INFERNAL1/a [1.1.5 | Sep 2023] NAME D12-methyl ACC RF02950 DESC D12-methyl RNA STATES 201 NODES 57 CLEN 64 W 89 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 12 14:15:11 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02950/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 19 EFFN 2.129150 CKSUM 2354132048 NULL 0.000 0.000 0.000 0.000 GA 57.00 TC 78.30 NC 49.10 EFP7GF -9.2508 0.71908 ECMLC 0.64582 -8.67954 0.79157 1600000 544025 0.002206 ECMGC 0.41866 -17.91762 -4.87918 1600000 93918 0.004259 ECMLI 0.52392 -9.29805 1.86030 1600000 415038 0.002891 ECMGI 0.42736 -14.08458 -1.88122 1600000 73622 0.005433 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 89 118 -6.938 -8.183 -0.077 -4.637 IL 1 1 2 1 4 1 20 90 119 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 21 90 120 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 74 - G - - MR 3 2 3 5 3 1 20 89 118 -8.424 -0.018 -6.742 -1.739 -2.983 1.757 -2.370 D 4 2 3 5 3 0 17 87 116 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 20 89 119 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 73 - C - - MR 6 5 3 8 3 1 19 88 117 -8.424 -0.101 -3.949 -1.098 1.223 -1.925 -0.098 D 7 5 3 8 3 0 16 86 115 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 19 89 118 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 72 - A - - MR 9 8 3 11 3 1 19 87 116 -8.342 -0.019 -6.660 1.369 -1.415 -1.359 -0.615 D 10 8 3 11 3 0 15 85 115 -6.960 -0.853 -1.190 IR 11 11 3 11 3 1 18 88 117 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 71 - A - - MR 12 11 3 14 3 1 18 86 115 -8.424 -0.018 -6.742 1.439 -1.553 -1.487 -0.759 D 13 11 3 14 3 0 14 84 113 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 18 87 116 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 70 - G - - MR 15 14 3 17 3 1 17 85 114 -8.424 -0.018 -6.742 -1.739 -2.983 1.757 -2.370 D 16 14 3 17 3 0 13 83 112 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 17 86 115 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 69 - G - - MR 18 17 3 20 3 1 16 84 113 -8.424 -0.018 -6.742 -1.739 -2.983 1.757 -2.370 D 19 17 3 20 3 0 12 82 111 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 16 85 114 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 68 - G - - MR 21 20 3 23 3 1 15 83 112 -8.424 -0.018 -6.742 -1.739 -2.983 1.757 -2.370 D 22 20 3 23 3 0 12 81 110 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 15 84 113 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 67 - C - - MR 24 23 3 26 3 1 14 82 111 -8.424 -0.018 -6.742 -0.872 1.301 -1.871 -0.480 D 25 23 3 26 3 0 11 80 109 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 14 83 112 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 66 - G - - MR 27 26 3 29 3 1 13 81 110 -8.424 -0.018 -6.742 -1.739 -2.983 1.757 -2.370 D 28 26 3 29 3 0 11 79 108 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 13 82 111 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 65 - G - - MR 30 29 3 32 3 1 12 80 109 -8.424 -0.018 -6.742 -1.277 -2.323 1.602 -1.506 D 31 29 3 32 3 0 10 78 107 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 12 81 110 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 64 - G - - MR 33 32 3 35 3 1 11 79 108 -8.424 -0.018 -6.742 -1.739 -2.983 1.757 -2.370 D 34 32 3 35 3 0 10 78 107 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 11 80 109 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 63 - A - - MR 36 35 3 38 2 1 10 78 107 -8.445 -0.004 1.601 -2.040 -1.364 -1.578 D 37 35 3 38 2 0 9 77 106 -4.432 -0.068 IR 38 38 3 38 2 1 11 79 108 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 13 ] - - - - - - B 39 38 3 40 117 0 9 77 106 [ BEGL 14 ] - - - - - - S 40 39 1 41 4 0 0 50 79 -0.043 -6.874 -6.282 -6.922 [ MATP 15 ] 1 35 C G - - MP 41 40 1 45 6 2 2 50 79 -9.138 -9.078 -0.021 -7.854 -8.134 -8.529 -4.714 -4.635 -4.376 -0.852 -3.059 -4.766 3.599 -3.885 -4.431 -0.634 -4.674 -2.584 0.439 -4.772 -0.769 -3.265 ML 42 40 1 45 6 1 1 48 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 43 40 1 45 6 1 1 48 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 44 40 1 45 6 0 0 45 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 45 45 5 45 6 1 1 49 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 46 46 6 46 5 1 1 49 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 2 34 G C - - MP 47 46 6 51 6 2 2 48 77 -9.138 -9.078 -0.021 -7.854 -8.134 -8.529 -3.858 -2.624 -3.862 1.204 -4.518 -4.455 0.039 -4.247 -3.847 3.223 -4.242 0.531 -0.243 -3.832 -1.937 -2.774 ML 48 46 6 51 6 1 1 46 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 49 46 6 51 6 1 1 46 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 6 51 6 0 0 43 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 47 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 47 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 3 33 U A - - MP 53 52 6 57 6 2 2 46 75 -9.138 -9.078 -0.021 -7.854 -8.134 -8.529 -4.367 -4.196 -4.185 -0.479 -3.090 -4.733 1.242 -3.798 -4.188 -0.250 -4.553 -2.089 3.406 -4.511 -0.762 -2.994 ML 54 52 6 57 6 1 1 44 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 6 1 1 44 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 6 57 6 0 0 41 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 45 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 45 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 4 32 U A - - MP 59 58 6 63 6 2 2 44 73 -9.138 -9.078 -0.021 -7.854 -8.134 -8.529 -4.367 -4.196 -4.185 -0.479 -3.090 -4.733 1.242 -3.798 -4.188 -0.250 -4.553 -2.089 3.406 -4.511 -0.762 -2.994 ML 60 58 6 63 6 1 1 42 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 42 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 39 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 43 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 43 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 5 31 G C - - MP 65 64 6 69 6 2 2 42 71 -9.138 -5.218 -0.058 -7.854 -8.134 -8.529 -4.891 -3.165 -5.005 0.100 -5.442 -4.751 -0.770 -5.257 -4.424 3.672 -4.750 -0.870 -1.151 -4.565 -2.815 -3.879 ML 66 64 6 69 6 1 1 40 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 40 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 37 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 41 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 41 70 -1.937 -0.599 -6.303 -4.471 -5.577 0.000 0.000 0.000 0.000 [ MATP 20 ] 6 28 C G - - MP 71 70 6 75 6 2 2 40 69 -9.138 -9.078 -0.021 -7.854 -8.134 -8.529 -4.260 -4.278 -4.113 -0.607 -0.812 -4.641 3.496 -3.805 -4.161 -0.445 -4.497 -2.360 0.526 -4.410 -0.790 -3.059 ML 72 70 6 75 6 1 1 38 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 6 1 1 38 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 6 75 6 0 0 35 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 39 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 39 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 7 27 g c - - MP 77 76 6 81 6 2 2 38 67 -9.138 -9.078 -0.021 -7.854 -8.134 -8.529 -3.259 -0.813 -3.269 1.627 -3.772 -3.995 0.485 -3.702 -3.417 2.854 -3.830 0.338 0.230 -3.282 -1.386 -2.276 ML 78 76 6 81 6 1 1 36 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 6 1 1 36 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 80 76 6 81 6 0 0 33 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 81 81 5 81 6 1 1 37 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 1 37 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 8 26 G C - - MP 83 82 6 87 4 2 2 36 65 -1.973 -7.235 -0.477 -5.649 -3.927 -2.687 -3.940 1.511 -4.503 -4.515 0.049 -4.277 -3.878 3.243 -4.280 -0.319 -0.259 -3.919 -1.939 -2.838 ML 84 82 6 87 4 1 1 33 62 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 85 82 6 87 4 1 1 32 61 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 86 82 6 87 4 0 0 31 60 -4.568 -4.250 -2.265 -0.520 IL 87 87 5 87 4 1 1 36 65 -0.915 -1.546 -3.081 -6.818 0.000 0.000 0.000 0.000 IR 88 88 6 88 3 1 1 24 43 -2.086 -0.568 -3.473 0.000 0.000 0.000 0.000 [ MATL 23 ] 16 - a - - - ML 89 88 6 91 3 1 1 22 41 -7.988 -0.020 -6.642 0.821 -0.748 -0.135 -0.459 D 90 88 6 91 3 0 0 21 40 -6.591 -2.104 -0.402 IL 91 91 3 91 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 17 - c - - - ML 92 91 3 94 3 1 1 21 40 -7.988 -0.020 -6.642 -0.775 0.765 -1.573 0.465 D 93 91 3 94 3 0 0 20 39 -6.591 -1.048 -0.983 IL 94 94 3 94 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 18 - U - - - ML 95 94 3 97 3 1 1 20 39 -8.038 -0.020 -6.692 -0.812 0.049 -1.574 1.043 D 96 94 3 97 3 0 0 19 38 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 19 - U - - - ML 98 97 3 100 3 1 1 19 37 -8.038 -0.020 -6.692 -0.775 -1.140 -1.710 1.409 D 99 97 3 100 3 0 0 18 37 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 20 - G - - - ML 101 100 3 103 3 1 1 17 36 -8.038 -0.020 -6.692 -1.028 -2.464 1.611 -1.872 D 102 100 3 103 3 0 0 17 36 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 21 - C - - - ML 104 103 3 106 3 1 1 16 35 -8.038 -0.020 -6.692 -1.923 1.670 -2.751 -1.299 D 105 103 3 106 3 0 0 16 34 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 22 - U - - - ML 107 106 3 109 3 1 1 15 33 -8.038 -0.020 -6.692 -0.585 -0.583 -1.474 1.205 D 108 106 3 109 3 0 0 15 33 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 23 - a - - - ML 110 109 3 112 3 1 1 13 31 -8.038 -0.020 -6.692 0.695 0.214 -1.153 -0.375 D 111 109 3 112 3 0 0 13 32 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 24 - c - - - ML 113 112 3 115 2 1 1 1 1 * 0.000 -0.057 0.537 -0.765 -0.000 D 114 112 3 115 2 0 0 0 0 * 0.000 IL 115 115 3 115 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 32 ] - - - - - - E 116 115 3 -1 0 0 0 0 0 [ BEGR 33 ] - - - - - - S 117 39 1 118 3 0 0 42 61 -8.038 -0.020 -6.692 IL 118 118 2 118 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 36 - G - - - ML 119 118 2 121 3 1 1 42 61 -8.038 -0.020 -6.692 -1.739 -2.983 1.757 -2.370 D 120 118 2 121 3 0 0 40 60 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 37 - G - - - ML 122 121 3 124 3 1 1 41 60 -8.038 -0.020 -6.692 -1.739 -2.983 1.757 -2.370 D 123 121 3 124 3 0 0 39 59 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 38 - U - - - ML 125 124 3 127 3 1 1 40 59 -8.038 -0.020 -6.692 -1.624 -1.596 -2.364 1.656 D 126 124 3 127 3 0 0 38 58 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 39 - G - - - ML 128 127 3 130 3 1 1 38 58 -8.038 -0.020 -6.692 -1.739 -2.983 1.757 -2.370 D 129 127 3 130 3 0 0 37 56 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - A - - - ML 131 130 3 133 3 1 1 37 56 -8.038 -0.020 -6.692 1.749 -2.522 -2.139 -2.079 D 132 130 3 133 3 0 0 36 55 -6.174 -1.687 -0.566 IL 133 133 3 133 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - G - - - ML 134 133 3 136 5 1 1 36 55 -7.158 -0.037 -6.974 -7.186 -8.078 -1.233 -2.260 1.582 -1.423 D 135 133 3 136 5 0 0 35 54 -4.959 -0.803 -4.221 -2.596 -2.508 IL 136 136 3 136 5 1 1 37 56 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 42 62 g c - - MP 137 136 3 141 6 2 2 35 54 -9.138 -9.078 -0.021 -7.854 -8.134 -8.529 -2.938 -2.482 -3.010 1.690 -2.855 -3.820 1.882 -3.176 -3.075 1.996 -3.564 0.078 1.032 -3.112 -0.571 -1.996 ML 138 136 3 141 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 3 141 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 3 141 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 43 61 C G - - MP 143 142 6 147 6 2 2 33 52 -9.138 -9.078 -0.021 -7.854 -8.134 -8.529 -3.984 -3.920 -3.782 -0.137 -2.598 -4.282 3.160 -3.351 -3.800 0.103 -4.145 -1.883 1.639 -4.083 -0.266 -2.646 ML 144 142 6 147 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 29 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 44 60 C G - - MP 149 148 6 153 6 2 2 31 50 -9.138 -9.078 -0.021 -7.854 -8.134 -8.529 -3.812 -3.583 -3.710 0.174 -2.734 -4.332 3.135 -3.400 -3.708 1.025 -4.108 -1.437 1.022 -3.968 -0.390 -2.567 ML 150 148 6 153 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 45 59 G C - - MP 155 154 6 159 6 2 2 29 48 -9.138 -9.078 -0.021 -7.854 -8.134 -8.529 -4.386 -2.901 -4.438 0.499 -5.115 -4.635 -0.463 -4.799 -4.170 3.509 -4.531 0.161 -0.757 -4.221 -2.474 -3.331 ML 156 154 6 159 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 6 1 1 28 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 158 154 6 159 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 159 159 5 159 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 160 160 6 160 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 46 58 G C - - MP 161 160 6 165 4 2 2 27 46 -7.028 -7.235 -0.050 -5.649 -4.891 -3.165 -5.005 0.100 -5.442 -4.751 -0.770 -5.257 -4.424 3.672 -4.750 -0.870 -1.151 -4.565 -2.815 -3.879 ML 162 160 6 165 4 1 1 28 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 163 160 6 165 4 1 1 28 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 164 160 6 165 4 0 0 27 46 -4.568 -4.250 -2.265 -0.520 IL 165 165 5 165 4 1 1 29 49 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 166 166 6 166 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - C - - - ML 167 166 6 169 3 1 1 25 43 -8.038 -0.020 -6.692 -1.923 1.670 -2.751 -1.299 D 168 166 6 169 3 0 0 24 43 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 