# STOCKHOLM 1.0
#=GF ID Enterococcus-1
#=GF AC RF02973
#=GF DE Enterococcus-1 RNA
#=GF AU Weinberg Z; 0000-0002-6681-3624
#=GF GA 71.4
#=GF NC 70.9
#=GF TC 72.7
#=GF SE Weinberg Z
#=GF SS Published; PMID:28977401;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 25.16 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 28977401
#=GF RT Detection of 224 candidate structured RNAs by comparative analysis of
#=GF RT specific subsets of intergenic regions.
#=GF RA Weinberg Z, Lunse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR,
#=GF RA Sherlock ME, Breaker RR
#=GF RL Nucleic Acids Res. 2017;45:10811-10823.
#=GF CC Enterococcus (Firmicutes). Big IGRs
#=GF WK Enterococcus-1_RNA_motif
#=GF SQ 78

URS0000D6A625_1158614/1-144 CUUUG---GU--CUUUUUGUGG-CUC-CCACAAAAAUGGCAAGUUGUCCAAGUGCCGACUUUGCG----GACGUAGGAAGCAAACAAAGGACAAUUCGACUGCCGAAGGAACGUAGGCACAAA--GAAUUG-AAUGGACUAGUUGCC-ACCAACCAAAG
URS0000D6C07E_1138883/1-139 GUUUG---GU---UUUUUAUG-CUCUG-CAUAAAAAUGGGGCAUUGUCCAUGUGCCGACUUUGCA----GAGGAACGGCGCAAACAAAGGCAAAUUCGACUGACGGAGGAACGGAGUCACCAA--GAAUUU-AAUGGACAAUGA----ACCAA-CAAAC
URS0000D69866_1138883/1-141 CGUUU---GG--CUUUUUGUG-CAUGG-CACAAAAAUGGGGCAGUGUCCAUGUGCCGGCUUUGCA----GAGGAACGGCGCAAACAAAGGCAAAUUCGACUGACGGAGGAACGGAGUCACCAA--GAAUUU-AAUGGACAAUGAACCAAC----AAACG
URS0000D66273_1138883/1-141 CGUUU---GU--UUUUUUGUG-CUUUG-CGCAAAAAUGGGGCAAUGUCCAUGUACCGACUUUGCA----GAGGAACGGCGCAAACAAAGGUAAAUUCGACUGACGGAGGAACGGAGUCACCAA--GAAUUU-AAUGGACAAUGAACCAAC----AAACG
URS0000D6790D_333849/1-130  UUUUG---GC--CUUUUCGC--GUAG---GCAAAAAU-----GGUGAGGUC-AGCCGACUUGGCG----GAGGAACGCAGCCAACAAAGGUAACUGCGACUGGCGAAGGCACGUAGCCAACAA--GCAGUU-AGACCUUGCCACUA--GC----CAAAA
URS0000D6BA45_333849/1-131  CUUUU---GC--UUUUUUGC--CCUG---GUAAAAAU------GACUGAAUCGGCUGACUUGGCG----GAGGAACGCAGCCAACCAAAGCAACUGCGACUGGCGAAGGCACGUAGCCACCAA--GCAGUUAGAUUCUGUCACUGG--GC----AAAAG
URS0000D6C74D_333849/1-131  CUUUU---GC--UUUUUUGC--CCUG---GCAAAAAU------GACUGAAUCGGCUGACUUGGCG----GAGGAACGCAGCCAACCAAAGCAACUGCGACUGGCGAAGGCACGUAGCCAUCAA--GCGGUUAGAUUCUGUCACUAG--GC----AAAAG
URS0000D6A8EB_1134801/1-150 ACUGCGGAACGCUUCCUUGUG-AUCC--CACAAGGAACAACUCGUGUCAAUGGACUUUUCCGUU-AAGCGAGGAACGAG-UAGG-AAAAGGAAACGUUC-CCCAAUCGGAACGAAUGGGUAGAGAACGUUU-AAUUGACUCGUGUUGAGUGCA-GCAGU
URS0000D6A8EB_1158630/1-150 ACUGCGGAACGCUUCCUUGUG-AUCC--CACAAGGAACAACUCGUGUCAAUGGACUUUUCCGUU-AAGCGAGGAACGAG-UAGG-AAAAGGAAACGUUC-CCCAAUCGGAACGAAUGGGUAGAGAACGUUU-AAUUGACUCGUGUUGAGUGCA-GCAGU
URS0000D6A8EB_1169296/1-150 ACUGCGGAACGCUUCCUUGUG-AUCC--CACAAGGAACAACUCGUGUCAAUGGACUUUUCCGUU-AAGCGAGGAACGAG-UAGG-AAAAGGAAACGUUC-CCCAAUCGGAACGAAUGGGUAGAGAACGUUU-AAUUGACUCGUGUUGAGUGCA-GCAGU
