INFERNAL1/a [1.1.5 | Sep 2023] NAME Bacilli-1 ACC RF02931 DESC Bacilli-1 RNA STATES 204 NODES 58 CLEN 65 W 80 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 10:32:53 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02931/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 145 EFFN 2.986908 CKSUM 929998263 NULL 0.000 0.000 0.000 0.000 GA 55.60 TC 60.60 NC 55.30 EFP7GF -10.7514 0.71896 ECMLC 0.69469 -6.27871 2.32723 1600000 473817 0.002533 ECMGC 0.42662 -15.77519 -3.02495 1600000 92132 0.004342 ECMLI 0.68227 -4.76378 3.54119 1600000 346743 0.003461 ECMGI 0.43647 -12.07854 -0.09506 1600000 74748 0.005351 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 80 99 -7.327 -7.534 -0.041 -5.948 IL 1 1 2 1 4 1 27 84 104 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 26 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 26 80 100 -8.689 -0.015 -7.007 1.836 -3.090 -2.652 -2.706 D 4 2 3 5 3 0 21 79 98 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 25 81 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 67 - U - - MR 6 5 3 8 3 1 25 79 98 -8.689 -0.015 -7.007 -1.412 -1.471 -1.907 1.583 D 7 5 3 8 3 0 20 78 97 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 24 80 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 66 - u - - MR 9 8 3 11 3 1 24 78 97 -8.689 -0.015 -7.007 -1.028 0.310 -1.822 0.991 D 10 8 3 11 3 0 19 77 96 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 23 79 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 65 - g - - MR 12 11 3 14 3 1 23 77 96 -8.689 -0.015 -7.007 -0.481 -0.873 0.636 0.243 D 13 11 3 14 3 0 18 76 95 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 23 78 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 64 - U - - MR 15 14 3 17 3 1 23 76 95 -8.689 -0.015 -7.007 -1.559 -1.104 -2.304 1.582 D 16 14 3 17 3 0 17 75 94 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 22 77 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 63 - C - - MR 18 17 3 20 3 1 22 75 94 -8.689 -0.015 -7.007 -1.724 1.520 -2.584 -0.594 D 19 17 3 20 3 0 16 74 93 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 21 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 62 - A - - MR 21 20 3 23 3 1 21 74 93 -8.689 -0.015 -7.007 1.779 -2.763 -2.126 -2.381 D 22 20 3 23 3 0 16 73 92 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 20 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 61 - A - - MR 24 23 3 26 3 1 20 73 92 -8.689 -0.015 -7.007 1.640 -2.095 -1.983 -1.338 D 25 23 3 26 3 0 15 72 91 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 19 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 60 - A - - MR 27 26 3 29 3 1 19 72 91 -8.689 -0.015 -7.007 1.035 -1.002 -0.331 -0.607 D 28 26 3 29 3 0 14 71 90 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 18 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 59 - A - - MR 30 29 3 32 3 1 19 71 90 -8.689 -0.015 -7.007 1.752 -2.544 -2.295 -1.966 D 31 29 3 32 3 0 13 69 89 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 18 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 58 - A - - MR 33 32 3 35 3 1 18 70 89 -8.689 -0.015 -7.007 1.725 -2.537 -1.761 -2.140 D 34 32 3 35 3 0 12 68 88 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 17 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 57 - U - - MR 36 35 3 38 3 1 17 69 88 -2.386 -0.320 -7.007 -0.951 -1.251 -1.360 1.418 D 37 35 3 38 3 0 12 67 86 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 16 69 88 -2.755 -0.285 -4.994 0.000 0.000 0.000 0.000 [ MATR 13 ] - 55 - C - - MR 39 38 3 41 3 1 16 68 87 -8.689 -0.015 -7.007 -1.495 1.506 -1.803 -0.948 D 40 38 3 41 3 0 11 66 85 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 15 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 54 - G - - MR 42 41 3 44 3 1 15 67 86 -8.689 -0.015 -7.007 -0.271 -1.927 1.313 -1.236 D 43 41 3 44 3 0 10 65 84 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 14 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 53 - A - - MR 45 44 3 47 3 1 14 66 85 -8.689 -0.015 -7.007 1.779 -2.763 -2.125 -2.381 D 46 44 3 47 3 0 10 64 83 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 14 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 52 - G - - MR 48 47 3 50 3 1 13 65 84 -8.689 -0.015 -7.007 -0.442 -2.317 1.468 -1.755 D 49 47 3 50 3 0 9 63 82 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 13 