INFERNAL1/a [1.1.5 | Sep 2023] NAME emrB-Lactobacillus ACC RF02971 DESC emrB-Lactobacillus RNA STATES 207 NODES 54 CLEN 66 W 86 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 21:54:07 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02971/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 39 EFFN 2.613647 CKSUM 2233767479 NULL 0.000 0.000 0.000 0.000 GA 60.80 TC 61.70 NC 43.50 EFP7GF -9.8687 0.71904 ECMLC 0.61641 -5.31922 3.95499 1600000 364678 0.003291 ECMGC 0.39292 -12.87852 0.98437 1600000 92828 0.004309 ECMLI 0.52054 -5.02583 5.47096 1600000 283256 0.004236 ECMGI 0.43300 -7.20569 4.74989 1600000 70847 0.005646 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 86 110 -7.204 -7.411 -0.044 -5.825 IL 1 1 2 1 4 2 24 89 113 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 2 24 88 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 2 24 86 110 -8.580 -0.016 -6.897 -1.467 -1.145 -2.209 1.570 D 4 2 3 5 3 0 18 84 109 -5.620 -0.734 -1.403 IL 5 5 3 5 3 2 22 86 111 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 82 - G - - MR 6 5 3 8 3 2 23 85 109 -8.580 -0.016 -6.897 -2.083 -3.374 1.816 -2.761 D 7 5 3 8 3 0 16 83 108 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 22 85 110 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 81 - A - - MR 9 8 3 11 5 2 22 84 108 -7.304 -0.034 -7.120 -7.332 -8.224 1.805 -2.857 -2.441 -2.449 D 10 8 3 11 5 0 16 82 107 -5.352 -0.707 -2.978 -4.409 -2.404 IR 11 11 3 11 5 1 20 84 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 80 A U - - MP 12 11 3 16 6 3 22 83 107 -9.211 -9.150 -0.020 -7.926 -8.206 -8.601 -4.241 -3.165 -4.218 3.559 -4.793 -5.908 -0.462 -4.229 -4.101 0.592 -4.670 -0.576 -0.877 -5.013 -2.401 -3.032 ML 13 11 3 16 6 1 17 81 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 3 16 6 1 17 81 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 3 16 6 0 13 78 103 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 19 82 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 19 82 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 79 C G - - MP 18 17 6 22 6 3 20 81 105 -9.211 -9.150 -0.020 -7.926 -8.206 -8.601 -4.902 -4.915 -4.652 -1.165 -1.537 -5.093 3.668 -4.274 -4.726 -1.003 -4.979 -2.954 0.087 -5.010 -1.196 -3.588 ML 19 17 6 22 6 1 17 79 104 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 1 16 79 104 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 0 12 77 101 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 18 80 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 18 80 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 78 u a - - MP 24 23 6 28 6 3 18 79 103 -9.211 -9.150 -0.020 -7.926 -8.206 -8.601 -3.738 -3.738 -3.632 -0.083 -2.620 -4.209 1.676 -3.324 -3.654 0.097 -4.050 -1.812 2.550 -3.897 1.898 -2.559 ML 25 23 6 28 6 1 16 78 102 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 14 77 102 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 12 76 100 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 17 78 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 16 78 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 77 C G - - MP 30 29 6 34 4 2 16 77 101 -7.204 -7.411 -0.044 -5.825 -4.114 -4.109 -3.894 -0.346 -2.678 -4.370 3.115 -3.446 -3.917 -0.163 -4.253 -2.131 0.918 -4.207 1.454 -2.772 ML 31 29 6 34 4 1 14 77 101 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 4 1 13 76 101 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 33 29 6 34 4 0 12 75 99 -4.568 -4.250 -2.265 -0.520 IL 34 34 5 34 4 1 15 78 102 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 35 35 6 35 3 1 15 77 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 6 - A - - - ML 36 35 6 38 3 1 14 75 99 -8.580 -0.016 -6.897 1.805 -2.857 -2.441 -2.449 D 37 35 6 38 3 0 11 73 98 -5.620 -0.734 -1.403 IL 38 38 3 38 3 1 14 75 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 76 - A - - MR 39 38 3 41 3 1 13 74 98 -8.580 -0.016 -6.897 1.805 -2.857 -2.441 -2.449 D 40 38 3 41 3 0 10 72 96 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 