INFERNAL1/a [1.1.5 | Sep 2023] NAME cow-rumen-1 ACC RF02946 DESC cow-rumen-1 RNA STATES 187 NODES 51 CLEN 61 W 85 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 08:50:55 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02946/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 50 EFFN 4.287720 CKSUM 3695967789 NULL 0.000 0.000 0.000 0.000 GA 53.40 TC 54.00 NC 38.20 EFP7GF -12.2300 0.71905 ECMLC 0.72981 -5.98533 2.19171 1600000 468705 0.002560 ECMGC 0.42617 -18.75319 -5.09827 1600000 134699 0.002970 ECMLI 0.67015 -5.13705 3.31091 1600000 345062 0.003478 ECMGI 0.45314 -14.20645 -2.24508 1600000 90368 0.004426 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 85 115 -7.688 -7.895 -0.032 -6.309 IL 1 1 2 1 4 1 21 88 118 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 20 87 117 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 1 20 85 115 -8.662 -0.013 -7.316 0.200 -0.625 -0.864 0.725 D 4 2 3 5 3 0 16 83 114 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 19 86 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 19 84 114 -8.662 -0.013 -7.316 -1.496 1.423 -1.530 -0.693 D 7 5 3 8 3 0 15 82 113 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 19 85 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 18 83 113 -9.016 -0.012 -7.333 1.899 -3.750 -3.259 -3.430 D 10 8 3 11 3 0 14 82 112 -5.620 -0.734 -1.403 IL 11 11 3 11 3 1 17 84 114 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 82 - G - - MR 12 11 3 14 3 1 17 82 112 -9.016 -0.012 -7.333 -2.942 -4.325 1.904 -3.681 D 13 11 3 14 3 0 13 80 110 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 16 83 113 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 81 - G - - MR 15 14 3 17 3 1 16 81 111 -9.016 -0.012 -7.333 -2.942 -4.325 1.904 -3.681 D 16 14 3 17 3 0 12 79 109 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 16 82 112 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 80 - A - - MR 18 17 3 20 3 1 15 80 110 -4.028 -0.101 -7.333 1.899 -3.750 -3.259 -3.430 D 19 17 3 20 3 0 11 78 108 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 15 80 111 -2.311 -0.404 -4.549 0.000 0.000 0.000 0.000 [ MATR 7 ] - 78 - G - - MR 21 20 3 23 3 1 14 79 109 -9.016 -0.012 -7.333 -0.403 -2.648 1.513 -2.118 D 22 20 3 23 3 0 10 77 107 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 14 79 110 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 77 - A - - MR 24 23 3 26 3 1 13 78 108 -9.016 -0.012 -7.333 1.899 -3.750 -3.259 -3.430 D 25 23 3 26 3 0 10 76 106 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 13 78 109 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 76 - A - - MR 27 26 3 29 3 1 12 77 107 -9.016 -0.012 -7.333 1.899 -3.750 -3.259 -3.430 D 28 26 3 29 3 0 9 75 105 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 12 77 108 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 75 - G - - MR 30 29 3 32 3 1 11 76 106 -9.016 -0.012 -7.333 -0.830 -2.914 1.638 -2.383 D 31 29 3 32 3 0 8 74 105 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 11 76 107 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 74 - C - - MR 33 32 3 35 3 1 10 75 105 -9.016 -0.470 -1.856 -3.375 1.876 -4.148 -2.505 D 34 32 3 35 3 0 8 74 104 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 11 76 106 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 73 - U - - MR 36 35 3 38 3 1 11 74 105 -3.383 -0.159 -6.879 -0.101 -1.026 -1.423 1.140 D 37 35 3 38 3 0 7 73 103 -8.578 -0.227 -2.808 IR 38 38 3 38 3 1 10 74 105 -2.163 -0.440 -4.650 0.000 0.000 0.000 0.000 [ MATR 13 ] - 70 - A - - MR 39 38 3 41 3 1 10 73 103 -9.016 -0.012 -7.333 1.239 -1.360 -0.805 -0.560 D 40 38 3 41 3 0 3 71 101 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 8 74 104 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 69 - G - - MR 42 41 3 44 3 1 9 72 102 -9.016 -0.012 -7.333 -0.108 -1.996 1.255 -1.200 D 43 41 3 44 3 0 3 70 100 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 7 73 103 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 68 - c - - MR 45 44 3 47 3 1 8 71 101 -9.016 -0.012 -7.333 -0.723 0.724 -1.825 0.547 D 46 44 3 47 3 0 2 69 99 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 