INFERNAL1/a [1.1.4 | Dec 2020] NAME cow-rumen-4 ACC RF02948 DESC cow-rumen-4 RNA STATES 201 NODES 52 CLEN 64 W 88 ALPH RNA RF no CONS yes MAP yes DATE Mon Oct 1 23:08:39 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 8 EFFN 4.644531 CKSUM 1772717384 NULL 0.000 0.000 0.000 0.000 GA 48.50 TC 48.50 NC 38.70 EFP7GF -9.7528 0.72292 ECMLC 0.55035 -9.92638 2.18752 1600000 943168 0.001272 ECMGC 0.42464 -13.83296 -0.29481 1600000 125537 0.003186 ECMLI 0.52050 -7.85552 4.40627 1600000 709503 0.001691 ECMGI 0.43554 -10.33413 1.98023 1600000 85384 0.004685 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 88 119 -7.773 -7.980 -0.030 -6.394 IL 1 1 2 1 4 1 21 91 122 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 21 90 121 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 2 1 19 88 119 -9.252 -0.002 0.681 -1.436 0.339 -0.392 D 4 2 3 5 2 0 18 87 118 -8.445 -0.004 IL 5 5 3 5 2 1 20 89 120 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 2 ] - - - - - - B 6 5 3 7 105 0 18 87 118 [ BEGL 3 ] - - - - - - S 7 6 1 8 4 0 1 46 65 -0.032 -7.308 -6.715 -7.355 [ MATP 4 ] 2 33 u a - - MP 8 7 1 12 6 2 4 46 65 -9.480 -9.419 -0.016 -8.195 -8.475 -8.870 -4.141 -4.166 -4.041 -0.466 0.409 -4.625 1.981 -3.711 -4.051 -0.340 -4.453 -2.229 2.965 -4.305 -0.697 -2.948 ML 9 7 1 12 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 10 7 1 12 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 11 7 1 12 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 12 12 5 12 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 13 13 6 13 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 32 A U - - MP 14 13 6 18 6 2 3 44 63 -9.480 -9.419 -0.076 -8.195 -4.553 -8.870 -4.345 -3.128 -4.436 3.319 -5.498 -6.064 -1.005 -4.599 -4.231 1.912 -4.799 -0.536 -1.236 -5.043 -2.940 -3.177 ML 15 13 6 18 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 16 13 6 18 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 17 13 6 18 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 18 18 5 18 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 19 19 6 19 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 31 g c - - MP 20 19 6 24 6 2 3 42 61 -9.421 -9.360 -0.017 -8.137 -8.417 -8.812 -3.655 -3.187 -3.642 0.532 -3.087 -4.367 2.130 -3.586 -3.699 2.360 -4.147 -0.985 1.591 -3.748 -0.682 -2.518 ML 21 19 6 24 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 22 19 6 24 6 1 1 40 59 -7.661 -6.390 -2.299 -6.368 -0.462 -4.582 1.173 -1.065 -0.810 -0.520 D 23 19 6 24 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 24 24 5 24 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 25 25 6 25 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 30 A U - - MP 26 25 6 30 4 2 2 40 59 -7.528 -8.774 -0.544 -1.706 -3.912 -3.260 -3.941 3.064 -3.663 -4.931 0.620 -3.910 -3.877 0.658 -4.376 -0.890 1.520 -4.298 -1.352 -2.816 ML 27 25 6 30 4 1 1 39 58 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 28 25 6 30 4 1 1 39 58 -5.322 -13.749 -0.155 -3.705 1.173 -1.065 -0.810 -0.520 D 29 25 6 30 4 0 0 37 56 -12.737 -14.007 -2.036 -0.404 IL 30 30 5 30 4 1 1 39 58 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 31 31 6 31 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 29 - C - - MR 32 31 6 34 5 1 1 38 57 -7.396 -0.032 -7.212 -7.424 -8.316 -1.317 1.253 -2.176 -0.010 D 33 31 6 34 5 0 0 37 56 -6.916 -0.203 -4.542 -5.973 -3.967 IR 34 34 3 34 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 28 a u - - MP 35 34 3 39 4 2 2 37 56 -7.773 -7.980 -0.245 -2.762 -4.164 -2.964 -4.222 2.496 -5.289 -5.520 -0.786 -4.501 -4.133 2.050 -4.647 2.134 -0.988 -4.604 -2.707 -3.028 ML 36 34 3 39 4 1 1 38 57 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 