13 74 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 75 - A - - MR 42 41 3 44 3 1 12 73 97 -8.580 -0.016 -6.897 1.805 -2.857 -2.441 -2.449 D 43 41 3 44 3 0 9 71 95 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 12 73 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 74 - A - - MR 45 44 3 47 3 1 12 72 96 -8.580 -0.016 -6.897 1.805 -2.857 -2.441 -2.449 D 46 44 3 47 3 0 9 70 94 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 11 72 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 73 - G - - MR 48 47 3 50 3 1 11 71 95 -8.580 -0.016 -6.897 -1.565 -3.010 1.745 -2.420 D 49 47 3 50 3 0 8 69 94 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 11 71 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 72 - A - - MR 51 50 3 53 3 1 10 70 94 -8.580 -0.016 -6.897 1.805 -2.857 -2.441 -2.449 D 52 50 3 53 3 0 8 68 93 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 10 70 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 71 - A - - MR 54 53 3 56 2 1 9 69 93 -8.640 -0.004 1.805 -2.857 -2.441 -2.449 D 55 53 3 56 2 0 8 68 92 -4.432 -0.068 IR 56 56 3 56 2 1 9 69 94 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 15 ] - - - - - - B 57 56 3 58 117 0 8 67 92 [ BEGL 16 ] - - - - - - S 58 57 1 59 4 0 0 35 54 -0.041 -6.969 -6.376 -7.016 [ MATP 17 ] 7 28 G C - - MP 59 58 1 63 6 2 2 35 54 -9.211 -9.150 -0.020 -7.926 -8.206 -8.601 -4.976 -3.200 -5.095 0.071 -5.835 -4.831 -1.051 -5.445 -4.520 3.683 -4.842 -0.546 -1.355 -4.621 -3.104 -3.973 ML 60 58 1 63 6 1 1 34 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 1 63 6 1 1 34 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 1 63 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 35 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 8 27 c g - - MP 65 64 6 69 6 2 2 33 52 -9.211 -9.150 -0.020 -7.926 -8.206 -8.601 -3.845 -3.795 -3.728 -0.005 -2.644 -4.311 2.929 -3.359 -3.726 0.199 -4.124 -1.754 1.931 -3.988 0.314 -2.587 ML 66 64 6 69 6 1 1 32 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 32 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 33 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 9 26 A U - - MP 71 70 6 75 6 2 2 31 50 -9.211 -9.150 -0.020 -7.926 -8.206 -8.601 -4.241 -3.165 -4.218 3.559 -4.793 -5.908 -0.462 -4.229 -4.101 0.592 -4.670 -0.576 -0.877 -5.013 -2.401 -3.032 ML 72 70 6 75 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 6 75 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 10 25 U A - - MP 77 76 6 81 6 2 2 29 48 -9.211 -9.150 -0.020 -7.926 -8.206 -8.601 -4.121 -4.061 -3.919 -0.302 -2.746 -4.422 1.892 -3.495 -3.938 -0.084 -4.285 -2.034 3.131 -4.228 -0.421 -2.787 ML 78 76 6 81 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 80 76 6 81 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 81 81 5 81 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 11 24 A U - - MP 83 82 6 87 6 2 2 27 46 -9.211 -9.150 -0.020 -7.926 -8.206 -8.601 -4.241 -3.165 -4.218 3.559 -4.793 -5.908 -0.462 -4.229 -4.101 0.592 -4.670 -0.576 -0.877 -5.013 -2.401 -3.032 ML 84 82 6 87 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 85 82 6 87 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 86 82 6 87 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 87 87 5 87 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 88 88 6 88 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 12 23 u g - - MP 89 88 6 93 6 2 2 25 44 -9.211 -9.150 -0.020 -7.926 -8.206 -8.601 -3.210 -2.966 -3.258 1.433 -2.741 -4.063 1.477 -3.218 -3.260 1.095 -3.751 -0.883 0.977 -3.476 2.242 -2.221 ML 90 88 6 93 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 91 88 6 93 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 6 93 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 93 93 5 93 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 13 22 u a - - MP 95 94 6 99 4 2 2 23 42 -2.546 -7.411 -0.965 -1.687 -3.378 -3.270 -3.388 0.435 -2.594 -4.111 1.952 -3.203 -3.386 1.084 -3.858 -1.232 2.609 -3.578 0.073 -2.285 ML 96 94 6 99 