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 51 - A - - MR 51 50 3 53 3 1 12 64 83 -8.689 -0.015 -7.007 1.836 -3.090 -2.652 -2.706 D 52 50 3 53 3 0 8 62 81 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 12 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 50 - C - - MR 54 53 3 56 3 1 12 63 82 -8.689 -0.015 -7.007 -2.609 1.794 -3.434 -1.855 D 55 53 3 56 3 0 8 61 80 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 11 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 49 - G - - MR 57 56 3 59 3 1 11 62 81 -8.689 -0.015 -7.007 -2.315 -3.634 1.846 -3.017 D 58 56 3 59 3 0 7 60 79 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 10 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 48 - G - - MR 60 59 3 62 3 1 10 61 80 -8.689 -0.015 -7.007 -1.937 -3.257 1.793 -2.567 D 61 59 3 62 3 0 6 59 78 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 9 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 47 - U - - MR 63 62 3 65 3 1 9 60 79 -8.689 -0.015 -7.007 -2.161 -2.043 -2.921 1.766 D 64 62 3 65 3 0 6 58 77 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 9 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 46 - U - - MR 66 65 3 68 3 1 8 59 78 -5.835 -0.037 -7.007 -2.161 -2.043 -2.921 1.766 D 67 65 3 68 3 0 5 57 76 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 8 59 79 -2.012 -0.515 -4.251 0.000 0.000 0.000 0.000 [ MATR 23 ] - 44 - C - - MR 69 68 3 71 3 1 7 58 77 -8.689 -0.015 -7.007 -1.447 1.354 -2.310 -0.192 D 70 68 3 71 3 0 5 56 76 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 7 58 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 43 - G - - MR 72 71 3 74 2 1 6 57 76 -8.773 -0.003 -1.751 -3.247 1.782 -2.660 D 73 71 3 74 2 0 5 56 75 -4.432 -0.068 IR 74 74 3 74 2 1 6 58 77 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 25 ] - - - - - - B 75 74 3 76 126 0 5 56 75 [ BEGL 26 ] - - - - - - S 76 75 1 77 4 0 0 29 48 -0.039 -7.037 -6.445 -7.085 [ MATP 27 ] 2 17 u a - - MP 77 76 1 81 6 2 2 29 48 -9.264 -9.203 -0.019 -7.980 -8.260 -8.655 -3.413 -3.384 -3.434 0.212 -2.688 -4.146 1.801 -3.294 -3.445 0.438 -3.918 -1.460 2.950 -2.214 -0.418 -2.380 ML 78 76 1 81 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 79 76 1 81 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 80 76 1 81 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 81 81 5 81 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 3 16 c g - - MP 83 82 6 87 6 2 2 27 46 -9.264 -9.203 -0.019 -7.980 -8.260 -8.655 -3.913 -3.922 -3.784 -0.218 -2.709 -4.340 2.336 -3.433 -3.802 -0.052 -4.186 -1.978 1.759 -4.057 2.216 -2.689 ML 84 82 6 87 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 85 82 6 87 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 86 82 6 87 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 87 87 5 87 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 88 88 6 88 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 4 15 C G - - MP 89 88 6 93 6 2 2 25 44 -9.264 -9.203 -0.019 -7.980 -8.260 -8.655 -4.227 -4.196 -4.020 -0.359 -2.446 -4.519 3.270 -3.561 -4.029 -0.168 -4.377 -2.148 1.496 -4.325 -0.213 -2.865 ML 90 88 6 93 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 91 88 6 93 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 6 93 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 93 93 5 93 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 5 14 a u - - MP 95 94 6 99 6 2 2 23 42 -9.264 -9.203 -0.019 -7.980 -8.260 -8.655 -3.372 -2.066 -2.794 2.878 -3.845 -4.408 0.308 -3.728 -3.486 1.993 -3.981 -0.071 0.055 -3.615 -1.547 -2.392 ML 96 94 6 99 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 97 94 6 99 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 98 94 6 99 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 99 99 5 99 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 100 100 6 100 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 6 13 U A - - MP 101 100 6 105 6 2 2 21 40 -9.264 -9.203 -0.019 -7.980 -8.260 -8.655 -4.179 -4.136 -3.976 -0.347 -2.783 -4.478 2.116 -3.537 -3.991 -0.147 -4.340 -2.106 3.045 -4.284 -0.451 -2.839 ML 102 100 6 105 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 103 100 6 105 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 104 100 6 105 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 105 105 5 105 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 