INFERNAL1/a [1.1.4 | Dec 2020] NAME lysM-Prevotella ACC RF03002 DESC lysM-Prevotella RNA STATES 207 NODES 62 CLEN 66 W 82 ALPH RNA RF no CONS yes MAP yes DATE Mon Oct 1 23:25:18 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 47 EFFN 2.871521 CKSUM 3641846241 NULL 0.000 0.000 0.000 0.000 GA 66.60 TC 66.60 NC 40.50 EFP7GF -11.0274 0.71896 ECMLC 0.54556 -6.58949 4.15991 1600000 422721 0.002839 ECMGC 0.40718 -15.49694 -2.35271 1600000 84418 0.004738 ECMLI 0.52851 -4.67144 5.68581 1600000 286063 0.004195 ECMGI 0.44167 -10.61406 0.89545 1600000 64529 0.006199 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 82 102 -7.290 -7.497 -0.042 -5.911 IL 1 1 2 1 4 2 29 87 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 2 29 86 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 3 29 82 102 -8.284 -0.016 -6.938 -1.104 1.009 -1.947 0.336 D 4 2 3 5 3 0 23 81 101 -6.174 -1.687 -0.566 IL 5 5 3 5 3 2 28 85 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 3 28 81 101 -8.284 -0.016 -6.938 -2.251 1.719 -3.087 -1.392 D 7 5 3 8 3 0 22 80 100 -6.174 -1.687 -0.566 IL 8 8 3 8 3 2 27 84 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - g - - - ML 9 8 3 11 3 2 27 80 100 -8.284 -0.016 -6.938 0.606 -1.741 0.793 -1.165 D 10 8 3 11 3 0 22 79 98 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 26 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - a - - - ML 12 11 3 14 3 2 27 79 99 -8.284 -0.016 -6.938 0.872 -1.081 -1.232 0.346 D 13 11 3 14 3 0 21 78 97 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 26 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 2 26 78 97 -8.284 -0.016 -6.938 -0.698 -1.100 -0.381 1.103 D 16 14 3 17 3 0 20 77 96 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 25 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 2 25 77 96 -8.284 -0.016 -6.938 1.327 -0.845 -1.466 -0.807 D 19 17 3 20 3 0 20 76 95 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 24 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 2 24 76 95 -8.284 -0.016 -6.938 -2.246 -3.557 1.838 -2.942 D 22 20 3 23 3 0 19 75 94 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 23 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 23 75 94 -8.284 -0.016 -6.938 1.827 -3.020 -2.589 -2.629 D 25 23 3 26 3 0 18 74 93 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 23 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 22 74 93 -4.426 -0.081 -6.938 1.137 -1.244 -1.337 -0.025 D 28 26 3 29 3 0 18 72 91 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 22 75 94 -1.612 -0.684 -4.313 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - A - - - ML 30 29 3 32 3 1 22 73 92 -8.656 -0.015 -6.974 1.715 -2.483 -1.726 -2.079 D 31 29 3 32 3 0 17 71 90 -5.620 -0.734 -1.403 IL 32 32 3 32 3 1 21 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 71 - C - - MR 33 32 3 35 3 1 21 72 91 -8.656 -0.015 -6.974 -1.930 1.618 -2.779 -0.938 D 34 32 3 35 3 0 15 70 89 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 20 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 70 - A - - MR 36 35 3 38 3 1 20 71 90 -8.656 -0.015 -6.974 1.827 -3.020 -2.589 -2.629 D 37 35 3 38 3 0 15 69 88 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 19 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 69 - A - - MR 39 38 3 41 3 1 19 70 89 -8.656 -0.015 -6.974 1.746 -2.600 -1.917 -2.205 D 40 38 3 41 3 0 14 68 87 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 18 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 68 - U - - MR 42 41 3 44 3 1 18 69 88 -8.656 -0.015 -6.974 -1.363 -0.778 -2.112 1.484 D 43 41 3 44 3 0 13 67 86 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 18 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 67 - A - - MR 45 44 3 47 3 1 18 68 87 -8.656 -0.015 -6.974 1.827 -3.020 -2.589 -2.629 D 46 44 3 47 3 0 