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 97 94 6 99 4 1 1 21 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 98 94 6 99 4 0 0 20 38 -4.568 -4.250 -2.265 -0.520 IL 99 99 5 99 4 1 1 23 41 -1.492 -1.191 -2.382 -6.119 0.000 0.000 0.000 0.000 IR 100 100 6 100 3 1 1 19 38 -1.951 -0.511 -4.651 0.000 0.000 0.000 0.000 [ MATL 24 ] 16 - U - - - ML 101 100 6 103 3 1 1 17 36 -7.739 -0.024 -6.394 -0.345 -0.508 -1.199 1.052 D 102 100 6 103 3 0 0 16 35 -8.175 -0.273 -2.567 IL 103 103 3 103 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 17 - U - - - ML 104 103 3 106 3 1 1 16 35 -8.204 -0.017 -6.858 -1.529 -1.252 -2.271 1.598 D 105 103 3 106 3 0 0 16 34 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 18 - g - - - ML 107 106 3 109 3 1 1 15 33 -8.204 -0.017 -6.858 -0.131 -1.269 0.871 -0.247 D 108 106 3 109 3 0 0 15 33 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 19 - A - - - ML 110 109 3 112 3 1 1 13 31 -8.204 -0.017 -6.858 1.805 -2.857 -2.441 -2.449 D 111 109 3 112 3 0 0 13 32 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 20 - U - - - ML 113 112 3 115 2 1 1 1 1 * 0.000 -1.110 -0.384 -1.865 1.319 D 114 112 3 115 2 0 0 0 0 * 0.000 IL 115 115 3 115 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 29 ] - - - - - - E 116 115 3 -1 0 0 0 0 0 [ BEGR 30 ] - - - - - - S 117 57 1 118 3 0 0 47 72 -8.204 -0.017 -6.858 IL 118 118 2 118 3 1 1 49 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 29 - G - - - ML 119 118 2 121 3 1 1 47 72 -8.204 -0.148 -3.412 0.300 -1.771 1.027 -1.191 D 120 118 2 121 3 0 0 45 70 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 48 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 30 - u - - - ML 122 121 3 124 3 1 1 46 71 -8.075 -0.046 -5.168 -0.350 -0.781 0.371 0.423 D 123 121 3 124 3 0 0 44 70 -7.124 -0.637 -1.515 IL 124 124 3 124 3 1 1 47 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 31 - a - - - ML 125 124 3 127 3 1 1 45 70 -8.179 -0.018 -6.833 0.725 -0.771 -1.106 0.375 D 126 124 3 127 3 0 0 43 68 -6.417 -1.260 -0.809 IL 127 127 3 127 3 1 1 46 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 32 - U - - - ML 128 127 3 130 3 1 1 44 69 -3.613 -0.137 -6.858 -1.382 -0.985 -2.124 1.527 D 129 127 3 130 3 0 0 42 67 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 1 44 69 -1.722 -0.621 -4.422 0.000 0.000 0.000 0.000 [ MATL 35 ] 34 - u - - - ML 131 130 3 133 3 1 1 42 68 -8.204 -0.017 -6.858 -0.580 -1.027 -0.194 0.976 D 132 130 3 133 3 0 0 41 66 -6.174 -1.687 -0.566 IL 133 133 3 133 3 1 1 44 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 35 - A - - - ML 134 133 3 136 3 1 1 41 67 -8.204 -0.017 -6.858 1.805 -2.857 -2.441 -2.449 D 135 133 3 136 3 0 0 40 65 -6.174 -1.687 -0.566 IL 136 136 3 136 3 1 1 43 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 36 - A - - - ML 137 136 3 139 3 1 1 40 66 -8.204 -0.017 -6.858 1.805 -2.857 -2.441 -2.449 D 138 136 3 139 3 0 0 39 64 -6.174 -1.687 -0.566 IL 139 139 3 139 3 1 1 42 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 37 - U - - - ML 140 139 3 142 3 1 1 39 65 -8.204 -0.017 -6.858 -1.939 -1.858 -2.692 1.726 D 141 139 3 142 3 0 0 38 63 -6.174 -1.687 -0.566 IL 142 142 3 142 3 1 1 41 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 38 - A - - - ML 143 142 3 145 5 1 1 38 64 -7.304 -0.034 -7.120 -7.332 -8.224 1.552 -2.027 -1.045 -1.567 D 144 142 3 145 5 0 0 37 62 -4.959 -0.803 -4.221 -2.596 -2.508 IL 145 145 3 145 5 1 1 39 64 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 39 70 U A - - MP 146 145 3 150 6 2 2 37 63 -9.211 -9.150 -0.020 -7.926 -8.206 -8.601 -4.784 -4.619 -4.554 -0.877 -3.377 -5.061 0.959 -4.111 -4.554 -0.697 -4.897 -2.499 3.551 -4.908 -1.040 -3.309 ML 147 145 3 150 6 1 1 36 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 3 150 6 1 1 35 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 3 150 6 0 0 33 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 37 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 37 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 40 69 A U - - MP 152 