6 72 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 67 - A - - MR 48 47 3 50 3 1 8 70 100 -9.016 -0.012 -7.333 1.899 -3.750 -3.259 -3.430 D 49 47 3 50 3 0 1 68 99 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 6 71 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 66 - C - - MR 51 50 3 53 3 1 7 69 99 -9.016 -0.012 -7.333 -2.096 1.574 -2.991 -0.591 D 52 50 3 53 3 0 1 67 98 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 5 70 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 65 - A - - MR 54 53 3 56 3 1 6 68 98 -9.016 -0.012 -7.333 1.826 -3.032 -2.799 -2.407 D 55 53 3 56 3 0 0 66 97 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 4 69 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 64 - G - - MR 57 56 3 59 3 1 6 67 97 -9.016 -0.012 -7.333 -2.942 -4.325 1.904 -3.681 D 58 56 3 59 3 0 0 65 96 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 4 68 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 63 - G - - MR 60 59 3 62 3 1 5 66 96 -9.016 -0.012 -7.333 -0.602 -0.719 1.063 -0.634 D 61 59 3 62 3 0 0 64 95 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 3 67 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 62 - C - - MR 63 62 3 65 3 1 4 65 95 -9.016 -0.012 -7.333 -3.375 1.876 -4.148 -2.505 D 64 62 3 65 3 0 0 63 94 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 2 66 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 61 - C - - MR 66 65 3 68 3 1 4 64 94 -9.016 -0.012 -7.333 -3.375 1.876 -4.148 -2.505 D 67 65 3 68 3 0 0 62 93 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 2 65 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 60 - g - - MR 69 68 3 71 3 1 3 63 93 -9.016 -0.012 -7.333 0.710 -2.165 0.861 -1.621 D 70 68 3 71 3 0 0 61 92 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 1 64 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 59 - C - - MR 72 71 3 74 5 1 3 62 92 -3.812 -0.126 -7.534 -7.746 -8.638 -1.184 1.350 -2.343 -0.299 D 73 71 3 74 5 0 0 60 91 -5.352 -0.707 -2.978 -4.409 -2.404 IR 74 74 3 74 5 1 1 62 92 -2.773 -0.370 -6.284 -4.452 -5.558 0.000 0.000 0.000 0.000 [ MATP 25 ] 4 57 g c - - MP 75 74 3 79 6 2 4 61 91 -9.436 -9.375 -0.017 -8.152 -8.431 -8.826 -3.455 -2.865 -3.462 1.413 -3.225 -4.209 2.056 -3.589 -3.575 2.367 -4.022 -0.662 0.808 -3.518 -0.616 -2.393 ML 76 74 3 79 6 1 1 59 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 3 79 6 1 1 59 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 3 79 6 0 0 56 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 60 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 60 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 5 56 u a - - MP 81 80 6 85 6 2 4 59 89 -9.436 -9.375 -0.017 -8.152 -8.431 -8.826 -3.704 -3.574 -3.720 0.657 -2.845 -4.479 2.183 -3.464 -3.679 0.654 -4.167 -1.437 2.663 -3.915 -0.468 -2.543 ML 82 80 6 85 6 1 1 57 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 57 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 54 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 58 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 58 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 6 55 G C - - MP 87 86 6 91 6 2 3 57 87 -9.436 -9.375 -0.017 -8.152 -8.431 -8.826 -5.648 -3.591 -5.860 -0.038 -6.712 -5.145 -1.774 -6.201 -4.953 3.779 -5.243 -1.319 -2.084 -5.100 -3.868 -4.724 ML 88 86 6 91 6 1 1 55 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 55 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 53 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 56 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 56 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 7 54 G C - - MP 93 92 6 97 4 2 2 55 85 -7.688 -2.753 -0.262 -6.309 -6.065 -3.749 -6.432 -0.748 -7.048 -5.181 -2.088 -6.669 -5.095 3.842 -5.360 -1.526 -2.450 -5.304 -4.221 -5.291 ML 94 92 6 97 4 1 1 54 84 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 53 84 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 52 82 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 56 86 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 56 86 -0.875 -1.209 -5.481 0.000 0.000 0.000 0.000 [ MATL 