13 66 85 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 17 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 66 - A - - MR 48 47 3 50 3 1 17 67 86 -8.656 -0.015 -6.974 1.827 -3.020 -2.589 -2.629 D 49 47 3 50 3 0 12 65 84 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 16 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 65 - A - - MR 51 50 3 53 3 1 16 66 85 -8.656 -0.015 -6.974 1.827 -3.020 -2.589 -2.629 D 52 50 3 53 3 0 11 64 83 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 15 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 64 - A - - MR 54 53 3 56 3 1 15 65 84 -8.656 -0.015 -6.974 1.641 -2.091 -1.966 -1.358 D 55 53 3 56 3 0 11 63 82 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 15 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 63 - U - - MR 57 56 3 59 3 1 14 64 83 -8.656 -0.015 -6.974 -1.209 -0.423 -1.967 1.359 D 58 56 3 59 3 0 10 62 81 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 14 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 62 - A - - MR 60 59 3 62 3 1 14 63 82 -8.656 -0.015 -6.974 1.827 -3.020 -2.589 -2.629 D 61 59 3 62 3 0 10 61 80 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 13 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 61 - A - - MR 63 62 3 65 3 1 13 62 81 -8.656 -0.041 -5.277 1.827 -3.020 -2.589 -2.629 D 64 62 3 65 3 0 9 60 79 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 12 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 60 - A - - MR 66 65 3 68 3 1 12 61 80 -8.630 -0.015 -6.948 1.820 -2.965 -2.539 -2.568 D 67 65 3 68 3 0 8 59 78 -6.633 -1.810 -0.505 IR 68 68 3 68 3 1 12 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 59 - G - - MR 69 68 3 71 3 1 11 60 79 -8.630 -0.219 -2.855 -2.191 -3.496 1.831 -2.881 D 70 68 3 71 3 0 8 58 77 -6.633 -1.810 -0.505 IR 71 71 3 71 3 1 12 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 58 - a - - MR 72 71 3 74 3 1 11 59 78 -8.429 -0.018 -6.747 0.837 -0.456 -0.455 -0.406 D 73 71 3 74 3 0 7 57 76 -7.709 -0.445 -1.939 IR 74 74 3 74 3 1 10 59 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 57 - U - - MR 75 74 3 77 3 1 10 58 77 -8.656 -0.015 -6.974 -1.143 -0.249 -1.907 1.286 D 76 74 3 77 3 0 5 56 75 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 9 58 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 56 - u - - MR 78 77 3 80 3 1 9 57 76 -8.656 -0.015 -6.974 0.361 -0.909 -0.453 0.539 D 79 77 3 80 3 0 5 55 74 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 9 57 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 55 - U - - MR 81 80 3 83 3 1 8 56 75 -8.656 -0.015 -6.974 -2.094 -1.987 -2.852 1.755 D 82 80 3 83 3 0 4 54 73 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 8 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 54 - G - - MR 84 83 3 86 3 1 8 55 74 -8.656 -0.015 -6.974 -2.246 -3.557 1.838 -2.942 D 85 83 3 86 3 0 4 53 72 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 7 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 53 - A - - MR 87 86 3 89 3 1 7 54 73 -8.656 -0.015 -6.974 1.827 -3.020 -2.589 -2.629 D 88 86 3 89 3 0 3 52 71 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 6 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 52 - g - - MR 90 89 3 92 3 1 6 53 72 -2.700 -0.255 -6.974 -0.112 -1.168 0.693 0.019 D 91 89 3 92 3 0 3 51 70 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 6 53 72 -2.612 -0.319 -4.850 0.000 0.000 0.000 0.000 [ MATR 31 ] - 50 - c - - MR 93 92 3 95 3 1 5 51 70 -8.656 -0.015 -6.974 -0.275 0.577 -1.410 0.385 D 94 92 3 95 3 0 2 50 69 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 5 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 49 - C - - MR 96 95 3 98 3 1 4 50 69 -8.656 -0.015 -6.974 -1.158 1.092 -2.006 0.227 D 97 95 3 98 3 0 2 49 68 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 