48 - A - - - ML 170 169 3 172 3 1 1 23 42 -8.038 -0.020 -6.692 1.749 -2.522 -2.139 -2.079 D 171 169 3 172 3 0 0 22 41 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 49 - c - - - ML 173 172 3 175 3 1 1 22 41 -8.038 -0.020 -6.692 -0.841 0.847 -1.648 0.405 D 174 172 3 175 3 0 0 21 40 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 50 - A - - - ML 176 175 3 178 3 1 1 21 40 -8.038 -0.020 -6.692 1.749 -2.522 -2.139 -2.079 D 177 175 3 178 3 0 0 20 39 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 51 - G - - - ML 179 178 3 181 3 1 1 20 39 -8.038 -0.020 -6.692 -1.739 -2.983 1.757 -2.370 D 180 178 3 181 3 0 0 19 38 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 52 - C - - - ML 182 181 3 184 3 1 1 19 37 -8.038 -0.020 -6.692 -0.945 1.258 -1.218 -0.601 D 183 181 3 184 3 0 0 18 37 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 53 - A - - - ML 185 184 3 187 3 1 1 17 36 -8.038 -0.020 -6.692 1.749 -2.522 -2.139 -2.079 D 186 184 3 187 3 0 0 17 36 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 54 - U - - - ML 188 187 3 190 3 1 1 16 35 -8.038 -0.020 -6.692 -0.934 -1.101 -1.377 1.393 D 189 187 3 190 3 0 0 16 34 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 55 - A - - - ML 191 190 3 193 3 1 1 15 33 -8.038 -0.020 -6.692 1.749 -2.522 -2.139 -2.079 D 192 190 3 193 3 0 0 15 33 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 56 - A - - - ML 194 193 3 196 3 1 1 13 31 -8.038 -0.020 -6.692 1.021 -0.538 -1.122 -0.281 D 195 193 3 196 3 0 0 13 32 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 57 - A - - - ML 197 196 3 199 2 1 1 1 1 * 0.000 1.457 -1.773 -0.861 -1.279 D 198 196 3 199 2 0 0 0 0 * 0.000 IL 199 199 3 199 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 56 ] - - - - - - E 200 199 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME D12-methyl ACC RF02950 DESC D12-methyl RNA LENG 64 MAXL 146 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 12 14:15:11 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02950/CM NSEQ 19 EFFN 2.889893 CKSUM 2354132048 STATS LOCAL MSV -8.0382 0.71908 STATS LOCAL VITERBI -8.8673 0.71908 STATS LOCAL FORWARD -3.7392 0.71908 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.45595 1.40943 1.07494 1.70805 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 0.00000 * 1 3.47078 0.18416 3.26685 2.31285 1 C - - < 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 2 1.83823 2.78223 0.34580 2.64026 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 3 3.26622 2.12574 3.04509 0.22952 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 4 3.26361 2.12553 3.04383 0.22975 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 5 2.74587 3.48787 0.13616 3.42541 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 6 3.23264 0.21736 3.05046 2.22039 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 7 1.38065 2.42568 0.58567 2.26879 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 8 1.61025 2.80739 0.39858 2.68051 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.30675 1.39752 4.07703 1.05569 0.42764 1.09861 0.40547 9 0.77752 1.93858 1.46640 1.79701 16 a - - _ 1.38629 1.38629 1.38629 1.38629 0.07728 4.07703 2.85747 1.46634 0.26236 1.09861 0.40547 10 2.07994 0.77685 2.65395 1.06469 17 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03599 4.03574 4.03574 1.46634 0.26236 0.46419 0.99060 11 2.11110 1.33005 2.65105 0.60907 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 12 2.07596 2.35425 2.78868 0.33115 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 13 2.29837 3.39865 0.20285 3.00066 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 14 3.14639 0.14984 3.71982 2.63231 21 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 15 1.90700 1.85358 2.56631 0.48130 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 16 0.86153 1.18573 2.31147 1.75535 23 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 17 1.46297 0.94830 1.95409 1.42980 24 c - - _ 1.38629 1.38629 1.38629 1.38629 0.36330 1.24596 4.07703 0.11400 2.22806 1.09861 0.40547 18 2.91090 0.45601 2.62183 1.43089 26 C - - > 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 19 2.51352 0.66118 2.23167 1.21934 27 C - - > 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 20 2.14725 3.20762 0.23148 3.00813 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.10909 2.44881 4.07703 0.83213 0.57115 1.09861 