37 34 3 39 4 1 1 37 56 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 38 34 3 39 4 0 0 36 56 -4.568 -4.250 -2.265 -0.520 IL 39 39 5 39 4 1 1 39 58 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 40 40 6 40 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 7 - A - - - ML 41 40 6 43 5 1 1 34 53 -7.610 -0.027 -7.425 -7.637 -8.529 1.183 -1.399 -1.510 -0.000 D 42 40 6 43 5 0 0 33 52 -6.070 -0.318 -5.332 -3.706 -3.619 IL 43 43 3 43 5 1 1 35 54 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 27 a u - - MP 44 43 3 48 6 2 2 33 52 -9.480 -9.419 -0.095 -8.195 -8.475 -4.190 -3.791 -2.948 -3.828 2.911 -4.036 -4.812 0.309 -4.030 -3.848 1.862 -4.337 -0.573 0.890 -4.043 -1.650 -2.729 ML 45 43 3 48 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 46 43 3 48 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 47 43 3 48 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 48 48 5 48 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 49 49 6 49 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 26 g c - - MP 50 49 6 54 6 2 2 31 50 -9.402 -9.341 -0.017 -8.117 -8.397 -8.792 0.118 -2.501 -3.066 0.935 -3.177 -3.832 0.846 -3.401 -3.208 2.682 -3.675 -0.425 1.286 -3.122 -0.980 -2.141 ML 51 49 6 54 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 52 49 6 54 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 53 49 6 54 6 0 0 29 48 -10.156 -8.854 -0.797 -5.333 -5.351 -1.426 IL 54 54 5 54 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 55 55 6 55 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 25 g c - - MP 56 55 6 60 6 2 2 29 48 -9.480 -9.419 -0.016 -8.195 -8.475 -8.870 0.256 -2.530 -3.358 1.732 -3.839 -4.153 0.210 -3.788 -3.502 2.558 -3.941 1.140 -0.011 -3.417 -1.575 -2.398 ML 57 55 6 60 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 58 55 6 60 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 59 55 6 60 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 60 60 5 60 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 61 61 6 61 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 24 g c - - MP 62 61 6 66 6 2 2 27 46 -9.480 -9.419 -0.016 -8.195 -8.475 -8.870 -3.049 -2.711 -3.124 1.642 -2.936 -3.912 1.236 -3.308 -3.216 2.140 -3.709 -0.678 1.537 -3.209 0.469 -2.150 ML 63 61 6 66 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 64 61 6 66 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 65 61 6 66 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 66 66 5 66 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 23 g c - - MP 68 67 6 72 6 2 2 25 44 -9.480 -9.419 -0.016 -8.195 -8.475 -8.870 -3.786 -2.737 -3.736 2.302 -4.248 -4.497 0.274 -4.144 -3.932 2.690 -4.322 -0.394 0.624 -3.754 -1.699 -2.680 ML 69 67 6 72 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 71 67 6 72 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 72 72 5 72 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 73 73 6 73 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 22 G C - - MP 74 73 6 78 4 2 2 23 42 -7.773 -7.980 -0.030 -6.394 -6.209 -3.822 -6.627 -0.856 -7.238 -5.234 -2.243 -6.849 -5.171 3.854 -5.431 -1.610 -2.604 -5.391 -4.390 -5.485 ML 75 73 6 78 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 76 73 6 78 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 77 73 6 78 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 78 78 5 78 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 79 79 6 79 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 14 - G - - - ML 80 79 6 82 3 1 1 21 39 -8.743 -0.012 -7.397 -0.810 -2.982 1.642 -2.458 D 81 79 6 82 3 0 0 20 39 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 15 - U - - - ML 83 82 3 85 3 1 1 19 38 -8.743 -0.012 -7.397 0.221 -1.353 -1.667 1.090 D 84 82 3 85 3 0 0 19 38 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - A - - - ML 86 85 3 88 3 1 1 18 37 -8.743 -0.012 -7.397 1.613 -2.153 -2.182 -1.010 D 87 85 3 88 3 0 0 18 37 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - A - - - ML 89 88 3 91 3 1 1 17 35 -8.743 -0.012 -7.397 1.513 -1.932 -1.998 -0.660 D 90 88 3 91 3 0 0 17 35 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - G - - - ML 92 91 3 94 3 1 1 16 34 -8.743 -0.012 -7.397 -3.078 -4.474 1.913 -3.819 D 93 91 3 94 3 0 0 16 34 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - G - - - ML 95 94 3 97 3 1 1 14 33 -8.743 -0.012 -7.397 -3.078 -4.474 1.913 -3.819 D 96 94 3 97 3 0 0 15 33 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - A - - - ML 98 97 3 100 3 1 1 13 31 -8.743 -0.012 -7.397 1.909 -3.899 -3.398 -3.590 D 99 97 3 100 3 0 0 13 32 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - A - - - ML 101 100 3 103 2 1 1 1 1 * 0.000 1.909 -3.899 -3.398 -3.590 D 102 100 3 103 2 0 0 0 0 * 0.000 IL 103 103 3 103 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 25 ] - - - - - - E 104 103 3 -1 0 0 0 0 0 [ BEGR 26 ] - - - - - - S 105 6 1 106 3 0 0 56 86 -8.743 -0.133 -3.544 IL 106 106 2 106 3 1 1 58 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 34 - A - - - ML 107 106 2 109 3 1 1 56 87 -8.623 -0.013 -7.277 1.089 -0.728 -1.428 -0.156 D 108 106 2 109 3 0 0 54 85 -7.354 -0.523 -1.746 IL 109 109 3 109 3 1 1 57 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 35 - A - - - ML 110 109 3 112 3 1 1 55 86 -8.743 -0.012 -7.397 1.636 -2.216 -2.234 -1.110 D 111 109 3 112 3 0 0 53 83 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 56 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 36 - U - - - ML 113 112 3 115 3 1 1 54 85 -8.743 -0.214 -2.880 -0.323 -1.530 -1.994 1.380 D 114 112 3 115 3 0 0 51 82 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 55 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 37 - A - - - ML 116 115 3 118 3 1 1 53 84 -8.543 -0.142 -3.462 1.398 -0.666 -1.735 -1.206 D 117 115 3 118 3 0 0 49 79 -7.788 -3.301 -0.162 IL 118 118 3 118 3 1 1 54 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 38 - u - - - ML 119 118 3 121 3 1 1 52 83 -1.956 -0.445 -7.070 0.410 -1.085 -1.348 0.854 D 120 118 3 121 3 0 0 44 75 -8.251 -0.257 -2.643 IL 121 121 3 121 3 1 1 53 84 -0.864 -1.208 -5.820 0.000 0.000 0.000 0.000 [ MATL 32 ] 43 - A - - - ML 122 121 3 124 3 1 1 40 59 -8.743 -0.012 -7.397 1.265 -1.585 -1.699 -0.067 D 123 121 3 124 3 0 0 39 58 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 44 - U - - - ML 125 124 3 127 3 1 1 39 58 -8.743 -0.012 -7.397 0.002 -1.417 -1.790 1.224 D 126 124 3 127 3 0 0 38 57 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 45 - U - - - ML 128 127 3 130 3 1 1 38 56 -8.743 -0.012 -7.397 -0.493 -1.592 -2.103 1.446 D 129 127 3 130 3 0 0 37 56 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 46 - U - - - ML 131 130 3 133 5 1 1 37 55 -7.794 -0.024 -7.609 -7.821 -8.713 -0.493 -1.592 -2.103 1.446 D 132 130 3 133 5 0 0 35 54 -4.959 -0.803 -4.221 -2.596 -2.508 IL 133 133 3 133 5 1 1 37 56 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 47 69 u a - - MP 134 133 3 138 6 2 2 36 54 -9.480 -9.419 -0.016 -8.195 -8.475 -8.870 0.040 -2.491 -2.525 0.643 -2.314 -3.360 1.343 -2.739 -2.571 0.625 -3.124 -0.937 2.551 -2.682 -0.358 -0.103 ML 135 133 3 138 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 3 138 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 3 138 6 0 0 32 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 48 68 c g - - MP 140 139 6 144 6 2 2 