4 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 48 - U - - MR 99 98 3 101 2 1 3 49 68 -8.733 -0.003 -2.094 -1.987 -2.852 1.755 D 100 98 3 101 2 0 2 48 68 -4.432 -0.068 IR 101 101 3 101 2 1 3 50 69 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 34 ] - - - - - - B 102 101 3 103 165 0 2 48 67 [ BEGL 35 ] - - - - - - S 103 102 1 104 4 0 0 34 53 -0.039 -7.016 -6.424 -7.064 [ MATP 36 ] 12 32 G C - - MP 104 103 1 108 6 2 2 34 53 -9.248 -9.187 -0.019 -7.964 -8.243 -8.638 -5.366 -3.398 -5.552 -0.233 -6.105 -4.928 -1.314 -5.819 -4.711 3.758 -5.009 -1.128 -1.684 -4.870 -3.389 -4.420 ML 105 103 1 108 6 1 1 33 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 106 103 1 108 6 1 1 33 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 107 103 1 108 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 108 108 5 108 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 109 109 6 109 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 13 31 G C - - MP 110 109 6 114 6 2 2 32 51 -9.248 -9.187 -0.019 -7.964 -8.243 -8.638 -5.366 -3.398 -5.552 -0.233 -6.105 -4.928 -1.314 -5.819 -4.711 3.758 -5.009 -1.128 -1.684 -4.870 -3.389 -4.420 ML 111 109 6 114 6 1 1 31 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 112 109 6 114 6 1 1 31 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 113 109 6 114 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 114 114 5 114 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 115 115 6 115 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 14 30 G C - - MP 116 115 6 120 6 2 2 30 49 -9.248 -9.187 -0.019 -7.964 -8.243 -8.638 -4.157 -2.815 -4.153 1.573 -4.896 -4.678 -0.248 -4.541 -4.094 3.306 -4.475 -0.434 -0.540 -4.095 -2.245 -3.044 ML 117 115 6 120 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 6 120 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 6 120 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 15 29 A U - - MP 122 121 6 126 6 2 2 28 47 -9.248 -9.187 -0.019 -7.964 -8.243 -8.638 -4.051 -2.953 -4.109 3.459 -5.031 -5.872 -0.715 -4.218 -3.948 0.828 -4.541 0.394 -0.944 -4.829 -2.616 -2.904 ML 123 121 6 126 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 16 28 c g - - MP 128 127 6 132 6 2 2 26 45 -9.248 -9.187 -0.019 -7.964 -8.243 -8.638 -4.253 -4.281 -3.999 -0.539 -2.748 -4.442 2.824 -3.532 -4.033 -0.377 -4.349 -2.344 0.794 -4.331 2.259 -2.891 ML 129 127 6 132 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 6 132 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 17 27 a u - - MP 134 133 6 138 4 2 2 24 43 -7.290 -7.497 -0.042 -5.911 -0.777 -1.782 -0.841 1.688 -1.772 -2.634 1.400 -1.844 -1.854 1.031 -2.424 -0.433 1.425 -1.924 -0.019 -0.337 ML 135 133 6 138 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 137 133 6 138 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 138 138 5 138 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 139 139 6 139 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 18 - U - - - ML 140 139 6 142 3 1 1 21 40 -8.284 -0.016 -6.938 -2.094 -1.987 -2.852 1.755 D 141 139 6 142 3 0 0 20 39 -6.174 -1.687 -0.566 IL 142 142 3 142 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 19 - G - - - ML 143 142 3 145 3 1 1 20 39 -8.284 -0.016 -6.938 -0.363 -2.231 1.430 -1.665 D 144 142 3 145 3 0 0 19 38 -6.174 -1.687 -0.566 IL 145 145 3 145 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 20 - A - - - ML 146 145 3 148 3 1 1 19 37 -8.284 -0.016 -6.938 1.519 -2.027 -0.864 -1.563 D 147 145 3 148 3 0 0 18 37 -6.174 -1.687 -0.566 IL 148 148 3 148 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 21 - A - - - ML 149 148 3 151 3 1 1 18 36 -5.412 -0.046 -6.938 1.088 -0.358 -1.112 -0.662 D 150 148 3 151 3 0 0 17 35 -6.174 -1.687 -0.566 IL 151 151 3 151 3 1 1 20 38 -1.524 -0.740 -4.224 0.000 0.000 0.000 0.000 [ MATL 