URS0000D6A8EB_565643/1-150  ACUGCGGAACGCUUCCUUGUG-AUCC--CACAAGGAACAACUCGUGUCAAUGGACUUUUCCGUU-AAGCGAGGAACGAG-UAGG-AAAAGGAAACGUUC-CCCAAUCGGAACGAAUGGGUAGAGAACGUUU-AAUUGACUCGUGUUGAGUGCA-GCAGU
URS0000D6A8EB_699185/1-150  ACUGCGGAACGCUUCCUUGUG-AUCC--CACAAGGAACAACUCGUGUCAAUGGACUUUUCCGUU-AAGCGAGGAACGAG-UAGG-AAAAGGAAACGUUC-CCCAAUCGGAACGAAUGGGUAGAGAACGUUU-AAUUGACUCGUGUUGAGUGCA-GCAGU
URS0000D6A8EB_749517/1-150  ACUGCGGAACGCUUCCUUGUG-AUCC--CACAAGGAACAACUCGUGUCAAUGGACUUUUCCGUU-AAGCGAGGAACGAG-UAGG-AAAAGGAAACGUUC-CCCAAUCGGAACGAAUGGGUAGAGAACGUUU-AAUUGACUCGUGUUGAGUGCA-GCAGU
URS0000D6A8EB_1158627/1-150 ACUGCGGAACGCUUCCUUGUG-AUCC--CACAAGGAACAACUCGUGUCAAUGGACUUUUCCGUU-AAGCGAGGAACGAG-UAGG-AAAAGGAAACGUUC-CCCAAUCGGAACGAAUGGGUAGAGAACGUUU-AAUUGACUCGUGUUGAGUGCA-GCAGU
URS0000D6A8EB_1158655/1-150 ACUGCGGAACGCUUCCUUGUG-AUCC--CACAAGGAACAACUCGUGUCAAUGGACUUUUCCGUU-AAGCGAGGAACGAG-UAGG-AAAAGGAAACGUUC-CCCAAUCGGAACGAAUGGGUAGAGAACGUUU-AAUUGACUCGUGUUGAGUGCA-GCAGU
URS0000D6A8EB_1169300/1-150 ACUGCGGAACGCUUCCUUGUG-AUCC--CACAAGGAACAACUCGUGUCAAUGGACUUUUCCGUU-AAGCGAGGAACGAG-UAGG-AAAAGGAAACGUUC-CCCAAUCGGAACGAAUGGGUAGAGAACGUUU-AAUUGACUCGUGUUGAGUGCA-GCAGU
URS0000D6A8EB_749498/1-150  ACUGCGGAACGCUUCCUUGUG-AUCC--CACAAGGAACAACUCGUGUCAAUGGACUUUUCCGUU-AAGCGAGGAACGAG-UAGG-AAAAGGAAACGUUC-CCCAAUCGGAACGAAUGGGUAGAGAACGUUU-AAUUGACUCGUGUUGAGUGCA-GCAGU
URS0000D6CD7A_1169314/1-150 ACUGCGGAACGCUUCCUUGUG-AUCC--CACAAGGAACAACUCGUGUCAAUGUCCUUUUCCGUU-AAGCGAGGAACGAG-UAGG-AAAAGGAAACGUUC-CCCAAUCGGAACGAAUGGGUAGAGAACGUUU-AAUUGACUCGUGUUGAGUGCA-GCAGU
URS0000D69AD0_1157349/1-150 ACUGCGGAACGCUUCCUUGUG-AUCC--CACAAGGAACAACUCGUGUCAAUGGCCUUUUCCGUU-AAGCGAGGAACGAG-UAGG-AAAAGGAAACGUUC-CCCAAUCGGAACGAAUGGGUAGAGAACGUUU-AAUUGACUCGUGUUGAGUGCA-GCAGU
URS0000D69AD0_1157360/1-150 ACUGCGGAACGCUUCCUUGUG-AUCC--CACAAGGAACAACUCGUGUCAAUGGCCUUUUCCGUU-AAGCGAGGAACGAG-UAGG-AAAAGGAAACGUUC-CCCAAUCGGAACGAAUGGGUAGAGAACGUUU-AAUUGACUCGUGUUGAGUGCA-GCAGU
URS0000D69AD0_1157390/1-150 ACUGCGGAACGCUUCCUUGUG-AUCC--CACAAGGAACAACUCGUGUCAAUGGCCUUUUCCGUU-AAGCGAGGAACGAG-UAGG-AAAAGGAAACGUUC-CCCAAUCGGAACGAAUGGGUAGAGAACGUUU-AAUUGACUCGUGUUGAGUGCA-GCAGU
URS0000D69AD0_565646/1-150  ACUGCGGAACGCUUCCUUGUG-AUCC--CACAAGGAACAACUCGUGUCAAUGGCCUUUUCCGUU-AAGCGAGGAACGAG-UAGG-AAAAGGAAACGUUC-CCCAAUCGGAACGAAUGGGUAGAGAACGUUU-AAUUGACUCGUGUUGAGUGCA-GCAGU
URS0000D69AD0_1134809/1-150 ACUGCGGAACGCUUCCUUGUG-AUCC--CACAAGGAACAACUCGUGUCAAUGGCCUUUUCCGUU-AAGCGAGGAACGAG-UAGG-AAAAGGAAACGUUC-CCCAAUCGGAACGAAUGGGUAGAGAACGUUU-AAUUGACUCGUGUUGAGUGCA-GCAGU
URS0000D69AD0_1151204/1-150 ACUGCGGAACGCUUCCUUGUG-AUCC--CACAAGGAACAACUCGUGUCAAUGGCCUUUUCCGUU-AAGCGAGGAACGAG-UAGG-AAAAGGAAACGUUC-CCCAAUCGGAACGAAUGGGUAGAGAACGUUU-AAUUGACUCGUGUUGAGUGCA-GCAGU
URS0000D69AD0_1158673/1-150 ACUGCGGAACGCUUCCUUGUG-AUCC--CACAAGGAACAACUCGUGUCAAUGGCCUUUUCCGUU-AAGCGAGGAACGAG-UAGG-AAAAGGAAACGUUC-CCCAAUCGGAACGAAUGGGUAGAGAACGUUU-AAUUGACUCGUGUUGAGUGCA-GCAGU