106 106 6 106 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 7 12 G C - - MP 107 106 6 111 4 2 2 19 38 -7.327 -7.534 -0.051 -5.435 -3.912 -2.689 -3.900 1.989 -4.652 -4.632 -0.063 -4.292 -3.934 3.070 -4.342 -0.154 -0.337 -3.937 -2.038 -2.797 ML 108 106 6 111 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 109 106 6 111 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 110 106 6 111 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 111 111 5 111 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 112 112 6 112 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 8 - G - - - ML 113 112 6 115 3 1 1 16 34 -8.310 -0.016 -6.964 -2.296 -3.613 1.844 -2.997 D 114 112 6 115 3 0 0 16 34 -6.281 -1.474 -0.673 IL 115 115 3 115 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 9 - U - - - ML 116 115 3 118 3 1 1 15 33 -8.319 -0.016 -6.973 -1.034 -0.849 -1.904 1.427 D 117 115 3 118 3 0 0 15 33 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 10 - G - - - ML 119 118 3 121 3 1 1 13 31 -8.319 -0.016 -6.973 -0.447 -2.320 1.470 -1.759 D 120 118 3 121 3 0 0 13 32 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 11 - A - - - ML 122 121 3 124 2 1 1 1 1 * 0.000 1.836 -3.090 -2.652 -2.706 D 123 121 3 124 2 0 0 0 0 * 0.000 IL 124 124 3 124 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 37 ] - - - - - - E 125 124 3 -1 0 0 0 0 0 [ BEGR 38 ] - - - - - - S 126 75 1 127 5 0 0 39 58 -7.408 -0.031 -7.223 -7.435 -8.327 IL 127 127 2 127 5 1 1 40 59 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 18 42 c g - - MP 128 127 2 132 6 2 2 39 58 -9.264 -9.203 -0.019 -7.980 -8.260 -8.655 -3.561 -3.338 -3.576 0.839 -2.763 -4.347 2.960 -3.351 -3.539 0.890 -4.022 -0.984 1.199 -3.772 -0.312 -2.402 ML 129 127 2 132 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 2 132 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 2 132 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 19 41 a u - - MP 134 133 6 138 6 2 2 37 56 -9.264 -9.203 -0.019 -7.980 -8.260 -8.655 -3.695 -2.645 -3.752 2.846 -4.431 -4.907 -0.048 -4.013 -3.702 2.263 -4.214 0.228 -0.301 -4.056 -1.974 -2.607 ML 135 133 6 138 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 20 40 c g - - MP 140 139 6 144 6 2 2 35 54 -9.264 -9.203 -0.019 -7.980 -8.260 -8.655 -3.951 -3.899 -3.829 -0.085 -2.726 -4.412 2.877 -3.445 -3.823 0.111 -4.221 -1.841 2.143 -4.093 0.143 -2.677 ML 141 139 6 144 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 21 39 A U - - MP 146 145 6 150 6 2 2 33 52 -9.264 -9.203 -0.019 -7.980 -8.260 -8.655 -3.746 -2.698 -3.826 3.081 -4.553 -5.163 -0.212 -4.034 -3.717 1.865 -4.263 0.381 -0.452 -4.250 -2.125 -2.652 ML 147 145 6 150 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 22 38 U A - - MP 152 151 6 156 6 2 2 31 50 -9.264 -9.203 -0.019 -7.980 -8.260 -8.655 -4.576 -4.546 -4.333 -0.775 -3.099 -4.796 1.353 -3.871 -4.356 -0.576 -4.684 -2.540 3.422 -4.657 -0.507 -3.152 ML 153 151 6 156 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 23 37 a u - - MP 158 157 6 162 6 2 2 29 48 -9.264 -9.203 -0.019 -7.980 -8.260 -8.655 -3.537 -1.514 -3.602 2.975 -4.185 -4.724 0.025 -3.880 -3.589 1.950 -4.106 0.065 -0.211 -3.887 -1.841 -2.513 ML 159 157 6 162 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 24 36 G C - - MP 164 163 6 168 4 2 2 27 46 -7.327 -7.534 -0.041 -5.948 -4.155 -2.809 -4.145 1.571 -4.940 -4.681 -0.274 -4.555 -4.105 3.303 -4.484 -0.342 -0.553 -4.084 -2.270 -3.040 ML 165 163 6 168 4 1 1 28 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 4 1 1 27 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 167 163 6 168 4 0 0 26 45 -4.568 -4.250 -2.265 -0.520 IL 168 168 5 168 4 1 1 29 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 169 169 6 169 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 25 - U - - - ML 170 169 6 172 3 1 1 24 43 -8.319 -0.040 -5.348 -0.707 0.067 -1.600 1.007 D 171 169 6 172 3 0 0 23 42 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 26 - A - - - ML 173 172 3 175 3 1 1 23 42 -8.295 -0.016 -6.949 1.365 -1.501 -1.532 -0.463 D 174 172 3 175 3 0 0 22 41 -6.432 -1.239 -0.824 IL 175 175 3 175 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 27 - G - - - ML 176 175 3 178 3 1 1 22 41 -8.319 -0.024 -6.196 -0.224 -2.179 1.376 -1.615 D 177 175 3 178 3 0 0 21 40 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 28 - u - - - ML 179 