INFERNAL1/a [1.1.4 | Dec 2020] NAME cow-rumen-1 ACC RF02946 DESC cow-rumen-1 RNA STATES 187 NODES 51 CLEN 61 W 108 ALPH RNA RF no CONS yes MAP yes DATE Mon Oct 1 23:58:50 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 50 EFFN 3.927612 CKSUM 3695967789 NULL 0.000 0.000 0.000 0.000 GA 53.40 TC 53.40 NC 37.90 EFP7GF -11.5525 0.71905 ECMLC 0.71457 -6.19711 2.16093 1600000 470919 0.002548 ECMGC 0.43762 -17.91064 -4.65828 1600000 132060 0.003029 ECMLI 0.67235 -5.04147 3.32954 1600000 333806 0.003595 ECMGI 0.45419 -13.72550 -1.84706 1600000 88123 0.004539 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 108 167 -7.596 -7.803 -0.034 -6.218 IL 1 1 2 1 4 1 20 110 170 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 20 110 169 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 1 19 108 168 -8.575 -0.013 -7.229 0.126 -0.597 -0.922 0.782 D 4 2 3 5 3 0 15 106 165 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 19 109 168 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 19 107 167 -8.575 -0.013 -7.229 -1.534 1.463 -1.715 -0.755 D 7 5 3 8 3 0 15 105 165 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 18 108 167 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 18 106 166 -8.932 -0.012 -7.250 1.886 -3.588 -3.109 -3.253 D 10 8 3 11 3 0 14 105 164 -5.620 -0.734 -1.403 IL 11 11 3 11 3 1 17 107 166 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 82 - G - - MR 12 11 3 14 3 1 17 105 165 -8.932 -0.012 -7.250 -2.792 -4.160 1.893 -3.526 D 13 11 3 14 3 0 12 103 162 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 16 106 165 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 81 - G - - MR 15 14 3 17 3 1 16 104 164 -8.932 -0.012 -7.250 -2.792 -4.160 1.893 -3.526 D 16 14 3 17 3 0 12 102 161 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 15 105 164 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 80 - A - - MR 18 17 3 20 3 1 15 103 163 -4.134 -0.095 -7.250 1.886 -3.588 -3.109 -3.253 D 19 17 3 20 3 0 11 101 160 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 15 103 163 -2.267 -0.418 -4.506 0.000 0.000 0.000 0.000 [ MATR 7 ] - 78 - G - - MR 21 20 3 23 3 1 14 102 162 -8.932 -0.012 -7.250 -0.556 -2.650 1.551 -2.113 D 22 20 3 23 3 0 10 100 159 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 14 103 162 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 77 - A - - MR 24 23 3 26 3 1 13 101 161 -8.932 -0.012 -7.250 1.886 -3.588 -3.109 -3.253 D 25 23 3 26 3 0 10 99 158 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 13 102 161 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 76 - A - - MR 27 26 3 29 3 1 12 100 160 -8.932 -0.012 -7.250 1.886 -3.588 -3.109 -3.253 D 28 26 3 29 3 0 9 98 158 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 12 101 160 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 75 - G - - MR 30 29 3 32 3 1 11 99 159 -8.932 -0.012 -7.250 -1.025 -2.960 1.675 -2.419 D 31 29 3 32 3 0 8 97 157 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 11 100 159 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 74 - C - - MR 33 32 3 35 3 1 10 98 158 -8.932 -0.419 -2.000 -3.192 1.860 -3.983 -2.345 D 34 32 3 35 3 0 7 97 156 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 11 99 158 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 73 - U - - MR 36 35 3 38 3 1 10 98 157 -3.477 -0.150 -6.848 -0.183 -1.025 -1.444 1.176 D 37 35 3 38 3 0 7 96 155 -8.400 -0.259 -2.630 IR 38 38 3 38 3 1 10 98 157 -1.993 -0.495 -4.662 0.000 0.000 0.000 0.000 [ MATR 13 ] - 70 - A - - MR 39 38 3 41 3 1 10 96 156 -8.932 -0.012 -7.250 1.330 -1.447 -0.964 -0.721 D 40 38 3 41 3 0 3 94 154 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 8 97 156 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 69 - G - - MR 42 41 3 44 3 1 9 95 155 -8.932 -0.012 -7.250 -0.175 -1.973 1.277 -1.198 D 43 41 3 44 3 0 2 93 153 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 7 96 155 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 68 - c - - MR 45 44 3 47 3 1 8 94 154 -8.932 -0.012 -7.250 -0.778 0.791 -1.820 0.489 D 46 44 3 47 3 0 2 92 152 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 6 95 154 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 67 - A - - MR 48 47 3 50 3 1 7 93 153 -8.932 -0.012 -7.250 1.886 -3.588 -3.109 -3.253 D 49 47 3 50 3 0 1 91 151 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 