URS0000D69AD0_1157388/1-150 ACUGCGGAACGCUUCCUUGUG-AUCC--CACAAGGAACAACUCGUGUCAAUGGCCUUUUCCGUU-AAGCGAGGAACGAG-UAGG-AAAAGGAAACGUUC-CCCAAUCGGAACGAAUGGGUAGAGAACGUUU-AAUUGACUCGUGUUGAGUGCA-GCAGU
URS0000D65F21_1158618/1-150 ACUGCGGAACGCUUCCUUGUG-AUCC--CACAAGGAACAACUCGUGUCAAUGGCCUUUUCCGUU-AAGCGAGGAACGAG-UAGG-AAAAGGAAACGUUC-CCCAAUCGGCACGAAUGGGAAUAGAACGUUU-AAUUGACUCGUGUUGAGUGCA-GCAGU
URS0000D6B8DF_1151199/1-150 ACUGCGGAACGCUUCCUUGUG-AUCC--CACAAGGAACAACUCGUGUCAAUGGACUUUUCCGUU-AAGCGAGGAACGAG-UAGG-AAAAGGAAACGUUC-CCCAGUCGGAACGAAUGGGAAUAGAACGUUU-AAUUGACUCGUGUUGAGUGCA-GCAGU
URS0000D660A6_1158633/1-150 UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUUUUCCGUU-AAGCGAGGAACGAG-UAGG-AAAAGGAAACGUUC-CUCAUUCGGAACGAAUGGGAAUAGAACGUUU-AAUUGACUCGUGUUGAGUGCA-GCAGA
URS0000D660A6_491074/1-150  UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUUUUCCGUU-AAGCGAGGAACGAG-UAGG-AAAAGGAAACGUUC-CUCAUUCGGAACGAAUGGGAAUAGAACGUUU-AAUUGACUCGUGUUGAGUGCA-GCAGA
URS0000D660A6_1158628/1-150 UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUUUUCCGUU-AAGCGAGGAACGAG-UAGG-AAAAGGAAACGUUC-CUCAUUCGGAACGAAUGGGAAUAGAACGUUU-AAUUGACUCGUGUUGAGUGCA-GCAGA
URS0000D68243_1158633/1-150 ACUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUUUUCCGUU-AAGCGAGGAACGAG-CAGG-AAAAGGAAACGUUC-CCCAGUCGGCACGAAUGGGAAUAGAAUGUUU-AAUUGACGCGCGUUGAGUGCA-GCAGU
URS0000D6B748_1158661/1-150 ACUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUUUUCCGUU-AAGCGAGGAACGAG-CAGG-AAAAGGAAACGUUC-CCCAGUCGGCACGAAUGGGAAUAGAACGUUU-AAUUGACGCGCGUUGAGUGCA-GCAGU
URS0000D6B748_525278/1-150  ACUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUUUUCCGUU-AAGCGAGGAACGAG-CAGG-AAAAGGAAACGUUC-CCCAGUCGGCACGAAUGGGAAUAGAACGUUU-AAUUGACGCGCGUUGAGUGCA-GCAGU
URS0000D6B748_1158625/1-150 ACUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUUUUCCGUU-AAGCGAGGAACGAG-CAGG-AAAAGGAAACGUUC-CCCAGUCGGCACGAAUGGGAAUAGAACGUUU-AAUUGACGCGCGUUGAGUGCA-GCAGU
URS0000D6B748_1169307/1-150 ACUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUUUUCCGUU-AAGCGAGGAACGAG-CAGG-AAAAGGAAACGUUC-CCCAGUCGGCACGAAUGGGAAUAGAACGUUU-AAUUGACGCGCGUUGAGUGCA-GCAGU
URS0000D6B748_491074/1-150  ACUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUUUUCCGUU-AAGCGAGGAACGAG-CAGG-AAAAGGAAACGUUC-CCCAGUCGGCACGAAUGGGAAUAGAACGUUU-AAUUGACGCGCGUUGAGUGCA-GCAGU
URS0000D6CE53_936153/1-150  UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUUUUCCGUU-AAGCGAGGAACGAG-CAGG-AAAAGGAAACGUUC-CCCAGUCGGCACGAAUGGGAAUAGAACGUUU-AAUUGACGCGCGUUGAGUGCA-GCAGU
URS0000D6CE53_749494/1-150  UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUUUUCCGUU-AAGCGAGGAACGAG-CAGG-AAAAGGAAACGUUC-CCCAGUCGGCACGAAUGGGAAUAGAACGUUU-AAUUGACGCGCGUUGAGUGCA-GCAGU