178 3 181 3 1 1 21 40 -8.311 -0.016 -6.965 0.044 -0.414 -1.264 0.850 D 180 178 3 181 3 0 0 20 39 -6.268 -1.781 -0.523 IL 181 181 3 181 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 29 - A - - - ML 182 181 3 184 3 1 1 20 38 -8.311 -0.170 -3.211 1.834 -3.073 -2.637 -2.688 D 183 181 3 184 3 0 0 19 38 -6.268 -1.781 -0.523 IL 184 184 3 184 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 30 - A - - - ML 185 184 3 187 3 1 1 19 37 -8.159 -0.018 -6.813 1.304 -1.693 -0.362 -1.172 D 186 184 3 187 3 0 0 18 36 -7.340 -0.530 -1.731 IL 187 187 3 187 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 31 - g - - - ML 188 187 3 190 3 1 1 17 36 -8.319 -0.016 -6.973 0.051 -1.242 0.737 -0.194 D 189 187 3 190 3 0 0 17 36 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 32 - C - - - ML 191 190 3 193 3 1 1 16 34 -8.319 -0.016 -6.973 -1.623 1.643 -2.721 -1.316 D 192 190 3 193 3 0 0 16 34 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 33 - A - - - ML 194 193 3 196 3 1 1 15 33 -8.319 -0.016 -6.973 1.836 -3.090 -2.652 -2.706 D 195 193 3 196 3 0 0 15 33 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 34 - C - - - ML 197 196 3 199 3 1 1 13 31 -8.319 -0.016 -6.973 -1.520 1.620 -2.653 -1.259 D 198 196 3 199 3 0 0 13 32 -6.174 -1.687 -0.566 IL 199 199 3 199 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 35 - A - - - ML 200 199 3 202 2 1 1 1 1 * 0.000 1.147 -1.756 0.082 -1.213 D 201 199 3 202 2 0 0 0 0 * 0.000 IL 202 202 3 202 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 57 ] - - - - - - E 203 202 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Bacilli-1 ACC RF02931 DESC Bacilli-1 RNA LENG 65 MAXL 143 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 10:32:53 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02931/CM NSEQ 145 EFFN 4.473724 CKSUM 929998263 STATS LOCAL MSV -7.8028 0.71896 STATS LOCAL VITERBI -8.6474 0.71896 STATS LOCAL FORWARD -3.2901 0.71896 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.17244 1.61505 1.41431 1.39266 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 0.00000 * 1 0.06642 4.04057 3.69656 3.82272 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 2 2.70752 1.52273 2.47878 0.45992 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 3 3.05061 1.12338 2.84824 0.56292 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 4 3.08471 0.39728 2.86536 1.49099 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 5 0.57289 2.75105 1.21588 2.57972 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 6 3.17011 1.32275 2.96292 0.44639 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 7 1.25207 2.95209 0.50987 2.79226 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.03524 4.29799 3.86200 1.46634 0.26236 1.09861 0.40547 8 3.46321 4.42543 0.06406 3.97619 8 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02778 4.29053 4.29053 1.46634 0.26236 0.82997 0.57281 9 2.34546 2.10536 3.00654 0.31070 9 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 10 1.79668 3.33154 0.29172 2.96749 10 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 11 0.06642 4.04057 3.69656 3.82272 11 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 12 3.03304 0.58409 2.75969 1.10592 12 C - - > 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 13 0.49647 3.12654 1.22467 2.92624 13 A - - > 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 14 2.81044 1.36787 2.49903 0.50583 14 U - - > 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 15 1.68424 3.02782 0.34603 2.83867 15 G - - > 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 16 1.49350 3.00708 0.40704 2.80744 16 G - - > 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 17 0.53821 2.48652 1.39192 2.47206 17 A - - > 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 18 2.09666 0.60107 1.97370 1.66092 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 19 0.61299 3.10051 1.02555 2.90694 19 A - - < 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 20 2.87432 0.68254 2.64045 1.00271 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 21 0.46081 3.27728 1.25699 3.05793 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 22 3.55088 2.02664 3.36623 0.21691 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 23 0.49142 3.03838 1.26673 2.83736 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 24 1.57359 3.09984 0.36356 2.94803 