5 94 153 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 66 - C - - MR 51 50 3 53 3 1 7 92 152 -8.932 -0.012 -7.250 -2.039 1.578 -2.923 -0.646 D 52 50 3 53 3 0 1 90 150 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 5 93 152 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 65 - A - - MR 54 53 3 56 3 1 6 91 151 -8.932 -0.012 -7.250 1.827 -3.028 -2.750 -2.467 D 55 53 3 56 3 0 0 89 149 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 4 92 151 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 64 - G - - MR 57 56 3 59 3 1 5 90 150 -8.932 -0.012 -7.250 -2.792 -4.160 1.893 -3.526 D 58 56 3 59 3 0 0 88 148 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 4 91 150 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 63 - G - - MR 60 59 3 62 3 1 5 89 149 -8.932 -0.012 -7.250 -0.579 -0.729 1.063 -0.649 D 61 59 3 62 3 0 0 87 147 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 3 90 149 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 62 - C - - MR 63 62 3 65 3 1 4 88 148 -8.932 -0.012 -7.250 -3.192 1.860 -3.983 -2.345 D 64 62 3 65 3 0 0 86 146 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 2 89 148 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 61 - C - - MR 66 65 3 68 3 1 4 87 147 -8.932 -0.012 -7.250 -3.192 1.860 -3.983 -2.345 D 67 65 3 68 3 0 0 85 145 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 2 88 147 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 60 - g - - MR 69 68 3 71 3 1 3 86 146 -8.932 -0.012 -7.250 0.622 -2.076 0.908 -1.523 D 70 68 3 71 3 0 0 84 144 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 1 87 146 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 59 - C - - MR 72 71 3 74 5 1 3 85 145 -3.731 -0.134 -7.455 -7.667 -8.558 -1.215 1.390 -2.343 -0.411 D 73 71 3 74 5 0 0 84 143 -5.352 -0.707 -2.978 -4.409 -2.404 IR 74 74 3 74 5 1 1 85 145 -2.773 -0.370 -6.285 -4.452 -5.558 0.000 0.000 0.000 0.000 [ MATP 25 ] 4 57 g c - - MP 75 74 3 79 6 2 4 84 144 -9.390 -9.330 -0.017 -8.106 -8.386 -8.781 -3.364 -2.799 -3.378 1.320 -3.154 -4.125 1.951 -3.518 -3.493 2.413 -3.944 -0.616 0.856 -3.433 -0.308 -2.323 ML 76 74 3 79 6 1 1 82 142 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 3 79 6 1 1 82 141 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 3 79 6 0 0 78 137 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 84 143 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 83 143 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 5 56 u a - - MP 81 80 6 85 6 2 4 82 142 -9.390 -9.330 -0.017 -8.106 -8.386 -8.781 -3.722 -3.598 -3.720 0.556 -2.821 -4.454 2.151 -3.452 -3.686 0.597 -4.161 -1.474 2.723 -3.926 -0.452 -2.552 ML 82 80 6 85 6 1 1 80 140 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 80 139 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 76 135 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 82 141 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 81 141 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 6 55 G C - - MP 87 86 6 91 6 2 3 80 140 -9.390 -9.330 -0.017 -8.106 -8.386 -8.781 -5.581 -3.542 -5.787 -0.082 -6.592 -5.093 -1.680 -6.118 -4.896 3.776 -5.187 -1.269 -1.998 -5.044 -3.771 -4.652 ML 88 86 6 91 6 1 1 78 137 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 77 137 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 74 134 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 80 139 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 79 139 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 7 54 G C - - MP 93 92 6 97 4 2 2 78 138 -7.596 -2.181 -0.394 -6.218 -5.908 -3.669 -6.225 -0.631 -6.840 -5.124 -1.917 -6.475 -5.011 3.826 -5.283 -1.436 -2.280 -5.208 -4.036 -5.086 ML 94 92 6 97 4 1 1 75 134 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 74 134 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 73 132 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 79 138 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 81 141 -0.448 -1.967 -6.493 0.000 0.000 0.000 0.000 [ MATL 29 ] 8 - u - - - ML 99 98 6 101 3 1 1 44 64 -8.932 -0.012 -7.250 -0.542 -0.122 -1.039 0.931 D 100 98 6 101 3 0 0 43 62 -5.620 -0.734 -1.403 IL 101 101 3 101 3 1 1 45 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 40 - a - - MR 102 101 3 104 3 1 1 43 63 -8.932 -0.012 -7.250 0.533 -0.138 -1.255 0.294 D 103 101 3 104 