0.40547 21 3.61081 0.16269 3.32602 2.43977 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 22 0.26096 3.23010 1.96171 3.00539 32 A - - > 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 23 0.26107 3.22938 1.96161 3.00456 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 24 2.87069 0.47570 2.59052 1.39873 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 25 2.58164 3.41358 0.16162 3.20238 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 26 2.95086 3.86060 0.11161 3.43391 36 G - - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 27 2.95086 3.86060 0.11161 3.43391 37 G - - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 28 2.84523 2.76978 3.37105 0.16860 38 U - - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 29 2.95086 3.86060 0.11161 3.43391 39 G - - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 30 0.11868 3.48739 3.18782 3.21713 40 A - - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 31 2.50393 3.23822 0.21866 2.58489 41 G - - - 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 32 1.43184 1.36788 1.12299 1.70827 42 g - - < 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 33 2.83177 0.48554 2.59473 1.38206 43 C - - < 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 34 2.59903 0.49716 1.91659 1.77023 44 C - - < 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 35 2.42413 3.20636 0.19235 3.08079 45 G - - < 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 36 2.74586 3.48785 0.13616 3.42538 46 G - - < 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 37 3.14639 0.14984 3.71982 2.63231 47 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 38 0.11868 3.48739 3.18782 3.21713 48 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 39 2.13810 0.71801 2.72029 1.11308 49 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 40 0.11868 3.48739 3.18782 3.21713 50 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 41 2.95086 3.86060 0.11161 3.43391 51 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 42 2.29844 0.39852 2.36484 2.00761 52 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 43 0.11868 3.48739 3.18782 3.21713 53 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 44 2.24260 2.32685 2.49041 0.33780 54 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 45 0.11868 3.48739 3.18782 3.21713 55 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 46 0.61999 1.77825 2.28322 1.65463 56 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 47 0.31499 2.82306 2.04565 2.50735 57 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 48 3.61313 0.16253 3.32710 2.44021 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 49 3.29446 0.27188 3.02917 1.87988 59 C - - > 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 50 2.02566 2.03427 0.44311 2.35092 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 51 1.55720 2.75785 0.42995 2.58623 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 52 1.93783 1.31834 1.24693 1.20058 62 u - - > 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 53 0.21671 3.04769 2.47432 2.76223 63 A - - : 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 54 2.95086 3.86060 0.11161 3.43391 64 G - - : 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 55 2.54205 3.29020 0.20616 2.65436 65 G - - : 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 56 2.95086 3.86060 0.11161 3.43391 66 G - - : 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 57 2.17423 0.38880 2.93165 1.86353 67 C - - : 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 58 2.95086 3.86060 0.11161 3.43391 68 G - - : 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 59 2.95086 3.86060 0.11161 3.43391 69 G - - : 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 60 2.95086 3.86060 0.11161 3.43391 70 G - - : 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 61 0.32441 2.63344 2.60347 2.03102 71 A - - : 1.38629 1.38629 1.38629 1.38629 0.10909 4.07703 2.44881 1.46634 0.26236 1.09861 0.40547 62 0.37210 2.51731 2.49333 1.91459 72 A - - : 1.38629 1.38629 1.38629 1.38629 0.03713 4.00507 4.00507 1.46634 0.26236 0.33114 1.26621 63 2.37385 0.44820 2.96981 1.52883 73 C - - : 1.38629 1.38629 1.38629 1.38629 0.03450 4.07703 4.07703 1.46634 0.26236 1.09861 0.40547 64 2.95086 3.86060 0.11161 3.43391 74 G - - : 1.38629 1.38629 1.38629 1.38629 0.01740 4.05993 * 1.46634 0.26236 0.00000 * //