29 ] 8 - u - - - ML 99 98 6 101 3 1 1 43 62 -9.016 -0.012 -7.333 -0.477 0.053 -0.994 0.801 D 100 98 6 101 3 0 0 42 61 -5.620 -0.734 -1.403 IL 101 101 3 101 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 40 - u - - MR 102 101 3 104 3 1 1 42 61 -9.016 -0.012 -7.333 0.395 -0.119 -1.303 0.442 D 103 101 3 104 3 0 0 40 59 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 39 - a - - MR 105 104 3 107 3 1 1 41 60 -9.016 -0.012 -7.333 0.734 -1.029 -0.321 0.066 D 106 104 3 107 3 0 0 39 58 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 38 - A - - MR 108 107 3 110 3 1 1 40 59 -9.016 -0.012 -7.333 1.899 -3.750 -3.259 -3.430 D 109 107 3 110 3 0 0 38 57 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 37 - A - - MR 111 110 3 113 3 1 1 39 58 -9.016 -0.012 -7.333 1.582 -1.494 -2.015 -1.312 D 112 110 3 113 3 0 0 37 56 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 36 - U - - MR 114 113 3 116 5 1 1 38 57 -7.719 -0.025 -7.534 -7.746 -8.638 -1.575 -1.584 -2.534 1.659 D 115 113 3 116 5 0 0 37 56 -5.352 -0.707 -2.978 -4.409 -2.404 IR 116 116 3 116 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 9 35 c g - - MP 117 116 3 121 6 2 2 37 56 -9.436 -4.761 -0.069 -8.152 -8.431 -8.826 -1.104 -1.951 -0.315 1.034 -0.462 -2.793 1.815 -2.265 -2.005 0.833 -2.576 -0.594 1.293 -2.085 0.882 -1.192 ML 118 116 3 121 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 3 121 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 3 121 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 36 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 36 55 -2.747 -0.377 -6.258 -4.426 -5.532 0.000 0.000 0.000 0.000 [ MATP 36 ] 10 33 g c - - MP 123 122 6 127 6 2 2 35 54 -9.436 -9.375 -0.017 -8.152 -8.431 -8.826 -3.471 -2.634 -3.437 1.289 -3.628 -4.145 0.952 -3.784 -3.656 2.791 -4.053 -0.389 1.279 -3.424 -1.171 -1.851 ML 124 122 6 127 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 11 32 C G - - MP 129 128 6 133 6 2 2 33 52 -9.436 -9.375 -0.017 -8.152 -8.431 -8.826 -5.172 -5.203 -4.739 -1.325 -3.273 -5.057 3.612 -4.129 -4.789 -1.181 -5.013 -3.199 0.884 -5.158 -0.952 -3.591 ML 130 128 6 133 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 12 31 u a - - MP 135 134 6 139 6 2 2 31 50 -9.436 -9.375 -0.017 -8.152 -8.431 -8.826 -3.851 -3.743 -3.830 0.744 -2.887 -4.541 2.267 -3.536 -3.798 0.293 -4.261 -1.624 2.688 -4.047 -0.519 -2.660 ML 136 134 6 139 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 13 30 G C - - MP 141 140 6 145 4 2 2 29 48 -5.809 -8.801 -0.068 -5.255 -0.761 -2.968 -4.296 0.529 -5.111 -4.741 -0.444 -4.769 -4.313 3.493 -4.657 -0.618 -0.731 -4.167 -2.427 -3.226 ML 142 140 6 145 4 1 1 28 47 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 4 1 1 28 47 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 144 140 6 145 4 0 0 26 45 -12.737 -14.007 -2.036 -0.404 IL 145 145 5 145 4 1 1 28 47 -2.916 -4.418 -0.563 -2.797 0.000 0.000 0.000 0.000 IR 146 146 6 146 3 1 1 29 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 29 - A - - MR 147 146 6 149 3 1 1 27 46 -9.016 -0.012 -7.333 1.348 -1.671 -0.851 -0.773 D 148 146 6 149 3 0 0 25 44 -6.390 -1.568 -0.620 IR 149 149 3 149 3 1 1 28 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 28 - g - - MR 150 149 3 152 3 1 1 26 45 -9.016 -0.012 -7.333 0.740 -2.160 0.832 -1.615 D 151 149 3 152 3 0 0 24 43 -6.390 -1.568 -0.620 IR 152 152 3 152 3 1 1 27 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 27 - U - - MR 153 152 3 155 5 1 1 25 44 -7.719 -0.025 -7.534 -7.746 -8.638 -2.803 -2.585 -3.579 1.851 D 154 152 3 155 5 0 0 23 43 -5.352 -0.707 -2.978 -4.409 -2.404 IR 155 155 3 155 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 15 26 a u - - MP 156 155 3 160 6 2 2 24 43 -9.436 -9.375 -0.017 -8.152 -8.431 -8.826 -1.728 -2.461 -2.582 2.831 -2.607 -3.480 0.779 0.037 -2.663 0.757 -3.224 -0.817 0.599 -2.763 -0.760 -1.099 ML 157 155 3 160 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 3 160 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 3 160 6 0 0 20 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 16 25 G C - - MP 162 161 6 166 6 2 2 22 41 -9.436 -9.375 -0.017 -8.152 -8.431 -8.826 -4.197 -2.866 -4.167 1.270 -5.216 -4.936 -0.491 -4.607 -4.211 3.039 -4.609 1.703 -0.735 -4.217 -2.471 -3.042 ML 163 161 6 166 6 1 1 21 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 17 24 U G - - MP 168 167 6 172 4 2 2 20 39 -7.688 -5.845 -0.120 -4.112 -5.005 -5.085 -4.588 -1.330 -3.160 -4.905 1.151 -4.001 -4.645 -1.221 -4.881 -3.201 1.856 -5.002 3.124 -3.479 ML 169 167 6 172 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 171 167 6 172 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 172 172 5 172 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 173 173 6 173 3 1 1 21 40 -1.398 -0.814 -4.273 0.000 0.000 0.000 0.000 [ MATL 46 ] 18 - U - - - ML 174 173 6 176 3 1 1 16 34 -8.598 -0.013 -7.252 -1.398 -1.787 -2.505 1.657 D 175 173 6 176 3 0 0 15 34 -6.895 -0.782 -1.287 IL 176 176 3 176 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 19 - A - - - ML 177 176 3 179 3 1 1 14 33 -8.662 -0.013 -7.316 1.640 -1.903 -1.835 -1.578 D 178 176 3 179 3 0 0 15 33 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 20 - G - - - ML 180 179 3 182 3 1 1 13 31 -8.662 -0.013 -7.316 0.526 -2.213 1.021 -1.669 D 181 179 3 182 3 0 0 13 32 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 21 - A - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 1.467 -1.743 -0.751 -1.543 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 50 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME cow-rumen-1 ACC RF02946 DESC cow-rumen-1 RNA LENG 61 MAXL 134 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 08:50:55 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02946/CM NSEQ 50 EFFN 6.729126 CKSUM 3695967789 STATS LOCAL MSV -7.9407 0.71905 STATS LOCAL VITERBI -8.5489 0.71905 STATS LOCAL FORWARD -3.6868 0.71905 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.22461 1.44324 1.28523 1.64311 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 0.00000 * 1 1.23938 1.88627 2.03874 0.84722 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 2 2.83951 0.30123 2.55622 2.08712 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 3 0.03899 4.56285 4.19142 4.36776 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 4 1.66648 1.25328 0.95479 1.96162 4 g - - < 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 5 2.27013 1.22895 2.21417 0.70348 5 u - - < 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 6 2.87764 4.28414 0.08892 4.19772 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 7 3.47949 4.47518 0.05552 4.44014 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 8 1.83189 1.31021 2.13692 0.79384 8 u - - - 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 9 1.48855 1.19409 1.83673 1.16480 9 u - - < 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 10 1.77805 2.20528 0.64822 1.62030 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 11 3.87094 0.19510 3.72109 2.02344 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 12 2.20927 1.16842 2.56061 0.68895 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 13 2.17539 3.51569 0.19518 3.38086 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03515 3.71853 4.57892 0.70225 0.68413 1.09861 0.40547 14 0.62373 1.59369 2.05396 2.01999 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 15 1.86134 3.31218 0.26891 3.12606 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 16 3.95029 2.25274 3.83152 0.15787 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.07099 4.57892 2.84281 1.46634 0.26236 1.09861 0.40547 17 2.59150 2.98208 3.53467 0.16814 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02180 4.52973 4.52973 1.46634 0.26236 0.30189 1.34485 18 0.19324 2.88428 2.90983 2.72819 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 19 0.98934 3.35658 0.60788 3.01970 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 20 0.30041 2.81502 1.95016 2.85886 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03515 3.71853 4.57892 0.99798 0.45985 1.09861 0.40547 21 1.44558 3.98446 0.32671 3.70912 24 G - - > 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 22 3.37600 0.63094 3.11913 0.94281 25 C - - > 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 