INFERNAL1/a [1.1.5 | Sep 2023] NAME freshwater-1 ACC RF02979 DESC freshwater-1 RNA STATES 195 NODES 53 CLEN 62 W 82 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 13:27:33 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02979/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 8 EFFN 2.691406 CKSUM 2097918661 NULL 0.000 0.000 0.000 0.000 GA 72.00 TC 72.40 NC 39.90 EFP7GF -9.6285 0.71913 ECMLC 0.65834 -6.98411 2.10710 1600000 476941 0.002516 ECMGC 0.42578 -15.85669 -3.20566 1600000 87378 0.004578 ECMLI 0.65827 -4.94333 3.48292 1600000 307681 0.003900 ECMGI 0.43966 -12.29186 -0.43304 1600000 73522 0.005441 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 82 104 -7.231 -7.438 -0.044 -5.852 IL 1 1 2 1 4 1 25 85 108 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 24 84 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 2 24 82 104 -8.228 -0.017 -6.883 -1.987 -1.897 -2.741 1.735 D 4 2 3 5 3 0 20 80 102 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 24 83 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 23 81 103 -8.228 -0.017 -6.883 -2.134 -3.431 1.823 -2.818 D 7 5 3 8 3 0 19 79 101 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 23 82 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 22 80 102 -8.228 -0.017 -6.883 -1.987 -1.897 -2.741 1.735 D 10 8 3 11 3 0 18 78 100 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 22 81 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - g - - - ML 12 11 3 14 3 1 21 79 101 -8.228 -0.017 -6.883 0.199 -1.224 0.686 -0.295 D 13 11 3 14 3 0 18 77 99 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 21 80 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 21 78 100 -8.228 -0.017 -6.883 1.039 -0.753 -0.494 -0.639 D 16 14 3 17 3 0 17 76 98 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 20 79 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - u - - - ML 18 17 3 20 3 1 20 77 99 -8.228 -0.017 -6.883 -0.114 -0.518 -0.580 0.773 D 19 17 3 20 3 0 16 75 97 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 20 78 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 19 76 98 -8.228 -0.017 -6.883 -0.395 -2.196 1.431 -1.625 D 22 20 3 23 3 0 16 74 96 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 19 77 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 24 23 3 26 3 1 18 75 97 -8.228 -0.140 -3.485 -2.134 -3.431 1.823 -2.818 D 25 23 3 26 3 0 15 73 96 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 18 76 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 17 74 96 -8.107 -0.019 -6.761 1.774 -2.661 -2.264 -2.232 D 28 26 3 29 3 0 15 72 95 -7.098 -0.651 -1.490 IL 29 29 3 29 3 1 17 75 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - C - - - ML 30 29 3 32 3 1 16 73 95 -8.603 -0.016 -6.921 -1.449 1.401 -2.302 -0.338 D 31 29 3 32 3 0 13 71 94 -5.620 -0.734 -1.403 IL 32 32 3 32 3 1 16 73 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 67 - A - - MR 33 32 3 35 3 1 15 72 94 -8.603 -0.016 -6.921 1.812 -2.907 -2.487 -2.505 D 34 32 3 35 3 0 12 70 92 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 15 72 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 66 - A - - MR 36 35 3 38 3 1 14 71 93 -8.603 -0.016 -6.921 1.364 -0.818 -1.487 -0.992 D 37 35 3 38 3 0 11 69 91 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 14 71 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 65 - A - - MR 39 38 3 41 3 1 13 70 92 -8.603 -0.016 -6.921 1.812 -2.907 -2.487 -2.505 D 40 38 3 41 3 0 11 68 90 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 13 70 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 64 - a - - MR 42 41 3 44 3 1 12 69 91 -8.603 -0.016 -6.921 0.859 0.118 -1.282 -0.535 D 43 41 3 44 3 0 10 67 89 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 12 69 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 63 - U - - MR 45 44 3 47 3 1 11 68 90 -8.603 -0.016 -6.921 -0.897 -1.161 -0.969 1.325 D 46 44 3 47 3 0 10 66 89 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 12 68 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 62 - A - - MR 48 47 3 50 2 1 10 67 89 -8.669 -0.004 1.118 -1.659 0.070 -1.109 D 49 47 3 50 2 0 9 66 88 -4.432 -0.068 IR 50 50 3 50 2 1 11 68 90 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 17 ] - - - - - - B 51 50 3 52 132 0 9 66 88 [ BEGL 