3 0 0 41 61 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 39 - a - - MR 105 104 3 107 3 1 1 42 62 -8.932 -0.012 -7.250 0.895 -1.076 -0.497 -0.062 D 106 104 3 107 3 0 0 40 60 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 38 - A - - MR 108 107 3 110 3 1 1 41 61 -8.932 -0.012 -7.250 1.886 -3.588 -3.109 -3.253 D 109 107 3 110 3 0 0 39 59 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 37 - A - - MR 111 110 3 113 3 1 1 40 60 -8.932 -0.012 -7.250 1.623 -1.677 -2.040 -1.460 D 112 110 3 113 3 0 0 38 58 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 36 - U - - MR 114 113 3 116 5 1 1 39 59 -7.639 -0.027 -7.455 -7.667 -8.558 -1.555 -1.541 -2.469 1.649 D 115 113 3 116 5 0 0 38 57 -5.352 -0.707 -2.978 -4.409 -2.404 IR 116 116 3 116 5 1 1 39 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 9 35 c g - - MP 117 116 3 121 6 2 2 38 58 -9.390 -4.785 -0.069 -8.106 -8.386 -8.781 -1.104 -1.940 -0.596 1.037 -0.663 -2.783 1.808 -2.252 -1.995 0.855 -2.565 -0.578 1.296 -2.075 1.028 -1.180 ML 118 116 3 121 6 1 1 36 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 3 121 6 1 1 36 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 3 121 6 0 0 34 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 37 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 37 57 -2.732 -0.382 -6.243 -4.411 -5.517 0.000 0.000 0.000 0.000 [ MATP 36 ] 10 33 g c - - MP 123 122 6 127 6 2 2 36 56 -9.390 -9.330 -0.017 -8.106 -8.386 -8.781 -3.521 -2.596 -3.465 1.293 -3.750 -4.160 0.856 -3.847 -3.709 2.873 -4.086 -0.321 1.116 -3.436 -1.244 -1.993 ML 124 122 6 127 6 1 1 34 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 34 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 32 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 35 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 11 32 C G - - MP 129 128 6 133 6 2 2 34 54 -9.390 -9.330 -0.017 -8.106 -8.386 -8.781 -5.151 -5.176 -4.720 -1.308 -3.264 -5.039 3.631 -4.123 -4.776 -1.161 -4.993 -3.172 0.735 -5.142 -0.951 -3.581 ML 130 128 6 133 6 1 1 32 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 32 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 30 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 33 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 12 31 u a - - MP 135 134 6 139 6 2 2 32 52 -9.390 -9.330 -0.017 -8.106 -8.386 -8.781 -3.800 -3.695 -3.776 0.722 -2.841 -4.477 2.167 -3.490 -3.749 0.325 -4.208 -1.592 2.746 -3.994 -0.483 -2.618 ML 136 134 6 139 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 30 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 28 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 31 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 13 30 G C - - MP 141 140 6 145 4 2 2 30 50 -4.673 -8.715 -0.104 -5.169 -0.898 -2.888 -4.168 0.617 -4.938 -4.650 -0.309 -4.638 -4.212 3.459 -4.561 -0.543 -0.597 -4.056 -2.284 -3.105 ML 142 140 6 145 4 1 1 29 49 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 4 1 1 29 49 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 144 140 6 145 4 0 0 27 47 -12.737 -14.007 -2.036 -0.404 IL 145 145 5 145 4 1 1 29 49 -3.054 -4.557 -0.501 -2.935 0.000 0.000 0.000 0.000 IR 146 146 6 146 3 1 1 30 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 29 - A - - MR 147 146 6 149 3 1 1 28 48 -8.932 -0.012 -7.250 1.274 -1.572 -0.659 -0.708 D 148 146 6 149 3 0 0 26 46 -6.390 -1.568 -0.620 IR 149 149 3 149 3 1 1 29 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 28 - g - - MR 150 149 3 152 3 1 1 27 47 -8.932 -0.012 -7.250 0.745 -2.048 0.789 -1.495 D 151 149 3 152 3 0 0 25 45 -6.390 -1.568 -0.620 IR 152 152 3 152 3 1 1 28 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 27 - U - - MR 153 152 3 155 5 1 1 26 46 -7.639 -0.027 -7.455 -7.667 -8.558 -2.644 -2.450 -3.417 1.833 D 154 152 3 155 5 0 0 24 44 -5.352 -0.707 -2.978 -4.409 -2.404 IR 155 155 3 155 5 1 1 26 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 15 26 A U - - MP 156 155 3 160 6 2 2 25 45 -9.390 -9.330 -0.017 -8.106 -8.386 -8.781 -2.064 -2.719 -2.825 3.113 -2.877 -3.750 0.543 -0.463 -2.937 0.560 -3.495 -1.046 0.355 -3.034 -1.015 -1.514 ML 157 155 3 160 6 1 1 23 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 3 160 6 1 1 23 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 3 160 6 0 0 21 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 24 