# STOCKHOLM 1.0
#=GF ID EGFOA-assoc-1
#=GF AC RF02970
#=GF DE EGFOA-assoc-1 RNA
#=GF AU Weinberg Z; 0000-0002-6681-3624
#=GF GA 224.5
#=GF NC 221.3
#=GF TC 249.4
#=GF SE Weinberg Z
#=GF SS Published; PMID:28977401;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 18.59 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 28977401
#=GF RT Detection of 224 candidate structured RNAs by comparative analysis of
#=GF RT specific subsets of intergenic regions.
#=GF RA Weinberg Z, Lunse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR,
#=GF RA Sherlock ME, Breaker RR
#=GF RL Nucleic Acids Res. 2017;45:10811-10823.
#=GF CC Environmental. Nearby to EGFOA RNA
#=GF WK EGFOA_RNA_motif
#=GF SQ 10

URS0000D6C456_12908/1-250 AAAUGCUUUGUUCACAAGCAGUAAA--UAAGUGAACCUCGAACCUAUCUAGGAAUACGAUAUAGCGUUACUUCCGAACGGCAAACCAUGGCACUACGAAGUAAACGUAUGAUAGGCAAGAG-UAAAGAAAACGC-AUUAAUCAA-GCGUAGUAUAAGGUGGCAUGCGAUUAUGCAAACAUCGAGGUCCUGGAAAAACCGA
URS0000D66B82_12908/1-250 AAAUGCUUUGUUCACAAGCAAUAAA--UAAGUGAACCUCGAACCUAUCUAGGAAUACGGCAUAGCGUUACUUCCGAACGGCAAACCAUGGCACUACGAAGUAAACGUAUGAUAGGUAAGAG-UAAAGAAAACGC-ACUAAUCAA-GCGUAGUAUAAGGCGGCAUGCAAUUAUGCAAACAUCGAGGUCCUGGAAAAACCGA
URS0000D6B331_12908/1-250 AAAUGCUUUGUUCACAAGCAGUAAA--UGAGUGAACCUCAAGCCUAUCUCGGAAUACGGCAGAGCGUUACUUCUGAACGGCAAAUCAUGGCACUAGGAAGUAAACGUAUGAUGGGUGAGAG-UAAAGAAAACGC-ACUAACCAA-GCGUAGUAUAUAGUGGCGUGUAAUCACGCAAACAUCGAGGUUCUGGAAAAACCGA
URS0000D67FFF_12908/1-250 AAAUGCUUUGUUCACAAGCAGUAAA--UGAGUGAACCUCGAGCCUAUCUUGGAAUACGGCAGAGCGUUAUUUCUGAACGGCAAAUCAUGGCACUAGGAAGUAAACGUAUGAUAGGUGAGAG-UAAAGAAAACGC-ACUAACCAA-GCGUAGUAUAUAGUGGCGUGUAAUCACGCAAACAUCGAGGUUCUGGAAAAACCGA
URS0000D6BD5F_12908/1-250 AAAUGCUUUGUUCACAAGCAGUAAA--UGAGUGAACCUCAAGCCUAUCUUGGAAUACGGCAGAGCGUUAUUUCUGAACGGCAAAUCAUGGCACUAGGAAGUAAACGUAUGAUAGGUGAGAG-UAAAGAAAACGC-ACUAACCAA-GCGUAGUAUACAGUGGCGUGUAAUCACGCAAACAUCGAGGUUCUGGAAAAACCGA
URS0000D665FB_12908/1-250 AAAUGCUUUGUUCACAAGCAGUAAA--UGAGUGAACCUCGAACCUAUCUAGGAAUACGACAGAGCGUUAUUUCUGAACGGCAAAUCAUGGCACUAGGAAGUAAACGUAUGAUAGGUGAGAG-UAAAGAAAACGC-ACUGACCAA-GCGUAGUAUAUAGUGGCGUGUAAUCACGCAAACAUCGAGGUUCUGGACAAACCGA
URS0000D69FFF_12908/1-250 AAAUGCUUUGUUCACAAGCAGUAAA--UGAGUGAACCUCGAACCUAUCUAGGAAUACGACAGAGCGUUAUUUCUGAACGGCAAAUCAUGGCACUAGGAAGUAAACGUAUGAUAGGUGAGAG-UAAAGAAAACGC-ACUGACCAA-GCGUAGUAUAUAGUGGCGUGUAAUCACGCAAACAUCGAGGUUCUGGACAAACCGA
