INFERNAL1/a [1.1.4 | Dec 2020] NAME Bacilli-1 ACC RF02931 DESC Bacilli-1 RNA STATES 204 NODES 58 CLEN 65 W 80 ALPH RNA RF no CONS yes MAP yes DATE Mon Oct 1 19:48:08 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 145 EFFN 3.004608 CKSUM 929998263 NULL 0.000 0.000 0.000 0.000 GA 55.60 TC 55.60 NC 36.60 EFP7GF -10.7724 0.71894 ECMLC 0.70181 -6.18775 2.34947 1600000 480006 0.002500 ECMGC 0.42932 -15.69192 -3.02154 1600000 92140 0.004341 ECMLI 0.68054 -4.78659 3.54421 1600000 347854 0.003450 ECMGI 0.43629 -12.08293 -0.09341 1600000 74788 0.005348 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 80 99 -7.332 -7.539 -0.041 -5.954 IL 1 1 2 1 4 1 27 84 104 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 26 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 26 80 100 -8.694 -0.015 -7.012 1.837 -3.100 -2.662 -2.717 D 4 2 3 5 3 0 21 79 98 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 25 81 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 67 - U - - MR 6 5 3 8 3 1 25 79 99 -8.694 -0.015 -7.012 -1.423 -1.480 -1.921 1.587 D 7 5 3 8 3 0 20 78 97 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 24 80 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 66 - U - - MR 9 8 3 11 3 1 24 78 98 -8.694 -0.015 -7.012 -1.037 0.285 -1.830 1.010 D 10 8 3 11 3 0 19 77 96 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 23 79 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 65 - g - - MR 12 11 3 14 3 1 24 77 97 -8.694 -0.015 -7.012 -0.490 -0.890 0.664 0.218 D 13 11 3 14 3 0 18 76 95 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 23 78 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 64 - U - - MR 15 14 3 17 3 1 23 76 96 -8.694 -0.015 -7.012 -1.572 -1.118 -2.317 1.586 D 16 14 3 17 3 0 17 75 94 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 22 77 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 63 - C - - MR 18 17 3 20 3 1 22 75 94 -8.694 -0.015 -7.012 -1.744 1.528 -2.604 -0.614 D 19 17 3 20 3 0 16 74 93 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 21 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 62 - A - - MR 21 20 3 23 3 1 21 74 93 -8.694 -0.015 -7.012 1.781 -2.778 -2.142 -2.398 D 22 20 3 23 3 0 16 73 92 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 20 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 61 - A - - MR 24 23 3 26 3 1 20 73 92 -8.694 -0.015 -7.012 1.645 -2.112 -1.998 -1.359 D 25 23 3 26 3 0 15 72 91 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 19 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 60 - A - - MR 27 26 3 29 3 1 19 72 91 -8.694 -0.015 -7.012 1.035 -1.011 -0.320 -0.614 D 28 26 3 29 3 0 14 71 90 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 19 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 59 - A - - MR 30 29 3 32 3 1 19 71 90 -8.694 -0.015 -7.012 1.755 -2.558 -2.307 -1.981 D 31 29 3 32 3 0 13 70 89 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 18 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 58 - A - - MR 33 32 3 35 3 1 18 70 89 -8.694 -0.015 -7.012 1.729 -2.553 -1.780 -2.159 D 34 32 3 35 3 0 12 68 88 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 17 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 57 - U - - MR 36 35 3 38 3 1 17 69 88 -2.373 -0.323 -7.012 -0.963 -1.259 -1.375 1.424 D 37 35 3 38 3 0 12 67 86 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 16 69 88 -2.763 -0.284 -5.002 0.000 0.000 0.000 0.000 [ MATR 13 ] - 55 - C - - MR 39 38 3 41 3 1 16 68 87 -8.694 -0.015 -7.012 -1.514 1.513 -1.824 -0.963 D 40 38 3 41 3 0 11 66 85 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 15 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 54 - G - - MR 42 41 3 44 3 1 15 67 86 -8.694 -0.015 -7.012 -0.224 -1.909 1.292 -1.221 D 43 41 3 44 3 0 10 65 84 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 14 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 53 - A - - MR 45 44 3 47 3 1 14 66 85 -8.694 -0.015 -7.012 1.781 -2.778 -2.141 -2.398 D 46 44 3 47 3 0 10 64 83 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 14 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 52 - G - - MR 48 47 3 50 3 1 13 65 84 -8.694 -0.015 -7.012 -0.465 -2.338 1.478 -1.776 D 49 47 3 50 3 0 9 63 82 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 13 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 51 - A - - MR 51 50 3 53 3 1 12 64 83 -8.694 -0.015 -7.012 1.837 -3.100 -2.662 -2.717 D 52 50 3 53 3 0 8 62 81 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 12 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 50 - C - - MR 54 53 3 56 3 1 12 63 82 -8.694 -0.015 -7.012 -2.622 1.795 -3.447 -1.865 D 55 53 3 56 3 0 8 61 80 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 11 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 49 - G - - MR 57 56 3 59 3 1 11 62 81 -8.694 -0.015 -7.012 -2.325 -3.645 1.847 -3.028 D 58 56 3 59 3 0 7 60 79 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 10 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 48 - G - - MR 60 59 3 62 3 1 10 61 80 -8.694 -0.015 -7.012 -1.953 -3.275 1.796 -2.586 D 61 59 3 62 3 0 6 59 78 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 10 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 47 - U - - MR 63 62 3 65 3 1 9 60 79 -8.694 -0.015 -7.012 -2.171 -2.051 -2.931 1.768 D 64 62 3 65 3 0 6 58 77 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 9 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 46 - U - - MR 66 65 3 68 3 1 8 59 78 -5.289 -0.049 -7.012 -2.171 -2.051 -2.931 1.768 D 67 65 3 68 3 0 5 57 76 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 8 59 79 -2.057 -0.497 -4.296 0.000 0.000 0.000 0.000 [ MATR 23 ] - 44 - C - - MR 69 68 3 71 3 1 7 58 77 -8.694 -0.015 -7.012 -1.421 1.331 -2.284 -0.144 D 70 68 3 71 3 0 5 56 76 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 7 58 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 43 - G - - MR 72 71 3 74 2 1 6 57 76 -8.780 -0.003 -1.769 -3.265 1.785 -2.678 D 73 71 3 74 2 0 5 56 75 -4.432 -0.068 IR 74 74 3 74 2 1 6 58 77 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 25 ] - - - - - - B 75 74 3 76 126 0 5 56 75 [ BEGL 26 ] - - - - - - S 76 75 1 77 4 0 0 29 48 -0.039 -7.040 -6.448 -7.088 [ MATP 27 ] 2 17 u a - - MP 77 76 1 81 6 2 2 29 48 -9.266 -9.206 -0.019 -7.982 -8.262 -8.657 -3.419 -3.389 -3.438 0.211 -2.687 -4.150 1.812 -3.295 -3.449 0.436 -3.921 -1.462 2.946 -2.229 -0.415 -2.383 ML 78 76 1 81 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 79 76 1 81 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 80 76 1 81 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 81 81 5 81 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 3 16 c g - - MP 83 82 6 87 6 2 2 27 46 -9.266 -9.206 -0.019 -7.982 -8.262 -8.657 -3.899 -3.907 -3.777 -0.202 -2.709 -4.338 2.337 -3.430 -3.792 -0.036 -4.181 -1.960 1.795 -4.047 2.180 -2.681 ML 84 82 6 87 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 85 82 6 87 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 86 82 6 87 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 87 87 5 87 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 88 88 6 88 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 4 15 C G - - MP 89 88 6 93 6 2 2 25 44 -9.266 -9.206 -0.019 -7.982 -8.262 -8.657 -4.238 -4.206 -4.028 -0.368 -2.455 -4.525 3.273 -3.567 -4.038 -0.178 -4.384 -2.158 1.495 -4.334 -0.221 -2.872 ML 90 88 6 93 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 91 88 6 93 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 6 93 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 93 93 5 93 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 5 14 a u - - MP 95 94 6 99 6 2 2 23 42 -9.266 -9.206 -0.019 -7.982 -8.262 -8.657 -3.378 -2.073 -2.806 2.874 -3.856 -4.414 0.303 -3.735 -3.491 2.003 -3.986 -0.063 0.050 -3.620 -1.554 -2.395 ML 96 94 6 99 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 97 94 6 99 