INFERNAL1/a [1.1.5 | Sep 2023] NAME gut-2 ACC RF02990 DESC gut-2 RNA STATES 153 NODES 42 CLEN 48 W 60 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 22:52:26 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02990/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 73 EFFN 73.000000 CKSUM 62148561 NULL 0.000 0.000 0.000 0.000 GA 39.80 TC 43.70 NC 39.70 EFP7GF -15.7879 0.73010 ECMLC 0.67407 -7.63356 1.06454 1600000 422199 0.002842 ECMGC 0.41033 -25.50238 -10.20580 1600000 212811 0.001880 ECMLI 0.58403 -8.31804 1.32775 1600000 335540 0.003576 ECMGI 0.40368 -23.91654 -8.86557 1600000 174062 0.002298 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 60 78 -11.353 -11.560 -0.002 -9.974 IL 1 1 2 1 4 2 20 66 85 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 2 20 65 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 5 21 60 78 -12.267 -0.001 -10.921 0.820 -0.398 -0.462 -0.416 D 4 2 3 5 3 0 16 60 79 -6.174 -1.687 -0.566 IL 5 5 3 5 3 2 19 64 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 4 20 59 77 -12.267 -0.001 -10.921 1.224 -5.527 0.252 -1.145 D 7 5 3 8 3 0 16 59 78 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 19 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 4 19 58 76 -12.565 -0.001 -10.883 -7.837 1.994 -8.324 -6.827 D 10 8 3 11 3 0 16 57 75 -5.620 -0.734 -1.403 IL 11 11 3 11 3 1 18 59 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 50 - c - - MR 12 11 3 14 3 3 18 57 75 -12.565 -0.001 -10.883 -0.805 0.305 0.277 -0.029 D 13 11 3 14 3 0 14 55 74 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 17 58 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 49 - g - - MR 15 14 3 17 3 3 17 56 74 -12.565 -0.001 -10.883 0.333 -2.505 0.894 -0.502 D 16 14 3 17 3 0 14 54 73 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 17 57 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 48 - a - - MR 18 17 3 20 3 3 16 55 73 -12.565 -0.001 -10.883 0.835 -0.978 -0.685 0.119 D 19 17 3 20 3 0 13 53 72 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 16 56 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 47 - a - - MR 21 20 3 23 3 2 15 54 72 -12.565 -0.001 -10.883 0.441 0.015 -0.536 -0.085 D 22 20 3 23 3 0 13 52 71 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 15 55 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 46 - a - - MR 24 23 3 26 3 2 14 53 71 -12.565 -0.001 -10.883 0.569 -1.309 0.541 -0.603 D 25 23 3 26 3 0 12 52 70 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 14 54 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 45 - A - - MR 27 26 3 29 2 1 13 52 70 -12.911 -0.000 1.145 -7.065 0.826 -6.949 D 28 26 3 29 2 0 12 51 70 -4.432 -0.068 IR 29 29 3 29 2 1 13 53 72 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 10 ] - - - - - - B 30 29 3 31 99 0 12 51 69 [ BEGL 11 ] - - - - - - S 31 30 1 32 4 0 0 33 52 -0.004 -10.318 -9.726 -10.366 [ MATP 12 ] 4 27 C G - - MP 32 31 1 36 6 2 2 33 52 -12.229 -12.168 -0.002 -10.945 -11.224 -11.619 -9.136 -9.373 -1.929 -5.586 -6.842 -8.639 3.527 -7.750 -8.572 -5.549 -8.704 1.712 -1.304 -8.987 -1.140 -7.373 ML 33 31 1 36 6 1 1 32 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 34 31 1 36 6 1 1 32 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 35 31 1 36 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 36 36 5 36 6 1 1 33 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 37 37 6 37 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 5 26 g c - - MP 38 37 6 42 6 2 2 31 50 -12.229 -12.168 -0.002 -10.945 -11.224 -11.619 -6.287 -4.981 -6.118 1.738 -6.953 -6.729 0.663 -6.705 -6.513 2.909 -6.782 -0.412 1.059 -5.991 -0.782 -5.059 ML 39 37 6 42 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 40 37 6 42 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 41 37 6 42 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 42 42 5 42 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 43 43 6 43 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 6 25 u a - - MP 44 43 6 48 6 2 2 29 48 -3.743 -4.958 -0.244 -10.945 -4.382 -11.619 -6.553 -6.256 -6.555 -0.213 -5.439 -7.397 1.489 -6.088 -6.419 1.444 -6.932 -1.110 2.773 -6.736 1.121 -5.144 ML 45 43 6 48 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 46 43 6 48 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 47 43 6 48 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 48 48 5 48 6 1 1 29 47 -5.460 -0.179 -3.640 -7.378 -8.154 -7.814 0.000 0.000 0.000 0.000 IR 49 49 6 49 5 1 1 28 46 -5.113 -0.066 -8.624 -6.792 -7.897 0.000 0.000 0.000 0.000 [ MATP 15 ] 8 23 c g - - MP 50 49 6 54 6 2 2 27 45 -12.158 -12.098 -0.018 -10.874 -6.505 -11.549 -6.461 -6.162 -6.465 0.687 -5.365 -7.306 2.730 -6.010 -6.333 1.568 -6.846 -0.635 1.563 -6.643 0.065 -5.061 ML 51 49 6 54 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 52 49 6 54 6 1 1 26 44 -9.518 -8.247 -0.179 -8.226 -3.359 -6.439 -3.132 1.855 -3.928 -2.294 D 53 49 6 54 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 54 54 5 54 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 55 55 6 55 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 9 22 c g - - MP 56 55 6 60 6 2 2 25 43 -12.214 -12.153 -0.002 -10.930 -11.210 -11.605 -6.402 -5.546 -6.324 1.561 -5.895 -7.045 2.262 -6.302 -6.432 2.045 -6.841 1.163 0.525 -6.342 -1.714 -5.086 ML 57 55 6 60 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 58 55 6 60 6 1 1 24 42 -7.996 -6.725 -0.591 -6.703 -1.837 -4.917 1.386 -1.400 -1.125 -0.864 D 59 55 6 60 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 60 60 5 60 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 61 61 6 61 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 10 21 a u - - MP 62 61 6 66 6 2 2 23 41 -12.229 -12.168 -0.002 -10.945 -11.224 -11.619 -6.375 -5.537 -6.305 2.329 -5.912 -7.031 0.903 -6.307 -6.417 1.557 -6.829 1.336 1.679 -6.326 -1.786 -5.086 ML 63 61 6 66 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 64 61 6 66 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 65 61 6 66 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 66 66 5 66 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 11 20 c g - - MP 68 67 6 72 6 2 2 21 39 -12.229 -12.168 -0.002 -10.945 -11.224 -11.619 -6.551 -6.095 -6.536 1.417 -5.566 -7.357 2.474 -6.166 -6.452 1.600 -6.944 0.214 1.733 -6.683 -3.021 -5.164 ML 69 67 6 72 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 71 67 6 72 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 72 72 5 72 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 73 73 6 73 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 12 19 c g - - MP 74 73 6 78 4 2 2 19 37 -11.353 -11.560 -0.002 -9.974 -6.536 -6.250 -6.540 0.631 -5.443 -7.378 2.494 -6.090 -6.411 1.574 -6.923 -3.846 1.350 -6.721 -0.922 1.370 ML 75 73 6 78 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 76 73 6 78 4 1 1 22 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 77 73 6 78 4 0 0 21 39 -4.568 -4.250 -2.265 -0.520 IL 78 78 5 78 4 1 1 24 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 79 79 6 79 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 13 - A - - - ML 80 79 6 82 3 1 1 16 34 -12.267 -0.001 -10.921 1.787 -6.902 -0.909 -6.795 D 81 79 6 82 3 0 0 18 36 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 14 - A - - - ML 83 82 3 85 3 1 1 14 33 -12.267 -0.001 -10.921 1.864 -2.603 -5.643 -2.509 D 84 82 3 85 3 0 0 17 35 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 15 - U - - - ML 86 85 3 88 3 1 1 13 32 -12.267 -0.001 -10.921 -0.355 -4.423 -0.873 1.392 D 87 85 3 88 3 0 0 16 34 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 16 - U - - - ML 89 88 3 91 3 1 1 12 30 -12.267 -0.001 -10.921 -3.298 -0.385 -2.162 1.540 D 90 88 3 91 3 0 0 15 33 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 17 - G - - - ML 92 91 3 94 3 1 1 10 28 -12.267 -0.001 -10.921 -6.873 -8.643 1.994 -7.635 D 93 91 3 94 3 0 0 13 32 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 18 - G - - - ML 95 94 3 97 2 1 1 1 1 * 0.000 -6.873 -8.643 1.994 -7.635 D 96 94 3 97 2 0 0 0 0 * 0.000 IL 97 97 3 97 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 26 ] - - - - - - E 98 97 3 -1 0 0 0 0 0 [ BEGR 27 ] - - - - - - S 99 30 1 100 3 0 1 28 46 -12.267 -0.001 -10.921 IL 100 100 2 100 3 1 1 34 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - A - - - ML 101 100 2 103 3 1 2 28 46 -12.267 -0.001 -10.921 1.947 -7.521 -2.921 -7.208 D 102 100 2 103 3 0 0 29 47 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 33 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - A - - - ML 104 103 3 106 3 1 2 27 45 -12.267 -0.001 -10.921 1.968 -7.769 -3.675 -7.378 D 105 103 3 106 3 0 0 27 46 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 32 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - G - - - ML 