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 24 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 16 25 G C - - MP 162 161 6 166 6 2 2 23 42 -9.390 -9.330 -0.017 -8.106 -8.386 -8.781 -4.102 -2.795 -4.070 1.343 -5.059 -4.822 -0.363 -4.514 -4.131 3.044 -4.525 1.550 -0.612 -4.105 -2.340 -2.956 ML 163 161 6 166 6 1 1 22 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 22 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 20 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 22 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 17 24 U G - - MP 168 167 6 172 4 2 2 21 40 -7.596 -4.647 -0.151 -4.203 -4.898 -4.972 -4.491 -1.227 -3.076 -4.815 1.232 -3.914 -4.548 -1.111 -4.788 -3.086 1.698 -4.901 3.147 -3.386 ML 169 167 6 172 4 1 1 21 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 4 1 1 21 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 171 167 6 172 4 0 0 20 40 -4.568 -4.250 -2.265 -0.520 IL 172 172 5 172 4 1 1 23 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 173 173 6 173 3 1 1 22 42 -1.345 -0.835 -4.452 0.000 0.000 0.000 0.000 [ MATL 46 ] 18 - U - - - ML 174 173 6 176 3 1 1 16 34 -8.518 -0.014 -7.172 -1.399 -1.726 -2.442 1.648 D 175 173 6 176 3 0 0 15 34 -6.806 -0.849 -1.198 IL 176 176 3 176 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 19 - A - - - ML 177 176 3 179 3 1 1 14 33 -8.575 -0.013 -7.229 1.661 -2.009 -1.892 -1.644 D 178 176 3 179 3 0 0 15 33 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 20 - G - - - ML 180 179 3 182 3 1 1 13 31 -8.575 -0.013 -7.229 0.327 -2.177 1.138 -1.628 D 181 179 3 182 3 0 0 13 32 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 21 - A - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 1.479 -1.736 -0.838 -1.505 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 50 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME cow-rumen-1 ACC RF02946 DESC cow-rumen-1 RNA LENG 61 MAXL 146 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Oct 1 23:58:50 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 50 EFFN 5.990601 CKSUM 3695967789 STATS LOCAL MSV -7.8679 0.71905 STATS LOCAL VITERBI -8.5993 0.71905 STATS LOCAL FORWARD -3.6203 0.71905 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.22804 1.44567 1.28506 1.63520 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 0.00000 * 1 1.29679 1.85912 2.08176 0.80728 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 2 2.84903 0.27670 2.72160 2.13667 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 3 0.04525 4.41525 4.05023 4.21765 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 4 1.73380 1.33877 0.91432 1.82990 4 g - - < 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 5 2.34318 1.25712 2.24966 0.66539 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 6 2.91240 4.19442 0.08974 4.10992 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 7 3.37770 4.34872 0.06243 4.30708 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 8 1.88410 1.45370 2.17245 0.69228 8 U - - - 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 9 1.53950 1.23231 1.80742 1.10922 9 u - - < 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 10 1.77467 2.26758 0.59571 1.73882 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 11 3.82165 0.18403 3.66955 2.11437 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 12 2.22076 1.25077 2.51871 0.64507 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 13 2.13769 3.34997 0.21465 3.21469 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.06160 3.02098 4.51086 0.40244 1.10469 1.09861 0.40547 14 0.47841 1.87709 2.16927 2.18092 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 15 1.78729 3.17542 0.29995 2.99664 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 16 3.84027 2.16126 3.71583 0.17555 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.06775 4.51086 2.90921 1.46634 0.26236 1.09861 0.40547 17 2.60140 2.91258 3.46247 0.17418 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02325 4.46636 4.46636 1.46634 0.26236 0.33870 1.24720 18 0.18234 2.96640 2.94901 2.76782 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 19 1.14920 3.27140 0.52522 2.92380 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 20 0.29398 2.79686 2.02265 2.79027 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06160 3.02098 4.51086 0.85307 0.55531 1.09861 0.40547 