23 2.27632 2.27824 2.19988 0.37971 26 U - - > 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 24 3.89390 3.67171 4.44135 0.05930 27 U - - - 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 25 0.82416 3.34347 0.74077 3.00911 28 g - - - 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 26 0.37688 2.82832 2.05052 2.06972 29 A - - - 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 27 2.62768 0.22293 3.33410 2.38666 30 C - - > 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 28 0.75225 2.73856 1.08466 2.07138 31 a - - > 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 29 2.19031 3.86843 0.17373 3.62303 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 30 1.78772 0.71489 2.04659 1.54066 33 c - - > 1.38629 1.38629 1.38629 1.38629 0.09931 2.47375 4.57892 0.22804 1.59010 1.09861 0.40547 31 1.41530 2.00460 0.83694 1.66389 35 g - - > 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 32 2.75412 2.73680 3.52311 0.17192 36 U - - - 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 33 0.22389 2.54566 3.14693 2.53589 37 A - - - 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 34 0.03899 4.56285 4.19142 4.36776 38 A - - - 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 35 0.83368 2.22841 1.61064 1.35443 39 a - - - 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 36 1.08713 1.44935 2.46060 1.07086 40 u - - - 1.38629 1.38629 1.38629 1.38629 0.19060 1.81237 4.57892 1.09936 0.40509 1.09861 0.40547 37 4.53352 0.06857 4.35039 3.15521 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 38 4.32874 0.10476 4.13690 2.65496 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 39 0.77458 2.36864 1.13179 2.09525 56 a - - > 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 40 2.25127 1.02880 1.14919 1.51229 57 c - - > 1.38629 1.38629 1.38629 1.38629 0.10646 2.39997 4.57892 0.21273 1.65221 1.09861 0.40547 41 2.42571 0.36765 3.37857 1.68671 59 C - - : 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 42 0.84659 3.34414 0.72052 3.00916 60 g - - : 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 43 4.31897 0.04828 4.76893 3.67573 61 C - - : 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 44 4.31897 0.04828 4.76893 3.67573 62 C - - : 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 45 2.00083 1.91086 0.54085 2.00569 63 G - - : 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 46 3.93769 4.94792 0.03903 4.44958 64 G - - : 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 47 0.07978 3.91835 3.78978 3.37524 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 48 3.30174 0.22660 3.93393 1.92160 66 C - - : 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 49 0.03899 4.56285 4.19142 4.36776 67 A - - : 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 50 2.06085 0.79274 2.96314 0.99861 68 c - - : 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 51 1.51346 3.07252 0.43667 2.43769 69 G - - : 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 52 0.45260 2.51949 2.02128 1.89019 70 A - - : 1.38629 1.38629 1.38629 1.38629 0.53125 2.41841 1.12990 0.31628 1.30511 1.09861 0.40547 53 1.51025 2.32428 2.61641 0.49721 73 U - - : 1.38629 1.38629 1.38629 1.38629 0.03033 4.20379 4.20379 1.46634 0.26236 0.06162 2.81749 54 4.31897 0.04828 4.76893 3.67573 74 C - - : 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 55 2.06845 3.80650 0.19856 3.45827 75 G - - : 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 56 0.03899 4.56285 4.19142 4.36776 76 A - - : 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 57 0.03899 4.56285 4.19142 4.36776 77 A - - : 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 58 1.72741 3.61273 0.27786 3.27345 78 G - - : 1.38629 1.38629 1.38629 1.38629 0.09353 2.53802 4.57892 0.24221 1.53660 1.09861 0.40547 59 0.03899 4.56285 4.19142 4.36776 80 A - - : 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 60 3.93769 4.94792 0.03903 4.44958 81 G - - : 1.38629 1.38629 1.38629 1.38629 0.02075 4.57892 4.57892 1.46634 0.26236 1.09861 0.40547 61 3.93769 4.94792 0.03903 4.44958 82 G - - : 1.38629 1.38629 1.38629 1.38629 0.01043 4.56860 * 1.46634 0.26236 0.00000 * //