46 ] 23 - A - - - ML 152 151 3 154 3 1 1 16 35 -8.284 -0.016 -6.938 1.827 -3.020 -2.589 -2.629 D 153 151 3 154 3 0 0 16 34 -6.174 -1.687 -0.566 IL 154 154 3 154 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 24 - A - - - ML 155 154 3 157 3 1 1 15 33 -8.284 -0.016 -6.938 1.827 -3.020 -2.589 -2.629 D 156 154 3 157 3 0 0 15 33 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 25 - U - - - ML 158 157 3 160 3 1 1 13 31 -8.284 -0.016 -6.938 -0.737 -1.154 -1.194 1.330 D 159 157 3 160 3 0 0 13 32 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 26 - c - - - ML 161 160 3 163 2 1 1 1 1 * 0.000 -0.830 0.986 -1.765 0.217 D 162 160 3 163 2 0 0 0 0 * 0.000 IL 163 163 3 163 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 50 ] - - - - - - E 164 163 3 -1 0 0 0 0 0 [ BEGR 51 ] - - - - - - S 165 102 1 166 3 0 0 26 45 -8.284 -0.016 -6.938 IL 166 166 2 166 3 1 1 31 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 33 - G - - - ML 167 166 2 169 5 1 1 26 44 -5.020 -0.069 -7.192 -7.404 -8.296 -1.575 -3.088 1.753 -2.505 D 168 166 2 169 5 0 0 25 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 169 169 3 169 5 1 1 26 45 -2.526 -0.451 -4.205 -6.037 -5.310 0.000 0.000 0.000 0.000 [ MATP 53 ] 35 47 u a - - MP 170 169 3 174 6 2 2 25 43 -9.248 -9.187 -0.019 -7.964 -8.243 -8.638 -3.485 -3.121 -3.498 0.555 -2.891 -4.267 1.487 -3.395 -3.496 1.844 -3.968 -0.938 2.569 -3.685 -0.547 -2.388 ML 171 169 3 174 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 172 169 3 174 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 173 169 3 174 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 174 174 5 174 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 175 175 6 175 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 36 46 G C - - MP 176 175 6 180 6 2 2 23 41 -9.248 -9.187 -0.019 -7.964 -8.243 -8.638 -3.894 -2.907 -3.828 0.670 -3.732 -4.366 1.564 -4.000 -3.909 3.061 -4.273 -0.620 0.312 -3.808 -1.252 -2.745 ML 177 175 6 180 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 178 175 6 180 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 179 175 6 180 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 180 180 5 180 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 181 181 6 181 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 37 45 C G - - MP 182 181 6 186 6 2 2 21 39 -9.248 -9.187 -0.019 -7.964 -8.243 -8.638 -5.261 -5.226 -4.825 -1.409 -3.406 -5.142 3.722 -4.287 -4.907 -1.250 -5.082 -3.192 0.025 -5.280 -1.139 -3.726 ML 183 181 6 186 6 1 1 20 38 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 184 181 6 186 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 185 181 6 186 6 0 0 18 36 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 186 186 5 186 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 187 187 6 187 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 38 44 C G - - MP 188 187 6 192 4 2 2 19 37 -7.290 -1.771 -0.548 -5.911 -4.169 -4.118 -3.965 -0.286 -2.751 -4.470 3.107 -3.509 -3.972 -0.083 -4.323 -2.057 1.947 -4.269 -0.406 -2.808 ML 189 187 6 192 4 1 1 19 37 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 190 187 6 192 4 1 1 18 36 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 191 187 6 192 4 0 0 17 35 -4.568 -4.250 -2.265 -0.520 IL 192 192 5 192 4 1 1 20 38 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 193 193 6 193 3 1 1 18 36 -2.278 -0.392 -4.978 0.000 0.000 0.000 0.000 [ MATL 57 ] 39 - u - - - ML 194 193 6 196 3 1 1 16 35 -8.284 -0.016 -6.938 0.006 -0.981 0.211 0.413 D 195 193 6 196 3 0 0 16 34 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 40 - u - - - ML 197 196 3 199 3 1 1 15 33 -8.284 -0.016 -6.938 0.161 0.202 -0.942 0.276 D 198 196 3 199 3 0 0 15 33 -6.174 -1.687 -0.566 IL 199 199 3 199 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 41 - u - - - ML 200 199 3 202 3 1 1 13 31 -8.284 -0.016 -6.938 0.142 -0.444 -1.216 0.792 D 201 199 3 202 3 0 0 13 32 -6.174 -1.687 -0.566 IL 202 202 3 202 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 42 - a - - - ML 203 202 3 205 2 1 1 1 1 * 0.000 0.863 -0.776 -0.987 0.127 D 204 202 3 205 2 0 0 0 0 * 0.000 IL 205 205 3 205 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 61 ] - - - - - - E 206 205 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME lysM-Prevotella ACC RF03002 DESC lysM-Prevotella RNA LENG 66 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Oct 1 23:25:18 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 47 EFFN 3.714905 CKSUM 3641846241 STATS LOCAL MSV -7.8674 0.71896 STATS LOCAL VITERBI -8.7412 0.71896 STATS LOCAL FORWARD -3.1991 0.71896 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.07690 1.59964 1.47057 1.48023 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 0.00000 * 1 2.32706 0.62154 2.93340 1.16448 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 2 3.28298 0.14403 3.85100 2.58543 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 3 0.94275 2.77610 0.78426 2.38914 3 g - - : 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 4 0.74078 2.23647 2.34304 1.13822 4 a - - : 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 5 2.00369 2.27576 1.65279 0.56049 5 U - - : 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 6 0.41242 2.00577 2.55660 2.07280 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 7 3.25451 4.19679 0.08004 3.76032 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 8 0.08515 3.80185 3.47524 3.56334 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 9 0.54906 2.36472 2.43691 1.42254 9 A - - : 1.38629 1.38629 1.38629 1.38629 0.08098 2.76516 4.21166 0.41853 1.07299 1.09861 0.40547 10 0.15730 3.34899 2.72386 3.10536 11 A - - : 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 11 2.96565 3.80546 0.10234 3.75052 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 12 2.96128 3.79914 0.10298 3.74193 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 13 1.58130 2.98839 0.37673 2.85034 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 14 0.27144 3.49401 1.77779 3.26152 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 15 3.15881 0.75001 2.97255 0.83473 16 c - - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 16 1.18224 1.58826 1.64174 1.21913 17 a - - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 17 3.14963 3.02544 3.68359 0.12391 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 18 1.69929 3.13942 0.34137 2.76331 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 19 0.28682 2.99415 2.02366 2.70151 20 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 20 0.58067 1.62785 2.25490 1.97155 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05358 3.28741 4.21166 0.66445 0.72270 1.09861 0.40547 21 0.08515 3.80185 3.47524 3.56334 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 22 0.08515 3.80185 3.47524 3.56334 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 23 2.01824 2.32847 2.29482 0.40214 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 24 2.08454 0.63786 2.77414 1.25594 26 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 25 1.41971 1.80543 1.31649 1.12166 27 u - - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 26 2.25825 3.12912 0.22612 2.91713 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 27 3.45496 2.37423 3.27990 0.17710 29 U - - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 28 3.08070 0.42845 2.79965 1.41995 30 C - - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 29 3.88517 0.12576 3.63314 2.64231 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 30 3.87091 0.12653 3.62605 2.63963 32 C - - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 31 