18 ] - - - - - - S 52 51 1 53 4 0 0 45 68 -0.040 -6.983 -6.390 -7.030 [ MATP 19 ] 11 41 C G - - MP 53 52 1 57 6 2 2 45 68 -9.222 -9.161 -0.019 -7.938 -8.218 -8.613 -5.135 -5.090 -4.722 -1.279 -3.324 -5.056 3.698 -4.193 -4.797 -1.108 -4.989 -3.051 0.123 -5.163 -1.051 -3.619 ML 54 52 1 57 6 1 1 44 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 1 57 6 1 1 44 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 1 57 6 0 0 41 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 45 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 45 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 12 40 C G - - MP 59 58 6 63 6 2 2 43 66 -9.222 -9.161 -0.019 -7.938 -8.218 -8.613 -5.135 -5.090 -4.722 -1.279 -3.324 -5.056 3.698 -4.193 -4.797 -1.108 -4.989 -3.051 0.123 -5.163 -1.051 -3.619 ML 60 58 6 63 6 1 1 42 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 42 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 40 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 43 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 43 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 13 39 U A - - MP 65 64 6 69 6 2 2 41 64 -9.222 -9.161 -0.019 -7.938 -8.218 -8.613 -4.850 -4.686 -4.612 -0.940 -3.424 -5.114 0.913 -4.162 -4.612 -0.768 -4.952 -2.564 3.570 -4.971 -1.085 -3.358 ML 66 64 6 69 6 1 1 40 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 40 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 38 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 41 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 41 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 14 38 G C - - MP 71 70 6 75 4 2 2 39 62 -7.231 -7.438 -0.044 -5.852 -5.259 -3.345 -5.426 -0.156 -5.957 -4.889 -1.192 -5.692 -4.649 3.741 -4.952 -1.069 -1.565 -4.802 -3.260 -4.295 ML 72 70 6 75 4 1 1 39 62 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 4 1 1 39 61 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 74 70 6 75 4 0 0 38 60 -4.568 -4.250 -2.265 -0.520 IL 75 75 5 75 4 1 1 41 63 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 76 76 6 76 3 1 1 40 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 15 - C - - - ML 77 76 6 79 3 1 1 37 59 -8.228 -0.017 -6.883 -1.018 1.251 -0.988 -0.684 D 78 76 6 79 3 0 0 36 58 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 39 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 16 - U - - - ML 80 79 3 82 3 1 1 36 58 -8.228 -0.017 -6.883 -1.987 -1.897 -2.741 1.735 D 81 79 3 82 3 0 0 35 57 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 38 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 17 - C - - - ML 83 82 3 85 3 1 1 35 57 -8.603 -0.016 -6.921 -2.390 1.761 -3.220 -1.676 D 84 82 3 85 3 0 0 34 56 -5.620 -0.734 -1.403 IL 85 85 3 85 3 1 1 36 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 37 - A - - MR 86 85 3 88 5 1 1 34 56 -7.327 -0.033 -7.142 -7.354 -8.246 1.812 -2.907 -2.487 -2.505 D 87 85 3 88 5 0 0 33 55 -5.352 -0.707 -2.978 -4.409 -2.404 IR 88 88 3 88 5 1 1 35 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 18 36 U A - - MP 89 88 3 93 6 2 2 33 55 -9.222 -9.161 -0.152 -7.938 -8.218 -3.489 -4.850 -4.686 -4.612 -0.940 -3.424 -5.114 0.913 -4.162 -4.612 -0.768 -4.952 -2.564 3.570 -4.971 -1.085 -3.358 ML 90 88 3 93 6 1 1 32 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 91 88 3 93 6 1 1 32 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 3 93 6 0 0 29 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 93 93 5 93 6 1 1 33 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 1 33 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 19 35 G C - - MP 95 94 6 99 6 2 2 31 54 -3.657 -9.031 -0.139 -7.807 -8.087 -8.482 -4.669 -3.059 -4.761 0.249 -5.129 -4.665 -0.512 -4.998 -4.280 3.620 -4.622 -0.755 -0.900 -4.420 -2.545 -3.639 ML 96 94 6 99 6 1 1 29 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 97 94 6 99 6 1 1 29 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 98 94 6 99 6 0 0 29 51 -10.419 -9.118 -0.629 -5.597 -5.614 -1.690 IL 99 99 5 99 6 1 1 31 53 -3.388 -0.975 -1.569 -5.306 -6.082 -5.743 0.000 0.000 0.000 0.000 IR 100 100 6 100 5 1 1 30 52 -2.951 -0.618 -6.462 -2.403 -5.735 0.000 0.000 0.000 0.000 [ MATP 29 ] 21 33 c g - - MP 101 100 6 105 6 2 2 29 51 -9.173 -9.112 -0.020 -7.888 -8.168 -8.563 -3.094 -2.647 -3.149 1.916 -2.882 -3.960 1.976 -3.247 -3.200 1.879 -3.686 -0.494 1.012 -3.275 -0.573 -2.107 ML 102 100 6 105 6 1 1 27 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 103 100 6 105 6 1 1 28 50 -7.493 -6.222 -0.932 -6.200 -1.334 -4.414 -0.183 -0.495 -0.803 0.877 D 104 100 6 105 6 0 0 25 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 105 105 5 105 6 1 1 29 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 106 106 6 106 5 1 1 28 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 22 32 u a - - MP 107 106 6 111 6 2 2 27 49 -9.222 -9.161 -0.075 -7.938 -8.218 -4.654 -3.105 -3.072 -3.161 1.002 -2.506 -3.917 1.733 -3.076 -3.170 0.713 -3.665 -1.154 2.183 -3.344 1.495 -2.131 ML 108 106 6 111 6 1 1 25 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 109 106 6 111 6 1 1 25 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 110 106 6 111 6 0 0 23 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 111 111 5 111 6 1 1 27 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 112 112 6 112 5 1 1 26 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 23 31 G C - - MP 113 112 6 117 4 2 2 25 47 -2.131 -7.307 -0.422 -5.721 -5.022 -3.229 -5.153 0.010 -5.626 -4.801 -0.921 -5.411 -4.506 3.699 -4.824 -0.940 -1.299 -4.650 -2.974 -4.025 ML 114 112 6 117 4 1 1 23 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 115 112 6 117 4 1 1 23 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 116 112 6 117 4 0 0 21 43 -5.279 -4.961 -0.954 -1.231 IL 117 117 5 117 4 1 1 25 47 -2.738 -0.710 -2.170 -5.907 0.000 0.000 0.000 0.000 IR 118 118 6 118 3 1 1 24 46 -1.198 -0.898 -5.183 0.000 0.000 0.000 0.000 [ MATL 32 ] 25 - U - - - ML 119 118 6 121 3 1 1 16 35 -8.228 -0.017 -6.883 -0.894 -1.159 -0.962 1.322 D 120 118 6 121 3 0 0 16 34 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 26 - G - - - ML 122 121 3 124 3 1 1 15 33 -8.228 -0.017 -6.883 -2.134 -3.431 1.823 -2.818 D 123 121 3 124 3 0 0 15 33 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 27 - C - - - ML 125 124 3 127 3 1 1 13 31 -8.228 -0.017 -6.883 -2.390 1.761 -3.220 -1.676 D 126 124 3 127 3 0 0 13 32 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 28 - A - - - ML 128 127 3 130 2 1 1 1 1 * 0.000 1.416 -0.960 -1.539 -1.081 D 129 127 3 130 2 0 0 0 0 * 0.000 IL 130 130 3 130 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 36 ] - - - - - - E 131 130 3 -1 0 0 0 0 0 [ BEGR 37 ] - - - - - - S 132 51 1 133 5 0 0 34 53 -7.327 -0.033 -7.142 -7.354 -8.246 IL 133 133 2 133 5 1 1 35 54 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 42 61 u a - - MP 134 133 2 138 6 2 2 34 53 -9.222 -9.161 -0.019 -7.938 -8.218 -8.613 -2.465 -2.505 -2.605 1.209 -2.270 -3.433 1.695 -2.730 -2.636 1.015 -3.179 -0.768 2.152 -2.751 0.331 -0.416 ML 135 133 2 138 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 2 138 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 2 138 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 34 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 43 60 G C - - MP 140 139 6 144 6 2 2 32 51 -9.222 -9.161 -0.019 -7.938 -8.218 -8.613 -5.259 -3.345 -5.426 -0.156 -5.957 -4.889 -1.192 -5.692 -4.649 3.741 -4.952 -1.069 -1.565 -4.802 -3.260 -4.295 ML 141 139 6 144 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 44 59 g c - - MP 146 145 6 150 6 2 2 30 49 -9.222 -9.161 -0.019 -7.938 -8.218 -8.613 -3.715 -2.619 -3.737 2.413 -4.335 -4.658 0.127 -4.038 -3.734 2.747 -4.196 -0.198 -0.164 -3.903 -1.829 -2.617 ML 147 145 6 150 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 45 58 u a - - MP 152 151 6 156 6 2 2 28 47 -9.222 -9.161 -0.019 -7.938 -8.218 -8.613 -3.038 -2.661 -3.114 1.761 -2.849 -3.951 1.398 -3.217 -3.153 1.812 -3.658 -0.539 1.950 -3.250 -0.571 -2.085 ML 153 151 6 156 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 46 57 g c - - MP 158 157 6 162 6 2 2 26 45 -9.222 -9.161 -0.019 -7.938 -8.218 -8.613 -3.695 -2.930 -3.648 0.690 -3.329 -4.276 1.981 -3.712 -3.722 2.770 -4.121 -0.674 0.643 -3.703 -0.906 -2.556 ML 159 157 6 162 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 47 56 g c - - MP 164 163 6 168 4 2 2 24 43 -7.231 -7.438 -0.044 -5.852 -3.005 -2.329 -3.042 1.770 -3.357 -3.766 0.696 -3.464 -3.214 2.699 -3.651 -0.193 0.443 -0.609 -1.113 -2.115 ML 165 163 6 168 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 