151 6 156 6 2 2 35 61 -9.211 -9.150 -0.020 -7.926 -8.206 -8.601 -3.727 -2.695 -3.806 3.182 -4.482 -5.215 -0.152 -3.971 -3.679 1.682 -4.237 0.058 -0.410 -4.293 -2.073 -2.625 ML 153 151 6 156 6 1 1 34 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 34 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 31 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 35 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 35 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 41 68 a u - - MP 158 157 6 162 6 2 2 33 59 -9.211 -9.150 -0.020 -7.926 -8.206 -8.601 -3.493 -2.507 -3.556 2.493 -4.166 -4.645 0.135 -3.836 -3.532 2.178 -4.034 1.384 -0.114 -3.818 -1.763 -2.443 ML 159 157 6 162 6 1 1 32 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 32 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 29 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 33 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 33 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 42 67 u a - - MP 164 163 6 168 6 2 2 31 57 -9.211 -9.150 -0.020 -7.926 -8.206 -8.601 -3.821 -3.779 -3.706 -0.018 -2.640 -4.287 2.327 -3.352 -3.712 0.193 -4.109 -1.761 2.733 -3.966 0.023 -2.581 ML 165 163 6 168 6 1 1 30 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 6 1 1 30 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 6 168 6 0 0 27 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 1 31 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 31 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 43 66 u a - - MP 170 169 6 174 6 2 2 29 55 -9.211 -6.034 -0.058 -7.926 -8.206 -6.089 -3.836 -3.815 -3.726 -0.108 -2.688 -4.304 1.752 -3.397 -3.741 0.093 -4.137 -1.845 2.967 -3.987 0.734 -2.620 ML 171 169 6 174 6 1 1 28 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 6 1 1 28 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 173 169 6 174 6 0 0 26 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 174 174 5 174 6 1 1 29 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 175 175 6 175 5 1 1 29 54 -2.528 -0.450 -6.039 -4.207 -5.313 0.000 0.000 0.000 0.000 [ MATP 45 ] 44 64 a u - - MP 176 175 6 180 6 2 2 27 53 -9.193 -9.132 -0.103 -7.909 -8.189 -4.114 -3.454 -2.651 -3.504 2.882 -3.678 -4.550 0.608 -3.664 -3.488 1.777 -3.997 -0.269 0.583 -3.782 -1.335 -2.405 ML 177 175 6 180 6 1 1 26 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 178 175 6 180 6 1 1 26 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 179 175 6 180 6 0 0 25 50 -9.336 -8.034 -3.831 -4.514 -4.531 -0.256 IL 180 180 5 180 6 1 1 27 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 181 181 6 181 5 1 1 27 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 45 63 g c - - MP 182 181 6 186 4 2 2 25 51 -6.958 -7.165 -0.335 -2.381 -3.154 -2.479 -3.165 1.174 -3.134 -3.897 1.427 -3.400 -3.302 2.589 -3.739 -0.059 1.196 -3.195 -0.749 -2.134 ML 183 181 6 186 4 1 1 25 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 184 181 6 186 4 1 1 26 51 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 185 181 6 186 4 0 0 25 50 -5.661 -5.342 -3.358 -0.221 IL 186 186 5 186 4 1 1 26 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 187 187 6 187 3 1 1 25 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 46 - c - - - ML 188 187 6 190 3 1 1 22 47 -7.724 -0.024 -6.378 -0.056 0.651 -1.122 0.012 D 189 187 6 190 3 0 0 25 50 -3.721 -0.398 -2.597 IL 190 190 3 190 3 1 1 28 54 -1.043 -1.078 -4.598 0.000 0.000 0.000 0.000 [ MATL 48 ] 52 - a - - - ML 191 190 3 193 3 1 1 19 37 -8.204 -0.017 -6.858 0.292 -0.600 -0.158 0.287 D 192 190 3 193 3 0 0 18 37 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 53 - u - - - ML 194 193 3 196 3 1 1 18 36 -8.204 -0.017 -6.858 0.124 -0.572 -0.539 0.631 D 195 193 3 196 3 0 0 17 36 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 54 - U - - - ML 197 196 3 199 3 1 1 17 35 -8.204 -0.241 -2.731 -0.367 -0.960 -1.528 1.241 D 198 196 3 199 3 0 0 16 34 -6.174 -1.687 -0.566 IL 199 199 3 199 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 55 - a - - - ML 200 199 3 202 3 1 1 16 33 -1.832 -0.626 -3.815 0.895 -0.978 -0.560 -0.067 D 201 199 3 202 3 0 0 11 28 -7.525 -0.663 -1.462 IL 202 202 3 202 3 1 1 16 33 -1.550 -1.414 -1.821 0.000 0.000 0.000 0.000 [ MATL 52 ] 62 - g - - - ML 203 202 3 205 2 1 1 1 1 * 0.000 -0.059 -1.057 0.744 -0.178 D 204 202 3 205 2 0 0 0 0 * 0.000 IL 205 205 3 205 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 53 ] - - - - - - E 206 205 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME emrB-Lactobacillus ACC RF02971 DESC emrB-Lactobacillus RNA LENG 66 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 21:54:07 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02971/CM NSEQ 39 EFFN 4.127563 CKSUM 2233767479 STATS LOCAL MSV -7.8301 0.71904 STATS LOCAL VITERBI -8.9335 0.71904 STATS LOCAL FORWARD -3.1191 0.71904 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.06039 1.94103 1.55143 1.21006 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 0.00000 * 1 2.80999 2.39391 3.32847 0.20742 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 2 0.14644 3.67903 2.49243 3.56616 2 A - - ( 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 3 3.96920 0.10473 3.81252 2.83958 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 4 3.05614 1.78382 2.86219 0.31774 4 U - - ( 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 5 3.21586 0.48252 3.02351 1.22410 5 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 6 0.07396 3.93689 3.60006 3.71061 6 A - - , 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 7 2.90223 3.82796 0.10618 3.72634 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 8 2.83012 0.62745 2.59694 1.10100 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 9 0.14688 3.67439 2.49127 3.56022 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 10 3.18807 1.52606 2.98315 0.37001 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 11 0.14724 3.67059 2.49031 3.55535 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 12 1.59819 1.95918 1.93750 0.66806 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 13 2.45573 1.41559 1.88783 0.65389 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.75748 1.61895 1.09947 0.56014 0.84660 1.09861 0.40547 14 1.75554 1.82047 2.40068 0.55412 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04353 3.84905 3.84905 1.46634 0.26236 0.08357 2.52352 15 2.86268 2.49464 3.38143 0.19073 17 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 16 1.56803 2.46937 0.66876 1.63699 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 17 0.07396 3.93689 3.60006 3.71061 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 18 2.49800 1.69909 3.03094 0.37596 20 U - - _ 1.38629 1.38629 1.38629 1.38629 0.23905 1.61895 4.23256 0.14060 2.03131 1.09861 0.40547 19 0.77401 2.01214 1.21380 2.22496 22 a - - > 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 20 2.26342 2.11652 0.60356 1.47536 23 G - - > 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 21 3.76329 2.86121 3.47341 0.11813 24 U - - > 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 22 0.41694 3.14640 1.40612 2.94049 25 A - - > 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 23 3.76184 2.86094 3.47272 0.11821 26 U - - > 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 24 1.34351 2.76306 0.50980 2.58549 27 G - - > 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 25 3.85585 0.14522 3.64291 2.43228 28 C - - > 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 26 1.17940 2.94428 0.57423 2.56707 29 G - - , 1.38629 1.38629 1.38629 1.38629 0.13912 4.23256 2.15969 1.46634 0.26236 1.09861 0.40547 27 1.76448 2.02750 1.03205 1.07651 30 g - - , 1.38629 1.38629 1.38629 1.38629 0.05536 4.12626 3.27788 1.46634 0.26236 0.22446 1.60418 28 0.82134 2.02313 2.29864 1.11620 31 a - - , 1.38629 1.38629 1.38629 1.38629 0.03005 4.21298 4.21298 1.46634 0.26236 0.61854 0.77377 29 2.73739 2.24547 3.25666 0.23463 32 U - - , 1.38629 1.38629 1.38629 1.38629 0.12745 2.25235 4.23256 0.25636 1.48662 1.09861 0.40547 30 2.00803 2.31150 