21 1.56530 3.87013 0.29739 3.59837 24 G - - > 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 22 3.24900 0.62185 2.98347 0.98451 25 C - - > 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 23 2.40758 2.38184 2.28748 0.33399 26 U - - > 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 24 3.74956 3.54322 4.29462 0.06838 27 U - - - 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 25 0.82109 3.21228 0.77044 2.86510 28 g - - - 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 26 0.43111 2.72194 1.88889 2.01570 29 A - - - 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 27 2.63264 0.24623 3.16664 2.26122 30 C - - > 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 28 0.70855 2.69602 1.15593 2.07621 31 a - - > 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 29 2.30429 3.81854 0.16226 3.57589 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 30 1.91410 0.66299 2.10226 1.53694 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.10226 2.45088 4.51086 0.23792 1.55243 1.09861 0.40547 31 1.44694 1.97526 0.83674 1.64578 35 g - - > 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 32 2.74297 2.69561 3.45263 0.17858 36 U - - - 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 33 0.20148 2.68869 3.13794 2.64312 37 A - - - 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 34 0.04525 4.41525 4.05023 4.21765 38 A - - - 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 35 0.71266 2.26083 1.75600 1.45815 39 a - - - 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 36 0.98188 1.46340 2.40933 1.19050 40 a - - - 1.38629 1.38629 1.38629 1.38629 0.29064 1.42202 4.51086 1.71987 0.19734 1.09861 0.40547 37 4.41416 0.07680 4.21779 3.05581 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 38 4.24519 0.10664 4.04576 2.66894 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 39 0.73496 2.40662 1.15567 2.15841 56 a - - > 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 40 2.18655 0.98910 1.18392 1.56203 57 c - - > 1.38629 1.38629 1.38629 1.38629 0.11439 2.33199 4.51086 0.21275 1.65214 1.09861 0.40547 41 2.45091 0.34074 3.36284 1.78437 59 C - - : 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 42 0.91635 3.22190 0.68591 2.87331 60 G - - : 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 43 4.17671 0.05552 4.65035 3.53715 61 C - - : 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 44 4.17671 0.05552 4.65035 3.53715 62 C - - : 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 45 1.97269 1.91976 0.54276 2.01638 63 G - - : 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 46 3.80990 4.80598 0.04456 4.32343 64 G - - : 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 47 0.07886 3.90531 3.73318 3.44886 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 48 3.23796 0.22209 3.86143 1.97416 66 C - - : 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 49 0.04525 4.41525 4.05023 4.21765 67 A - - : 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 50 2.10567 0.74749 2.93686 1.04512 68 c - - : 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 51 1.56884 3.02890 0.42325 2.42553 69 G - - : 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 52 0.39141 2.57989 2.15707 2.02153 70 A - - : 1.38629 1.38629 1.38629 1.38629 0.48381 2.43006 1.21895 0.42213 1.06610 1.09861 0.40547 53 1.58071 2.30987 2.62107 0.47454 73 U - - : 1.38629 1.38629 1.38629 1.38629 0.03120 4.17602 4.17602 1.46634 0.26236 0.07173 2.67049 54 4.17671 0.05552 4.65035 3.53715 74 C - - : 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 55 2.23423 3.82224 0.17467 3.46383 75 G - - : 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 56 0.04525 4.41525 4.05023 4.21765 76 A - - : 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 57 0.04525 4.41525 4.05023 4.21765 77 A - - : 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 58 1.85652 3.58892 0.25226 3.24140 78 G - - : 1.38629 1.38629 1.38629 1.38629 0.09012 2.58773 4.51086 0.27037 1.44011 1.09861 0.40547 59 0.04525 4.41525 4.05023 4.21765 80 A - - : 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 60 3.80990 4.80598 0.04456 4.32343 81 G - - : 1.38629 1.38629 1.38629 1.38629 0.02222 4.51086 4.51086 1.46634 0.26236 1.09861 0.40547 61 3.80990 4.80598 0.04456 4.32343 82 G - - : 1.38629 1.38629 1.38629 1.38629 0.01117 4.49981 * 1.46634 0.26236 0.00000 * //