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 98 94 6 99 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 99 99 5 99 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 100 100 6 100 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 6 13 U A - - MP 101 100 6 105 6 2 2 21 40 -9.266 -9.206 -0.019 -7.982 -8.262 -8.657 -4.177 -4.134 -3.976 -0.343 -2.784 -4.480 2.144 -3.538 -3.990 -0.144 -4.340 -2.102 3.030 -4.282 -0.452 -2.838 ML 102 100 6 105 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 103 100 6 105 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 104 100 6 105 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 105 105 5 105 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 106 106 6 106 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 7 12 G C - - MP 107 106 6 111 4 2 2 19 38 -7.332 -7.539 -0.051 -5.427 -3.900 -2.684 -3.889 2.028 -4.639 -4.636 -0.057 -4.278 -3.925 3.047 -4.337 -0.145 -0.329 -3.934 -2.030 -2.785 ML 108 106 6 111 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 109 106 6 111 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 110 106 6 111 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 111 111 5 111 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 112 112 6 112 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 8 - G - - - ML 113 112 6 115 3 1 1 16 34 -8.315 -0.016 -6.969 -2.306 -3.624 1.845 -3.008 D 114 112 6 115 3 0 0 16 34 -6.285 -1.468 -0.676 IL 115 115 3 115 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 9 - U - - - ML 116 115 3 118 3 1 1 15 33 -8.324 -0.016 -6.978 -1.021 -0.787 -1.888 1.410 D 117 115 3 118 3 0 0 15 33 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 10 - G - - - ML 119 118 3 121 3 1 1 13 31 -8.324 -0.016 -6.978 -0.427 -2.313 1.464 -1.751 D 120 118 3 121 3 0 0 13 32 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 11 - A - - - ML 122 121 3 124 2 1 1 1 1 * 0.000 1.837 -3.100 -2.662 -2.717 D 123 121 3 124 2 0 0 0 0 * 0.000 IL 124 124 3 124 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 37 ] - - - - - - E 125 124 3 -1 0 0 0 0 0 [ BEGR 38 ] - - - - - - S 126 75 1 127 5 0 0 39 58 -7.412 -0.031 -7.228 -7.440 -8.332 IL 127 127 2 127 5 1 1 40 59 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 18 42 c g - - MP 128 127 2 132 6 2 2 39 58 -9.266 -9.206 -0.019 -7.982 -8.262 -8.657 -3.560 -3.336 -3.576 0.845 -2.765 -4.349 2.958 -3.352 -3.539 0.893 -4.023 -0.978 1.199 -3.772 -0.315 -2.402 ML 129 127 2 132 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 2 132 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 2 132 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 19 41 a u - - MP 134 133 6 138 6 2 2 37 56 -9.266 -9.206 -0.019 -7.982 -8.262 -8.657 -3.692 -2.642 -3.747 2.825 -4.426 -4.889 -0.043 -4.013 -3.703 2.277 -4.212 0.280 -0.296 -4.040 -1.968 -2.605 ML 135 133 6 138 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 20 40 c g - - MP 140 139 6 144 6 2 2 35 54 -9.266 -9.206 -0.019 -7.982 -8.262 -8.657 -3.949 -3.897 -3.829 -0.083 -2.729 -4.414 2.858 -3.447 -3.823 0.112 -4.222 -1.838 2.175 -4.092 0.136 -2.676 ML 141 139 6 144 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 21 39 A U - - MP 146 145 6 150 6 2 2 33 52 -9.266 -9.206 -0.019 -7.982 -8.262 -8.657 -3.753 -2.703 -3.832 3.084 -4.564 -5.172 -0.221 -4.041 -3.723 1.868 -4.269 0.369 -0.460 -4.259 -2.134 -2.658 ML 147 145 6 150 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 22 38 U A - - MP 152 151 6 156 6 2 2 31 50 -9.266 -9.206 -0.019 -7.982 -8.262 -8.657 -4.591 -4.561 -4.346 -0.790 -3.109 -4.808 1.342 -3.882 -4.369 -0.592 -4.696 -2.556 3.428 -4.671 -0.516 -3.164 ML 153 151 6 156 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 23 37 a u - - MP 158 157 6 162 6 2 2 29 48 -9.266 -9.206 -0.019 -7.982 -8.262 -8.657 -3.546 -1.530 -3.611 2.978 -4.197 -4.734 0.017 -3.888 -3.596 1.955 -4.113 0.059 -0.219 -3.896 -1.851 -2.520 ML 159 157 6 162 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 