34 52 -9.480 -9.419 -0.016 -8.195 -8.475 -8.870 -3.549 -3.325 -3.599 0.995 -2.875 -4.405 2.634 -3.433 -3.571 1.481 -4.078 -1.162 1.534 -3.751 -0.482 -2.430 ML 141 139 6 144 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 30 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 49 67 a u - - MP 146 145 6 150 6 2 2 32 50 -9.480 -4.208 -0.095 -8.195 -8.475 -8.870 -3.505 -3.352 -3.545 2.368 -2.907 -4.307 1.947 -3.455 -3.556 0.622 -4.043 -1.322 1.784 -3.724 -0.617 -2.485 ML 147 145 6 150 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 28 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 31 49 -2.900 -0.335 -6.411 -4.579 -5.685 0.000 0.000 0.000 0.000 [ MATP 39 ] 50 65 u a - - MP 152 151 6 156 6 2 2 29 48 -9.480 -9.419 -0.016 -8.195 -8.475 -8.870 -3.358 -2.917 -3.426 1.930 -3.188 -4.276 1.097 -3.530 -3.464 1.832 -3.966 -0.747 2.121 -3.566 -0.884 -2.380 ML 153 151 6 156 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 51 64 A U - - MP 158 157 6 162 6 2 2 27 46 -9.480 -9.419 -0.123 -8.195 -8.475 -3.778 -4.027 -3.389 -4.054 3.058 -3.730 -5.043 0.560 -3.998 -3.981 0.492 -4.480 -1.015 1.700 -4.424 -1.418 -2.921 ML 159 157 6 162 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 52 63 g c - - MP 164 163 6 168 6 2 2 25 44 -9.374 -9.313 -0.018 -8.089 -8.369 -8.764 -3.480 -2.697 -3.480 2.240 -3.590 -4.263 1.374 -3.746 -3.614 2.377 -4.050 -0.429 0.435 -3.543 -1.185 -2.436 ML 165 163 6 168 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 6 168 6 0 0 23 42 -10.400 -9.098 -4.895 -5.577 -5.595 -0.117 IL 168 168 5 168 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 53 62 C G - - MP 170 169 6 174 4 2 2 23 42 -7.562 -7.769 -0.035 -6.184 -5.839 -5.853 -5.294 -2.022 -3.791 -5.534 3.811 -4.734 -5.419 -1.910 -5.508 -3.856 -0.447 -5.818 -1.562 -4.228 ML 171 169 6 174 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 173 169 6 174 4 0 0 22 41 -5.861 -5.542 -0.564 -1.813 IL 174 174 5 174 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 175 175 6 175 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 54 - A - - - ML 176 175 6 178 3 1 1 21 39 -8.743 -0.012 -7.397 1.520 -2.444 -0.510 -2.022 D 177 175 6 178 3 0 0 20 39 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 55 - U - - - ML 179 178 3 181 3 1 1 19 38 -8.743 -0.012 -7.397 -2.949 -2.710 -3.727 1.865 D 180 178 3 181 3 0 0 19 38 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 56 - A - - - ML 182 181 3 184 3 1 1 18 37 -8.743 -0.012 -7.397 1.909 -3.899 -3.398 -3.590 D 183 181 3 184 3 0 0 18 37 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 57 - A - - - ML 185 184 3 187 3 1 1 17 35 -8.743 -0.012 -7.397 1.462 -2.391 -0.331 -1.948 D 186 184 3 187 3 0 0 17 35 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 58 - G - - - ML 188 187 3 190 3 1 1 16 34 -8.743 -0.012 -7.397 -3.078 -4.474 1.913 -3.819 D 189 187 3 190 3 0 0 16 34 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 59 - G - - - ML 191 190 3 193 3 1 1 14 33 -8.743 -0.012 -7.397 -3.078 -4.474 1.913 -3.819 D 192 190 3 193 3 0 0 15 33 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 60 - A - - - ML 194 193 3 196 3 1 1 13 31 -8.743 -0.012 -7.397 1.909 -3.899 -3.398 -3.590 D 195 193 3 196 3 0 0 13 32 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 61 - G - - - ML 197 196 3 199 2 1 1 1 1 * 0.000 -0.452 -2.763 1.541 -2.241 D 198 196 3 199 2 0 0 0 0 * 0.000 IL 199 199 3 199 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 51 ] - - - - - - E 200 199 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME cow-rumen-4 ACC RF02948 DESC cow-rumen-4 RNA LENG 64 MAXL 137 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Oct 1 23:08:39 