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 25 2.04788 1.30266 2.72392 0.62817 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04716 4.29799 3.42739 1.46634 0.26236 1.09861 0.40547 26 0.36085 2.66042 2.70484 1.79506 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02811 4.27893 4.27893 1.46634 0.26236 0.60835 0.78580 27 1.61075 3.22191 0.35245 2.85737 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03424 4.29799 3.90894 1.46634 0.26236 1.09861 0.40547 28 1.36716 1.70355 2.39804 0.75027 28 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02775 4.29150 4.29150 1.46634 0.26236 1.24576 0.33929 29 0.06725 4.02863 3.68542 3.80986 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.15230 4.29150 2.05894 1.46634 0.26236 1.24576 0.33929 30 0.40575 2.84694 1.63612 2.51622 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03137 4.17057 4.17057 1.46634 0.26236 0.18573 1.77489 31 1.39633 2.41741 0.78308 1.57819 31 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 32 2.85932 0.15995 3.73735 2.70776 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 33 0.06642 4.04057 3.69656 3.82272 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 34 2.76689 0.17202 3.68730 2.65722 34 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 35 0.51935 2.93171 1.28584 2.58538 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 36 3.18491 0.41632 2.91246 1.40730 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 37 3.06053 1.41574 2.83493 0.42822 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 38 0.25775 3.52698 1.82553 3.30537 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 39 3.27228 1.56322 3.06973 0.34788 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 40 1.18513 2.81176 0.57544 2.63479 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 41 3.13806 1.22126 2.89936 0.49969 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 42 1.91293 2.17346 0.53446 1.88006 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 43 2.92371 4.09479 0.10025 3.68912 43 G - - : 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 44 2.74343 0.35362 3.37309 1.61331 44 C - - : 1.38629 1.38629 1.38629 1.38629 0.04637 3.45097 4.29799 0.71041 0.67617 1.09861 0.40547 45 3.38303 3.22411 3.92181 0.09821 46 U - - : 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 46 3.38303 3.22411 3.92181 0.09821 47 U - - : 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 47 3.11006 4.09418 0.09420 3.55332 48 G - - : 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 48 3.47574 4.43913 0.06322 3.98895 49 G - - : 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 49 3.78620 0.08099 4.31496 3.17607 50 C - - : 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 50 0.06642 4.04057 3.69656 3.82272 51 A - - : 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 51 1.79256 3.32902 0.29293 2.96498 52 G - - : 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 52 0.10038 3.73049 3.16814 3.52544 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 53 1.65706 2.97740 0.39470 2.47111 54 G - - : 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 54 2.86416 0.23226 2.85419 2.37918 55 C - - : 1.38629 1.38629 1.38629 1.38629 0.29293 1.42574 4.29799 0.10954 2.26575 1.09861 0.40547 55 2.29866 2.51332 2.48316 0.30771 57 U - - : 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 56 0.13338 3.53234 2.82388 3.31711 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 57 0.11547 3.53090 3.37078 3.09206 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 58 0.60324 2.16681 1.62798 1.95125 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 59 0.18251 3.15223 3.10370 2.53596 61 A - - : 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 60 0.10036 3.73060 3.16832 3.52555 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 61 2.99330 0.24507 3.60611 1.96559 63 C - - : 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 62 2.83176 2.31562 3.35072 0.21403 64 U - - : 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 63 1.87556 2.09042 0.84302 1.22865 65 g - - : 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 64 2.37592 1.11302 2.94757 0.64238 66 U - - : 1.38629 1.38629 1.38629 1.38629 0.02757 4.29799 4.29799 1.46634 0.26236 1.09861 0.40547 65 2.71611 2.70276 2.96370 0.20430 67 U - - : 1.38629 1.38629 1.38629 1.38629 0.01388 4.28430 * 1.46634 0.26236 0.00000 * //