107 106 3 109 5 1 1 26 44 -11.211 -0.027 -11.026 -5.820 -12.130 -3.564 -8.514 1.966 -7.547 D 108 106 3 109 5 0 0 24 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 109 109 3 109 5 1 1 26 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 31 44 G C - - MP 110 109 3 114 6 2 2 25 43 -12.205 -12.144 -0.002 -10.921 -11.201 -11.596 -8.812 -6.717 -9.225 1.786 -10.762 -8.594 -5.728 -9.307 -7.983 3.592 -8.375 -1.250 -5.898 -8.661 -7.838 -7.900 ML 111 109 3 114 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 112 109 3 114 6 1 1 24 42 -8.384 -7.113 -0.428 -7.091 -2.225 -5.305 -1.028 -2.151 1.556 -1.536 D 113 109 3 114 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 114 114 5 114 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 115 115 6 115 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 32 43 g c - - MP 116 115 6 120 6 2 2 23 41 -12.229 -12.168 -0.002 -10.945 -11.224 -11.619 -6.602 -2.037 -6.451 2.614 -7.635 -7.131 -0.451 -7.084 -6.801 2.754 -7.094 0.923 -2.968 -6.370 -4.716 -5.387 ML 117 115 6 120 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 6 120 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 6 120 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 33 42 C G - - MP 122 121 6 126 6 2 2 21 39 -12.229 -12.168 -0.002 -10.945 -11.224 -11.619 -11.784 -12.030 -8.310 -9.140 -6.553 -7.832 3.996 -11.160 -11.966 -8.933 -7.859 -10.986 -6.979 -12.059 -7.978 -10.724 ML 123 121 6 126 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 34 41 C G - - MP 128 127 6 132 4 2 2 19 37 -11.353 -11.560 -0.039 -5.259 -9.169 -9.441 -8.493 -5.668 -6.847 -8.642 3.273 -7.761 -8.595 -5.634 -8.718 -7.822 2.536 -9.007 -1.143 -7.396 ML 129 127 6 132 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 4 1 1 22 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 131 127 6 132 4 0 0 21 39 -4.568 -4.250 -2.265 -0.520 IL 132 132 5 132 4 1 1 24 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 133 133 6 133 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - A - - - ML 134 133 6 136 3 1 1 16 34 -12.231 -0.076 -4.285 1.351 -7.024 0.518 -6.929 D 135 133 6 136 3 0 0 16 34 -8.652 -0.191 -3.043 IL 136 136 3 136 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - A - - - ML 137 136 3 139 3 1 1 14 33 -12.194 -0.001 -10.848 1.856 -2.528 -5.555 -2.435 D 138 136 3 139 3 0 0 15 33 -9.501 -0.103 -3.893 IL 139 139 3 139 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - U - - - ML 140 139 3 142 3 1 1 13 32 -12.267 -0.001 -10.921 -0.092 -4.201 -0.677 1.252 D 141 139 3 142 3 0 0 16 34 -6.174 -1.687 -0.566 IL 142 142 3 142 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - u - - - ML 143 142 3 145 3 1 1 12 30 -12.267 -0.001 -10.921 -0.100 0.370 -4.971 0.801 D 144 142 3 145 3 0 0 15 33 -6.174 -1.687 -0.566 IL 145 145 3 145 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - G - - - ML 146 145 3 148 3 1 1 10 28 -12.267 -0.001 -10.921 -6.873 -8.643 1.994 -7.635 D 147 145 3 148 3 0 0 13 32 -6.174 -1.687 -0.566 IL 148 148 3 148 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - G - - - ML 149 148 3 151 2 1 1 1 1 * 0.000 -6.873 -8.643 1.994 -7.635 D 150 148 3 151 2 0 0 0 0 * 0.000 IL 151 151 3 151 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 41 ] - - - - - - E 152 151 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME gut-2 ACC RF02990 DESC gut-2 RNA LENG 48 MAXL 102 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 22:52:26 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02990/CM NSEQ 73 EFFN 62.141785 CKSUM 62148561 STATS LOCAL MSV -7.9051 0.73010 STATS LOCAL VITERBI -8.2784 0.73010 STATS LOCAL FORWARD -3.6937 0.73010 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.32710 1.59163 1.07095 1.66877 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 0.00000 * 1 0.82303 1.66257 1.70617 1.66237 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 2 0.53973 4.99341 1.21472 2.17576 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 3 6.62923 0.00490 6.95951 5.94676 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 4 3.99144 0.32860 1.58050 2.88733 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 5 1.55058 2.28937 0.65840 1.77866 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 6 2.84413 1.70660 1.60849 0.57956 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.14268 2.51476 2.95479 0.03256 3.44080 1.09861 0.40547 7 2.26056 