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 8 EFFN 7.277344 CKSUM 1772717384 STATS LOCAL MSV -7.9201 0.72292 STATS LOCAL VITERBI -8.9647 0.72292 STATS LOCAL FORWARD -3.4666 0.72292 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.08194 1.87760 1.39104 1.34981 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 0.00000 * 1 0.87393 2.61772 1.08990 1.75174 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 2 3.47502 1.10334 3.28023 0.51139 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 3 0.34125 3.97256 1.40367 3.70495 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.10522 4.62497 2.40720 1.46634 0.26236 1.09861 0.40547 4 2.46047 1.20444 0.97782 1.43291 4 g - - < 1.38629 1.38629 1.38629 1.38629 0.02155 4.54131 4.54131 1.46634 0.26236 2.41474 0.09364 5 0.43807 2.75878 2.47374 1.57465 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.02155 4.54131 4.54131 1.46634 0.26236 0.19697 1.72159 6 0.92399 3.70382 0.60442 3.44051 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.17713 4.62497 1.88040 1.46634 0.26236 1.09861 0.40547 7 0.48295 2.62661 2.71526 1.40843 7 A - - - 1.38629 1.38629 1.38629 1.38629 0.02314 4.47098 4.47098 1.46634 0.26236 0.12094 2.17236 8 0.53974 2.97011 1.44573 2.03845 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.13446 4.62497 2.15411 1.46634 0.26236 1.09861 0.40547 9 1.57178 2.36350 0.68082 1.65010 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.02218 4.51270 4.51270 1.46634 0.26236 0.15617 1.93388 10 1.10249 2.91156 0.60093 2.72933 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 11 1.46083 1.99446 1.09300 1.21517 11 g - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 12 1.00955 2.78802 0.78052 2.15500 12 g - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 13 3.52905 4.52730 0.05278 4.48585 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 14 2.04001 3.85209 0.19996 3.50736 14 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 15 1.22389 2.63078 2.85625 0.55094 15 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 16 0.20724 3.23704 3.29790 2.19881 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 17 0.26858 3.07226 3.15121 1.92128 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 18 4.02207 5.04241 0.03576 4.53278 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 19 4.02207 5.04241 0.03576 4.53278 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 20 0.03531 4.66167 4.28636 4.46636 20 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 21 0.03531 4.66167 4.28636 4.46636 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 22 4.54728 0.06534 4.40048 3.20928 22 C - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 23 2.29685 0.85401 2.59836 0.91798 23 c - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 24 1.59583 1.17598 1.48508 1.33842 24 c - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 25 1.91634 0.93570 2.70860 0.93162 25 u - - > 1.38629 1.38629 1.38629 1.38629 0.13446 4.62497 2.15411 1.46634 0.26236 1.09861 0.40547 26 1.35958 0.74703 2.17475 1.85903 26 c - - > 1.38629 1.38629 1.38629 1.38629 0.02218 4.51270 4.51270 1.46634 0.26236 0.15617 1.93388 27 2.12034 1.57205 2.76851 0.49490 27 U - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 28 3.69719 1.44927 3.53516 0.34064 28 U - - > 1.38629 1.38629 1.38629 1.38629 0.36614 4.62497 1.21472 1.46634 0.26236 1.09861 0.40547 29 2.66773 0.41130 3.30211 1.46536 29 C - - - 1.38629 1.38629 1.38629 1.38629 0.02789 4.28671 4.28671 1.46634 0.26236 0.06397 2.78108 30 1.53936 2.75927 2.57052 0.43750 30 U - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 31 1.46046 1.07216 1.15482 2.20284 31 c - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 