167 163 6 168 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 168 168 5 168 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 169 169 6 169 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 48 - G - - - ML 170 169 6 172 3 1 1 21 40 -8.228 -0.017 -6.883 -2.134 -3.431 1.823 -2.818 D 171 169 6 172 3 0 0 20 39 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 49 - g - - - ML 173 172 3 175 3 1 1 20 38 -8.228 -0.017 -6.883 -0.576 -1.241 0.787 0.240 D 174 172 3 175 3 0 0 19 38 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 50 - A - - - ML 176 175 3 178 3 1 1 19 37 -8.228 -0.017 -6.883 1.812 -2.907 -2.487 -2.505 D 177 175 3 178 3 0 0 18 37 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 51 - A - - - ML 179 178 3 181 3 1 1 17 36 -8.228 -0.017 -6.883 1.812 -2.907 -2.487 -2.505 D 180 178 3 181 3 0 0 17 36 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 52 - c - - - ML 182 181 3 184 3 1 1 16 35 -8.228 -0.017 -6.883 0.380 0.664 -1.389 -0.449 D 183 181 3 184 3 0 0 16 34 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 53 - c - - - ML 185 184 3 187 3 1 1 15 33 -8.228 -0.017 -6.883 0.472 0.574 -1.354 -0.449 D 186 184 3 187 3 0 0 15 33 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 54 - a - - - ML 188 187 3 190 3 1 1 13 31 -8.228 -0.017 -6.883 0.862 -1.050 -1.200 0.339 D 189 187 3 190 3 0 0 13 32 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 55 - A - - - ML 191 190 3 193 2 1 1 1 1 * 0.000 1.812 -2.907 -2.487 -2.505 D 192 190 3 193 2 0 0 0 0 * 0.000 IL 193 193 3 193 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 52 ] - - - - - - E 194 193 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME freshwater-1 ACC RF02979 DESC freshwater-1 RNA LENG 62 MAXL 140 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 9 13:27:33 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02979/CM NSEQ 8 EFFN 4.097656 CKSUM 2097918661 STATS LOCAL MSV -7.9473 0.71913 STATS LOCAL VITERBI -8.7437 0.71913 STATS LOCAL FORWARD -3.7259 0.71913 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.27808 1.43495 1.31360 1.53967 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 0.00000 * 1 3.27240 3.12959 3.80902 0.10962 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 2 3.37189 4.32551 0.07058 3.88253 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 3 3.27240 3.12959 3.80902 0.10961 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 4 1.27524 2.40326 0.81668 1.66963 4 g - - : 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 5 0.59155 1.95129 1.76383 2.01699 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 6 1.50233 1.79052 1.79394 0.81145 6 u - - : 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 7 1.76788 3.25068 0.30859 2.88107 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 8 3.37189 4.32551 0.07058 3.88253 8 G - - : 1.38629 1.38629 1.38629 1.38629 0.13054 4.24972 2.22460 1.46634 0.26236 1.09861 0.40547 9 0.09091 3.73944 3.41786 3.49490 9 A - - : 1.38629 1.38629 1.38629 1.38629 0.03200 4.15118 4.15118 1.46634 0.26236 0.23425 1.56622 10 2.77603 0.31276 3.39470 1.75597 10 C - - : 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 11 3.95909 0.11409 3.80245 2.71166 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 12 3.94592 0.11475 3.79513 2.70914 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 13 3.84802 2.59740 3.68357 0.12888 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 14 3.04249 3.91101 0.09314 3.85399 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 15 2.48350 0.37055 2.18232 2.17673 15 C - - - 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 16 3.27240 3.12959 3.80902 0.10962 16 U - - - 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 17 3.66065 0.09135 4.20283 3.06546 17 C - - - 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 18 3.85546 2.59823 3.68762 0.12852 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.28614 4.24972 1.45000 1.46634 0.26236 1.09861 0.40547 19 2.71939 3.44719 0.14107 3.38662 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.17201 1.96807 4.00087 0.24406 1.52990 0.11480 2.22138 20 1.24808 1.29886 1.30632 1.77617 21 a - - < 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 21 1.95175 1.61658 2.17709 0.60509 