0.87849 1.48615 1.37021 8 c - - < 1.38629 1.38629 1.38629 1.38629 0.01423 6.57064 4.36409 1.46634 0.26236 0.04980 3.02460 8 1.67533 1.20315 0.92136 2.16692 9 g - - < 1.38629 1.38629 1.38629 1.38629 0.00269 6.61193 6.61193 1.46634 0.26236 0.19898 1.71238 9 1.15883 2.10687 1.06863 1.50937 10 g - - < 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 10 1.77789 1.05292 1.33783 1.51562 11 c - - < 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 11 2.29926 1.03782 1.65108 1.03959 12 c - - < 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 12 0.14923 5.98454 2.01436 5.91098 13 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 13 0.09656 3.17707 5.14534 3.11196 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 14 1.62994 4.26619 1.99157 0.42535 15 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 15 3.62132 1.65641 2.88233 0.31962 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 16 6.00345 7.22830 0.00466 6.53104 17 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 17 6.00345 7.22830 0.00466 6.53104 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 18 1.80467 1.67451 0.95192 1.33913 19 g - - > 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 19 1.55345 1.65301 1.03288 1.42283 20 g - - > 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 20 1.59587 1.66209 1.96892 0.75946 21 u - - > 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 21 2.27387 1.34986 1.15233 1.13349 22 u - - > 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 22 1.70624 1.50914 0.78351 1.96219 23 g - - > 1.38629 1.38629 1.38629 1.38629 0.12368 2.16278 6.62274 0.02297 3.78514 1.09861 0.40547 23 0.85243 1.76215 1.15803 2.43223 25 a - - > 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 24 2.02584 0.74933 1.98624 1.35393 26 c - - > 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 25 3.58994 6.05851 0.26951 1.57837 27 G - - > 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 26 0.03726 6.40743 3.41434 6.20278 28 A - - - 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 27 0.02296 6.58520 3.93561 6.32876 29 A - - - 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 28 3.85275 7.11821 0.02388 6.45703 30 G - - - 1.38629 1.38629 1.38629 1.38629 0.02020 6.62274 3.98111 1.46634 0.26236 1.09861 0.40547 29 1.53579 6.23714 0.24791 6.06087 31 G - - < 1.38629 1.38629 1.38629 1.38629 0.00271 6.60525 6.60525 1.46634 0.26236 0.13321 2.08169 30 0.92923 3.02814 0.61370 4.17409 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 31 7.11572 0.00298 7.15285 6.58810 33 C - - < 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 32 6.05082 0.50376 5.99146 0.93934 34 C - - < 1.38629 1.38629 1.38629 1.38629 0.02797 6.62274 3.63994 1.46634 0.26236 1.09861 0.40547 33 0.44959 6.08145 1.02896 6.01366 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05475 6.59750 2.95823 1.46634 0.26236 0.09649 2.38614 34 0.10196 3.12583 5.08526 3.06079 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00280 6.57219 6.57219 1.46634 0.26236 0.05121 2.99732 35 1.44772 4.11238 1.85488 0.52416 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 36 1.45703 1.13006 4.63106 0.83399 38 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 37 6.00345 7.22830 0.00466 6.53104 39 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 38 6.00345 7.22830 0.00466 6.53104 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 39 1.01424 6.03229 0.45934 5.73870 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 40 6.02757 6.80950 0.00467 6.77206 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 41 4.35314 0.82449 2.95967 0.69949 43 u - - > 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 42 5.45549 0.29779 4.23017 1.43245 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 43 0.59159 6.10833 0.81665 6.02421 45 A - - : 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 44 0.99530 2.27976 1.01825 1.79063 46 a - - : 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 45 1.08271 1.38011 1.75667 1.43905 47 a - - : 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 46 0.81297 2.05485 1.85751 1.30090 48 a - - : 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 47 1.15824 3.08057 0.77142 1.72781 49 g - - : 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 48 1.92521 1.18071 1.20115 1.40143 50 c - - : 1.38629 1.38629 1.38629 1.38629 0.00133 6.62141 * 1.46634 0.26236 0.00000 * //