32 3.88070 1.52671 3.73934 0.30335 32 U - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 33 0.39627 3.43001 1.36746 3.21805 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.11348 4.62497 2.32821 1.46634 0.26236 1.09861 0.40547 34 0.55288 1.95605 2.61356 1.56054 34 A - - - 1.38629 1.38629 1.38629 1.38629 0.02173 4.53322 4.53322 1.46634 0.26236 0.18329 1.78691 35 0.19293 3.28428 3.33847 2.27787 35 A - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 36 1.66555 2.80033 3.15843 0.34583 36 U - - - 1.38629 1.38629 1.38629 1.38629 0.17713 4.62497 1.88040 1.46634 0.26236 1.09861 0.40547 37 0.33366 1.85231 2.94499 2.60067 37 A - - - 1.38629 1.38629 1.38629 1.38629 0.12386 4.47098 2.25320 1.46634 0.26236 2.86551 0.05864 38 1.07231 2.35820 2.53618 0.72562 38 u - - - 1.38629 1.38629 1.38629 1.38629 0.37466 1.20444 4.37267 1.01491 0.45010 0.08087 2.55509 39 0.42970 2.80200 2.89671 1.45500 43 A - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 40 1.40187 2.69632 2.97418 0.45362 44 U - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 41 1.80401 2.85218 3.25053 0.30261 45 U - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 42 1.80401 2.85218 3.25053 0.30261 46 U - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 43 1.76530 2.00386 2.40548 0.50447 47 U - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 44 2.00492 0.82443 1.60880 1.48405 48 c - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 45 0.91302 1.39676 2.46535 1.32308 49 a - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 46 1.24358 2.21369 1.36891 1.05564 50 u - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 47 0.45680 2.83591 2.60189 1.45288 51 A - - < 1.38629 1.38629 1.38629 1.38629 0.17713 4.62497 1.88040 1.46634 0.26236 1.09861 0.40547 48 1.02559 1.80600 0.97134 2.31740 52 g - - < 1.38629 1.38629 1.38629 1.38629 0.02314 4.47098 4.47098 1.46634 0.26236 2.86551 0.05864 49 4.41511 0.06899 4.34506 3.17975 53 C - - < 1.38629 1.38629 1.38629 1.38629 0.02314 4.47098 4.47098 1.46634 0.26236 0.12094 2.17236 50 0.27758 3.54931 1.72720 3.32807 54 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 51 3.99081 3.75884 4.53995 0.05390 55 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 52 0.03531 4.66167 4.28636 4.46636 56 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 53 0.31535 3.52479 1.59112 3.28844 57 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 54 4.02207 5.04241 0.03576 4.53278 58 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 55 4.02207 5.04241 0.03576 4.53278 59 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 56 0.03531 4.66167 4.28636 4.46636 60 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 57 1.75778 3.69438 0.26407 3.35836 61 G - - _ 1.38629 1.38629 1.38629 1.38629 0.17713 4.62497 1.88040 1.46634 0.26236 1.09861 0.40547 58 3.44503 4.49200 0.05952 4.22105 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.02314 4.47098 4.47098 1.46634 0.26236 2.86551 0.05864 59 2.55884 1.06117 1.70176 0.93091 63 u - - > 1.38629 1.38629 1.38629 1.38629 0.02314 4.47098 4.47098 1.46634 0.26236 0.12094 2.17236 60 1.50406 2.90710 2.66049 0.42583 64 U - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 61 1.12426 1.47366 2.04046 1.15185 65 a - - > 1.38629 1.38629 1.38629 1.38629 0.13446 2.15411 4.62497 0.16121 1.90454 1.09861 0.40547 62 1.43537 2.64061 1.30018 0.87187 67 u - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 63 1.65274 1.70822 0.75645 1.84540 68 g - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 64 0.51525 2.58987 1.82408 1.79424 69 A - - > 1.38629 1.38629 1.38629 1.38629 0.00995 4.61512 * 1.46634 0.26236 0.00000 * //