URS0000D6A4CE_12908/1-250 ACAUGCCUAGUUAAGAGGUAAUA----UAUCUUAGCCAAUAGCCUUACUAGCUAAAGGGUAAAGCGAUUUUUCUGAAUGGCAAAUCAUGGCACUAGGAAAGAUACCU-UGUAAGUCUAUUGUUAAAGAAAACGACAUCAAUCA-GUCGUAUUAUAUGGUGACAUACGUUUAUGUAAAUGUCGAGGAUUC-GCAAAGCCGA
URS0000D694A4_12908/1-253 AAGUGCUUUGUCAAGAAAGCCUAAAAAAAUCUUGACCAAUCGCCCCUUUGGCAAGAGGGUAGAGCGAUUUCCCUGAAAGGCAAAUCAUGGCACUAAGGGAGAUACCUGUAAGGGUCGGUUG-UAAAGAAAACGA--UUUAUCAA-UCGUAGUAUAUGGUGGCAUGCAAUCAUGCGAACAUCGAGGAUCCAGUCAGACCGA
URS0000D683A6_12908/1-253 AAGUGCUUUGUCAAGAAAGCCUAAAAAAAUCUUGACCAAUCGCCCCUUUGGCAAGAGGGUAGAGCGAUUUCCCUGAAAGGCAAAUCAUGGCACUAAGGGAGAUACCUGUAAGGGUCGGUUG-UAAAGAAAACGA--UUUAUCAA-UCGUAGUAUAUGGUGGCAUACGAUCAUGCAAACAUCGAGGAUCCAGUCAGACCGA
#=GC SS_cons              :::::::::<<<<<<__________..___>>>>>><<<----<<<<<-------<<<--------<<<<<<<<_____________________>>>>>>>>->>>-->>>>>---->>>.::::::::<<<<._________.>>>>:::::::::::<<<<<____>>>>>:::<<<<<_______________>>>
#=GC RF                   AAAUGCUUUGuucacAAgcagUAAA..uaagugaaCCucuagCCucucUaGgAAuacGguAgAGCGuuacuuCcGAAcGGCAAAUCAUGGCACUAgGaaguaaACguaUgagaGgugAgaG.UAAAGAAAaCGc.AuUaAuCAA.gCGuAGUAUAugGUGGCguguaAUcacGCAAACauCGAGGuUcugGaaAAACCGa

URS0000D6C456_12908/1-250 UGUAAAAUAAAUAACAGCACCCGUU---UAGCG--AGCGUGGUGAUA-GGCGUUAUAGGCU
URS0000D66B82_12908/1-250 UGUAAAAUAAAUAACAGCACCCGUU---UAGCG--AGCGUGGUGAUA-GGCGUUAUAGGCU
URS0000D6B331_12908/1-250 UGUAAAAUAAAUAACAGCACCCGUU---UAGCG--AGCGUGGUGAUA-GGCGUUAUAGGCU
URS0000D67FFF_12908/1-250 UGUAAAAUAAAUAACAGCACCCGUU---UAGCG--AGCGUGGUGGGA-GGCGUGAUAGGCU
URS0000D6BD5F_12908/1-250 UGUAAAAUAAAUAACAGCACCCGUU---UAGCG--AGCGUGGUGGGA-GGCGUGAUAGGCU
URS0000D665FB_12908/1-250 UGUAAAAUAAAUAACAGCACCCGUU---UAGCG--AGCGUGGUGAGA-GGCGUUAUAGGCU
URS0000D69FFF_12908/1-250 UGUAAAAUAAAUAACAGCACCCGUU---UAGCG--AGCGUGGUGAUA-GGCGUUAUAGGCU
URS0000D6A4CE_12908/1-250 CAAUAAAUAAAUAACGACGGGGG--AGUUUGCAAG--CCACCUGAGAUAGCGUUAUAGGCU
URS0000D694A4_12908/1-253 UGUAAAACAAAUAAUGGCGGGGGG--AUUAGCACA-CUU-CCUGAGAUAGCGUGAUAGGCU
URS0000D683A6_12908/1-253 UGUAAAACAAAUAAUGGCGGGGGG--AUUAGCACA-CUU-CCUGAGAUAGCGUGAUAGGCU
#=GC SS_cons              >>:::::::::::::::<<<<<<<<..._____..>>>>->>>>:::.:::::::::::::
#=GC RF                   uGUAAAAUAAAUAAcaGCacccGcu...UAGCg..agCgugguGAgA.gGCGUuAUAGGCU
//