URS0000D677BF_565639/1-150  UCUGUUAAACGUUUCCUUGUG-GUCU--CACAAGGAACAACGCGUGUCAAUGUCCUUUUCCGUC-AAGCGAGGAACGA-GUAGGAAAAGGAAACGUUC--CCCAGUCGGAACGAAUGGGAAUAG-GACGUUUAAUUGACUCGUGUUGAGUGCA-ACAGA
URS0000D6BE27_1158620/1-150 UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUU-UUCCGUUAAGCGAGGAACGAGUAGGAAAAGAGAAACGUUC--CCCAAUCGGCACGAAUGGGAAUAG-AACGUUUAAUUGACUGGUUCUG-UUGCA-AAGUU
URS0000D6B467_749518/1-150  ACUGCGGAACGCUUCCUUGUG-AUCC--CACAAGGAACAACUCGUGUCAAUGG-CUUUUUCCGUUAAGCGAGGAACGAGUAGGA-AAAGGAAACGUUCA--CCAGUCGGAACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGU
URS0000D65F36_565647/1-150  ACUGCGGAACGCUUCCUUGUG-AUCC--CACAAGGAACAACUCGUGUCAAUGG-CUUUUUCCGUUAAGCGAGGAACGAG-UAGAAAAAGGAAACGUUCA--CCAGUCGGAACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGU
URS0000D68788_749514/1-150  UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUUUUCCGUU-AAGCGAGGAACGAG-UAGGAAAAGGAAACGUUCA--CCAGUCGGAACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGA
URS0000D69818_1169250/1-150 ACUGCGGAACGCUUCCUUGUG-AUCC--CACAAGGAACAACUCGUGUCAAUGGCCUUUUCCGUU-AAGCGAGGAACGAG-UAGGAAAAGGAAACGUUCA--CCAGUCGGAACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGU
URS0000D69818_749512/1-150  ACUGCGGAACGCUUCCUUGUG-AUCC--CACAAGGAACAACUCGUGUCAAUGGCCUUUUCCGUU-AAGCGAGGAACGAG-UAGGAAAAGGAAACGUUCA--CCAGUCGGAACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGU
URS0000D69818_1169291/1-150 ACUGCGGAACGCUUCCUUGUG-AUCC--CACAAGGAACAACUCGUGUCAAUGGCCUUUUCCGUU-AAGCGAGGAACGAG-UAGGAAAAGGAAACGUUCA--CCAGUCGGAACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGU
URS0000D65EFF_749491/1-151  UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUU-UUCCGUUAAGCGAGGAACGAGUAGGAAAAGAGAAACGUUC--CCCAAUCGGCACGAAUGGGAAUAG-GACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGA
URS0000D67542_749495/1-151  UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUU-UUCCGUUAAGCGAGGAACGAGUAGGAAAAGAGAAACGUUC--CCCAAUCGGCACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGA
URS0000D67542_749512/1-151  UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUU-UUCCGUUAAGCGAGGAACGAGUAGGAAAAGAGAAACGUUC--CCCAAUCGGCACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGA
URS0000D6C40E_749518/1-150  UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUU-UUCCGUUAAGCGAGGAACGAGUAGGAAAAGAGAAACGUU---CCCAAUCGGCACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGA
URS0000D67542_1169307/1-151 UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUU-UUCCGUUAAGCGAGGAACGAGUAGGAAAAGAGAAACGUUC--CCCAAUCGGCACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGA
URS0000D67542_12908/1-151   UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUU-UUCCGUUAAGCGAGGAACGAGUAGGAAAAGAGAAACGUUC--CCCAAUCGGCACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGA
URS0000D67EF3_1134795/1-151 UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUU-UUCCGUUAAGCGAGGAACGAGUAGGAAAAGAGAAACGUUCA--CCAGUCGGAACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGU
URS0000D662E6_1151209/1-151 UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUAUCAAUGUCCUU-UUCCGUUAAGCGAGGAACGAGUAGGAAAAGAGAAACGUUCA--CCAGUCGGAACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGA
URS0000D66570_699185/1-151  UCUGCGGAACGCUUCCUUGUG-AUCU--CACAAGGAACAACUCGUGUCAAUGUCCUU-UUCCGUUAAGCGAGGAACGAGUAGGAAAAGAGAAACGUUCA--CCAGUCGGAACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGA
URS0000D66570_699186/1-151  UCUGCGGAACGCUUCCUUGUG-AUCU--CACAAGGAACAACUCGUGUCAAUGUCCUU-UUCCGUUAAGCGAGGAACGAGUAGGAAAAGAGAAACGUUCA--CCAGUCGGAACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGA
URS0000D67D4A_1151199/1-151 UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUU-UUCCGUUAAGCGAGGAACGAGUAGGAAAAGAGAAACGUUC--CCCAGUCGGAACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGA
URS0000D6880D_1169300/1-151 UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUU-UUCCGUUAAGCGAGGAACGAGUAGGAAAAGAGAAACGUUCA--CCAGUCGGCACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGA
URS0000D6A17D_1158540/1-151 UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUU-UUCCGUUAAGCGAGGAACGAGUAGGAAAAGAGAAACGUUCA--CCAGUCGGAACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGA
URS0000D6A17D_1158625/1-151 UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUU-UUCCGUUAAGCGAGGAACGAGUAGGAAAAGAGAAACGUUCA--CCAGUCGGAACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGA
URS0000D6A17D_1158657/1-151 UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUU-UUCCGUUAAGCGAGGAACGAGUAGGAAAAGAGAAACGUUCA--CCAGUCGGAACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGA
URS0000D6A17D_1158673/1-151 UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUU-UUCCGUUAAGCGAGGAACGAGUAGGAAAAGAGAAACGUUCA--CCAGUCGGAACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGA
URS0000D6A17D_749498/1-151  UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUU-UUCCGUUAAGCGAGGAACGAGUAGGAAAAGAGAAACGUUCA--CCAGUCGGAACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGA
URS0000D6A17D_749517/1-151  UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUU-UUCCGUUAAGCGAGGAACGAGUAGGAAAAGAGAAACGUUCA--CCAGUCGGAACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGA
URS0000D6A17D_1134801/1-151 UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUU-UUCCGUUAAGCGAGGAACGAGUAGGAAAAGAGAAACGUUCA--CCAGUCGGAACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGA
URS0000D6A17D_1134809/1-151 UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUU-UUCCGUUAAGCGAGGAACGAGUAGGAAAAGAGAAACGUUCA--CCAGUCGGAACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGA
URS0000D6A17D_525278/1-151  UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUU-UUCCGUUAAGCGAGGAACGAGUAGGAAAAGAGAAACGUUCA--CCAGUCGGAACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGA
URS0000D6A17D_1134791/1-151 UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUU-UUCCGUUAAGCGAGGAACGAGUAGGAAAAGAGAAACGUUCA--CCAGUCGGAACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGA
URS0000D6A17D_1158627/1-151 UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUU-UUCCGUUAAGCGAGGAACGAGUAGGAAAAGAGAAACGUUCA--CCAGUCGGAACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGA
URS0000D6A17D_1158658/1-151 UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUU-UUCCGUUAAGCGAGGAACGAGUAGGAAAAGAGAAACGUUCA--CCAGUCGGAACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGA
URS0000D6A17D_1169296/1-151 UCUGCGGAACGCUUCCUUGUG-GUCU--CACAAGGAACAACUCGUGUCAAUGUCCUU-UUCCGUUAAGCGAGGAACGAGUAGGAAAAGAGAAACGUUCA--CCAGUCGGAACGAAUGGGAAUAG-AACGUUUAAUUGACUCGUGUUGAGUGCA-GCAGA
URS0000D6CB4A_1169251/1-149 UCUGCGGAAUGUUUCCUUGUG--AUC--CACAAGGAACAAGAAUUUUCAAUUUGCCGACGCGUU-AAACGAGAUACGAG-UAGC-AGAGGUAAACGUUC-CAUAUUCUGUAGGAAUAUGAGGAGAACGUUU-UAUUGAAAAAUCUUGAAUAUA-GCAGC
URS0000D6CA9F_1169303/1-149 UCUGCGGAAUGUUUCCUUGUG--AUC--CACAAGGAACAAGAAUUUUCAAUUUGCCGACGCGUU-AAACGAGAUACGAG-UAGC-AGAGGUAAACGUUC-CAUAUUCUGCAGGAAUAUGAGGAGAACGUUU-UAUUGAAAAAUCUUGAAUAUA-GCAGC
URS0000D66103_1169251/1-149 UCUGCGGAAUGUUUCCUUGUG--AUC--CACAAGGAACAAGAAUUUUCAAUUUGCCGGCACGUU-AAGCGAGAUACGAG-UAGU-AGAGGUAAACGUUC-CAUAUUCUGCAGGAAUAUGAGAAGAACGUUU-UAUUGAAAAAUCUUGAAUGCA-GCAGU
URS0000D66103_1169303/1-149 UCUGCGGAAUGUUUCCUUGUG--AUC--CACAAGGAACAAGAAUUUUCAAUUUGCCGGCACGUU-AAGCGAGAUACGAG-UAGU-AGAGGUAAACGUUC-CAUAUUCUGCAGGAAUAUGAGAAGAACGUUU-UAUUGAAAAAUCUUGAAUGCA-GCAGU
URS0000D675E5_12908/1-152   CGUAUCAGUUAGUUGUUUAUGGUAUCCCCAUAAGCAACUUCCUUUGUCCAUGACCUU-UUUCGUUUCACGAGAAACGAAGAGAAAAAGGGAAUUGUC---CUUGAUCGGAACGAGCAAGAUCA--GAAAAUUAAUGGACAAGGGAAAAGAGGA-GUUAA
URS0000D68900_1140001/1-152 AUGACGUAUCAGUUGUUUAUGGUAUCUCCACAAGCAACUUCCUUUGUCCAUGACCUUCUUCGUUUCAC-GAGAAACGAA-GAGAAAAAGGGAAUUGUU--UUUGAUCGGAACGAGCAAGAUCAG-AAAAUU-AAUUGACAAGGGAAGAGAGGA-GUUAA
#=GC SS_cons                [[[[[---[[,,<<<<<<<<<.____..>>>>>>>>>((((((((((((((,,,<<---<<_____________________>>---->>,<<<<<<--.<<<<___________>>>>-----.>>>>>>.,)))))))))))))),]]---.]]]]]
#=GC RF                     ccugcGGAgcGcuUccUUGuG.auuu..CaCAAggAacaacccguguCaAuGucCcuauucggUuAAgCGAGGAACGAgguagaaAAAgGaAAccguua.cccagucGGaACGaAugggaauAG.acggUU.AaUuGacacggguugAgcGcA.gcagg
//
