.25108 49 C - - : 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 46 1.67260 0.90137 2.50353 1.12568 50 c - - : 1.38629 1.38629 1.38629 1.38629 0.23073 1.65452 4.20910 0.14880 1.97865 1.09861 0.40547 47 1.48632 2.28462 0.86071 1.38981 52 g - - : 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 48 0.08568 3.79592 3.46979 3.55685 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 49 3.24893 4.19065 0.08052 3.75445 54 G - - : 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 50 3.14385 3.02055 3.67768 0.12463 55 U - - : 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 51 1.11759 2.08593 1.67883 1.01570 56 u - - : 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 52 2.36178 1.57561 2.89737 0.44053 57 U - - : 1.38629 1.38629 1.38629 1.38629 0.20318 4.20910 1.77781 1.46634 0.26236 1.09861 0.40547 53 0.76663 1.69801 1.72282 1.74976 58 a - - : 1.38629 1.38629 1.38629 1.38629 0.03577 4.04169 4.04169 1.46634 0.26236 0.30045 1.34894 54 3.20915 4.14690 0.08406 3.71251 59 G - - : 1.38629 1.38629 1.38629 1.38629 0.03085 4.18701 4.18701 1.46634 0.26236 1.49753 0.25319 55 0.08954 3.75388 3.43112 3.51076 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.03085 4.18701 4.18701 1.46634 0.26236 0.59305 0.80438 56 0.08568 3.79592 3.46979 3.55685 61 A - - : 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 57 0.08568 3.79592 3.46979 3.55685 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 58 2.43219 1.75151 2.96088 0.37561 63 U - - : 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 59 0.19647 3.05794 2.97828 2.51933 64 A - - : 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 60 0.08568 3.79592 3.46979 3.55685 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 61 0.08568 3.79592 3.46979 3.55685 66 A - - : 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 62 0.08568 3.79592 3.46979 3.55685 67 A - - : 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 63 2.54072 2.00030 3.06259 0.30228 68 U - - : 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 64 0.13971 3.42980 2.86662 3.19168 69 A - - : 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 65 0.08568 3.79592 3.46979 3.55685 70 A - - : 1.38629 1.38629 1.38629 1.38629 0.03017 4.20910 4.20910 1.46634 0.26236 1.09861 0.40547 66 2.99377 0.21328 3.58622 2.16922 71 C - - : 1.38629 1.38629 1.38629 1.38629 0.01520 4.19413 * 1.46634 0.26236 0.00000 * //