2.67378 3.81088 0.13248 3.41254 33 G - - - 1.38629 1.38629 1.38629 1.38629 0.06232 3.08788 4.21166 0.55805 0.84939 1.09861 0.40547 32 2.32082 1.75281 1.33460 0.76517 35 u - - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 33 2.24307 1.63448 0.51562 2.28588 36 G - - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 34 3.79718 0.13225 3.63628 2.58899 37 C - - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 35 2.93327 0.53873 2.70596 1.21576 38 C - - < 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 36 1.40456 2.14197 1.20302 1.08822 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 37 1.27923 1.21090 2.08508 1.20557 40 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 38 1.28762 1.71546 2.30658 0.81060 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 39 0.74989 1.97215 2.13474 1.30877 42 a - - _ 1.38629 1.38629 1.38629 1.38629 0.40165 1.15212 4.21166 0.09131 2.43876 1.09861 0.40547 40 1.34642 2.87307 0.48527 2.69161 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 41 2.87273 3.80381 0.11321 3.56829 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 42 2.54003 0.56544 1.54105 1.97422 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 43 0.84288 1.42990 1.58881 2.07124 47 a - - > 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 44 3.14963 3.02544 3.68359 0.12391 48 U - - : 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 45 2.37138 0.56328 2.98191 1.24962 49 C - - : 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 46 1.62574 0.92870 2.47960 1.12581 50 c - - : 1.38629 1.38629 1.38629 1.38629 0.23235 1.64762 4.21166 0.14745 1.98706 1.09861 0.40547 47 1.50706 2.29358 0.84650 1.39182 52 g - - : 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 48 0.08515 3.80185 3.47524 3.56334 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 49 3.25451 4.19679 0.08004 3.76032 54 G - - : 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 50 3.14963 3.02544 3.68359 0.12391 55 U - - : 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 51 1.12561 2.08637 1.70607 0.99471 56 u - - : 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 52 2.36311 1.56974 2.89908 0.44208 57 U - - : 1.38629 1.38629 1.38629 1.38629 0.22376 4.21166 1.68379 1.46634 0.26236 1.09861 0.40547 53 0.76913 1.70393 1.71740 1.74248 58 a - - : 1.38629 1.38629 1.38629 1.38629 0.03641 4.02431 4.02431 1.46634 0.26236 0.26776 1.44855 54 3.21650 4.15499 0.08339 3.72028 59 G - - : 1.38629 1.38629 1.38629 1.38629 0.03075 4.19050 4.19050 1.46634 0.26236 1.48444 0.25700 55 0.08882 3.76163 3.43824 3.51926 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.03075 4.19050 4.19050 1.46634 0.26236 0.60378 0.79129 56 0.08515 3.80185 3.47524 3.56334 61 A - - : 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 57 0.08515 3.80185 3.47524 3.56334 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 58 2.41793 1.70841 2.94825 0.38963 63 U - - : 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 59 0.20324 3.03159 2.96052 2.47833 64 A - - : 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 60 0.08515 3.80185 3.47524 3.56334 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 61 0.08515 3.80185 3.47524 3.56334 66 A - - : 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 62 0.08515 3.80185 3.47524 3.56334 67 A - - : 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 63 2.54189 1.99520 3.06394 0.30301 68 U - - : 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 64 0.13722 3.44409 2.88561 3.20725 69 A - - : 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 65 0.08515 3.80185 3.47524 3.56334 70 A - - : 1.38629 1.38629 1.38629 1.38629 0.03009 4.21166 4.21166 1.46634 0.26236 1.09861 0.40547 66 3.01620 0.20743 3.60720 2.19631 71 C - - : 1.38629 1.38629 1.38629 1.38629 0.01516 4.19672 * 1.46634 0.26236 0.00000 * //