1.49933 0.60999 34 U - - , 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 31 0.07396 3.93689 3.60006 3.71061 35 A - - , 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 32 0.07396 3.93689 3.60006 3.71061 36 A - - , 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 33 3.28155 3.13738 3.81836 0.10862 37 U - - , 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 34 0.23089 3.16412 2.21689 2.90094 38 A - - , 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 35 3.87480 2.60992 3.70532 0.12657 39 U - - < 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 36 0.36898 3.32752 1.47851 3.10774 40 A - - < 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 37 0.84437 2.98214 0.78096 2.78837 41 g - - < 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 38 2.87903 1.12905 2.65371 0.59769 42 U - - < 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 39 3.00335 1.65581 2.79551 0.35902 43 U - - < 1.38629 1.38629 1.38629 1.38629 0.06167 4.23256 3.09457 1.46634 0.26236 1.09861 0.40547 40 0.54485 2.60483 1.43633 2.22235 44 A - - < 1.38629 1.38629 1.38629 1.38629 0.19490 4.20130 1.81949 1.46634 0.26236 1.63325 0.21728 41 1.82435 1.77110 0.73677 1.66138 45 g - - < 1.38629 1.38629 1.38629 1.38629 0.20693 4.04215 1.77572 1.46634 0.26236 2.70437 0.06926 42 1.49316 0.80984 2.33486 1.45421 46 c - - _ 1.38629 1.38629 1.38629 1.38629 0.09009 2.72649 3.87751 1.40424 0.28177 0.08859 2.46766 43 1.17933 1.85090 1.47224 1.18415 52 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 44 1.30429 1.84094 1.76787 0.91812 53 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 45 1.74860 2.25447 2.71043 0.42382 54 U - - _ 1.38629 1.38629 1.38629 1.38629 0.21499 4.23256 1.72071 1.46634 0.26236 1.09861 0.40547 46 0.70082 2.19129 1.82025 1.46940 55 a - - _ 1.38629 1.38629 1.38629 1.38629 0.21433 2.30533 2.37307 1.09636 0.40659 0.31066 1.32037 47 1.50766 2.26210 0.75618 1.58483 62 g - - _ 1.38629 1.38629 1.38629 1.38629 0.16580 4.13840 1.98896 1.46634 0.26236 1.17933 0.36742 48 1.84711 0.84749 1.62200 1.53102 63 c - - > 1.38629 1.38629 1.38629 1.38629 0.03575 4.04215 4.04215 1.46634 0.26236 0.32257 1.28840 49 2.38527 1.61183 2.41752 0.47921 64 U - - > 1.38629 1.38629 1.38629 1.38629 0.07105 2.92610 4.20130 0.48800 0.95154 0.49526 0.94010 50 0.53256 2.95962 1.20984 2.76754 66 A - - > 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 51 0.69894 2.82097 0.98871 2.64107 67 a - - > 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 52 3.01259 1.30637 2.77855 0.48142 68 U - - > 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 53 3.30775 1.74693 3.11466 0.29477 69 U - - > 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 54 0.14532 3.88611 2.44095 3.58800 70 A - - > 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 55 0.07396 3.93689 3.60006 3.71061 71 A - - , 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 56 0.07396 3.93689 3.60006 3.71061 72 A - - , 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 57 2.84213 3.99051 0.11033 3.58733 73 G - - , 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 58 0.07396 3.93689 3.60006 3.71061 74 A - - , 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 59 0.07396 3.93689 3.60006 3.71061 75 A - - , 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 60 0.07396 3.93689 3.60006 3.71061 76 A - - , 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 61 2.31086 3.18357 0.21283 2.97404 77 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 62 0.82347 3.02756 0.79155 2.82148 78 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 63 2.79171 3.97743 0.10885 3.76849 79 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 64 3.80301 2.86831 3.49188 0.11602 80 U - - ) 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 65 0.07396 3.93689 3.60006 3.71061 81 A - - : 1.38629 1.38629 1.38629 1.38629 0.02946 4.23256 4.23256 1.46634 0.26236 1.09861 0.40547 66 3.38054 4.33498 0.06994 3.89145 82 G - - : 1.38629 1.38629 1.38629 1.38629 0.01484 4.21794 * 1.46634 0.26236 0.00000 * //