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.13149 4.24972 2.21692 1.46634 0.26236 1.09861 0.40547 22 2.89596 3.70703 0.11216 3.63796 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.32139 1.35054 4.15026 0.11751 2.19945 0.23265 1.57230 23 2.29593 2.44642 2.14488 0.36291 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 24 3.37189 4.32551 0.07058 3.88253 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 25 3.66065 0.09135 4.20283 3.06546 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 26 0.31676 2.11831 2.74349 2.44284 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.42086 1.45000 2.21692 0.73586 0.65218 1.09861 0.40547 27 3.77412 0.13572 3.54340 2.58972 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.03203 4.15026 4.15026 1.46634 0.26236 0.23265 1.57230 28 1.09082 2.34770 0.90574 1.80649 32 g - - > 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 29 2.01104 1.43744 1.20432 1.11255 33 u - - > 1.38629 1.38629 1.38629 1.38629 0.56036 1.63772 1.45000 0.14082 2.02988 1.09861 0.40547 30 3.59288 0.16737 3.29078 2.41497 35 C - - > 1.38629 1.38629 1.38629 1.38629 0.03729 4.00087 4.00087 1.46634 0.26236 0.11480 2.22138 31 0.14534 3.89611 2.43444 3.60057 36 A - - > 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 32 0.07469 3.92754 3.59139 3.70046 37 A - - - 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 33 4.00385 0.11310 3.75945 2.72727 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 34 0.14726 3.87068 2.42987 3.57411 39 A - - > 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 35 2.98230 3.94126 0.09975 3.69538 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 36 2.97745 3.93327 0.10044 3.68660 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 37 1.73431 1.55210 1.85067 0.78846 42 u - - < 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 38 3.05162 3.92461 0.09194 3.87245 43 G - - < 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 39 0.91451 2.90461 0.73293 2.74858 44 g - - < 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 40 1.36130 1.83174 1.34422 1.13074 45 u - - < 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 41 2.29997 1.29961 0.67568 2.13463 46 G - - < 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 42 1.35605 2.39071 0.69942 1.87155 47 g - - < 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 43 3.37189 4.32551 0.07058 3.88253 48 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 44 1.98862 2.46671 0.72579 1.22313 49 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 45 0.07469 3.92754 3.59139 3.70046 50 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 46 0.07469 3.92754 3.59139 3.70046 51 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 47 1.10473 0.81645 2.59198 1.88501 52 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 48 1.02686 0.88565 2.55830 1.88396 53 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 49 0.72174 2.28258 2.38873 1.13841 54 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 50 0.07469 3.92754 3.59139 3.70046 55 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 51 2.48755 0.68350 2.19783 1.20065 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 52 2.38563 0.72909 1.22047 2.03614 57 c - - > 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 53 1.24206 1.47044 1.65937 1.23399 58 u - - > 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 54 2.98845 0.81899 2.71109 0.81578 59 u - - > 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 55 4.05003 0.11098 3.78245 2.73563 60 C - - > 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 56 1.07851 2.02074 1.25745 1.41484 61 a - - > 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 57 0.53538 2.85015 1.29368 2.49548 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 58 2.29877 2.44789 2.15077 0.36133 63 U - - : 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 59 0.71562 1.24211 2.49829 1.96532 64 a - - : 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 60 0.07469 3.92754 3.59139 3.70046 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 61 0.35146 1.99958 2.69748 2.36905 66 A - - : 1.38629 1.38629 1.38629 1.38629 0.02895 4.24972 4.24972 1.46634 0.26236 1.09861 0.40547 62 0.07469 3.92754 3.59139 3.70046 67 A - - : 1.38629 1.38629 1.38629 1.38629 0.01458 4.23535 * 1.46634 0.26236 0.00000 * //