24 36 G C - - MP 164 163 6 168 4 2 2 27 46 -7.332 -7.539 -0.041 -5.954 -4.154 -2.809 -4.143 1.584 -4.941 -4.683 -0.274 -4.553 -4.106 3.299 -4.485 -0.343 -0.553 -4.085 -2.270 -3.038 ML 165 163 6 168 4 1 1 28 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 4 1 1 27 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 167 163 6 168 4 0 0 26 45 -4.568 -4.250 -2.265 -0.520 IL 168 168 5 168 4 1 1 29 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 169 169 6 169 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 25 - u - - - ML 170 169 6 172 3 1 1 24 43 -8.324 -0.040 -5.362 -0.707 0.105 -1.601 0.987 D 171 169 6 172 3 0 0 23 42 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 26 - A - - - ML 173 172 3 175 3 1 1 23 42 -8.301 -0.016 -6.955 1.359 -1.495 -1.529 -0.448 D 174 172 3 175 3 0 0 22 41 -6.431 -1.242 -0.822 IL 175 175 3 175 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 27 - G - - - ML 176 175 3 178 3 1 1 22 41 -8.324 -0.024 -6.212 -0.173 -2.154 1.354 -1.590 D 177 175 3 178 3 0 0 21 40 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 28 - u - - - ML 179 178 3 181 3 1 1 21 40 -8.316 -0.016 -6.970 0.058 -0.377 -1.256 0.824 D 180 178 3 181 3 0 0 20 39 -6.266 -1.779 -0.524 IL 181 181 3 181 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 29 - A - - - ML 182 181 3 184 3 1 1 20 38 -8.316 -0.171 -3.199 1.835 -3.084 -2.647 -2.700 D 183 181 3 184 3 0 0 19 38 -6.266 -1.779 -0.524 IL 184 184 3 184 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 30 - A - - - ML 185 184 3 187 3 1 1 19 37 -8.163 -0.018 -6.817 1.281 -1.680 -0.306 -1.154 D 186 184 3 187 3 0 0 18 36 -7.349 -0.526 -1.740 IL 187 187 3 187 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 31 - g - - - ML 188 187 3 190 3 1 1 17 36 -8.324 -0.016 -6.978 0.041 -1.230 0.724 -0.162 D 189 187 3 190 3 0 0 17 36 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 32 - C - - - ML 191 190 3 193 3 1 1 16 34 -8.324 -0.016 -6.978 -1.642 1.647 -2.738 -1.330 D 192 190 3 193 3 0 0 16 34 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 33 - A - - - ML 194 193 3 196 3 1 1 15 33 -8.324 -0.016 -6.978 1.837 -3.100 -2.662 -2.717 D 195 193 3 196 3 0 0 15 33 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 34 - C - - - ML 197 196 3 199 3 1 1 13 31 -8.324 -0.016 -6.978 -1.542 1.626 -2.672 -1.274 D 198 196 3 199 3 0 0 13 32 -6.174 -1.687 -0.566 IL 199 199 3 199 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 35 - A - - - ML 200 199 3 202 2 1 1 1 1 * 0.000 1.129 -1.756 0.117 -1.211 D 201 199 3 202 2 0 0 0 0 * 0.000 IL 202 202 3 202 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 57 ] - - - - - - E 203 202 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Bacilli-1 ACC RF02931 DESC Bacilli-1 RNA LENG 65 MAXL 143 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Oct 1 19:48:08 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 145 EFFN 4.517975 CKSUM 929998263 STATS LOCAL MSV -7.7954 0.71894 STATS LOCAL VITERBI -8.6464 0.71894 STATS LOCAL FORWARD -3.2928 0.71894 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.17175 1.61484 1.41506 1.39295 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 0.00000 * 1 0.06556 4.05325 3.70841 3.83636 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 2 2.71382 1.51556 2.48503 0.46091 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 3 3.04012 1.12216 2.83669 0.56567 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 4 3.09655 0.39441 2.87766 1.49409 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 5 0.57488 2.75921 1.20840 2.58747 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 6 3.16985 1.29992 2.96226 0.45613 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 7 1.22199 2.95314 0.52443 2.79219 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.03531 4.30279 3.85537 1.46634 0.26236 1.09861 0.40547 8 3.47446 4.43773 0.06331 3.98765 8 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02765 4.29513 4.29513 1.46634 0.26236 0.82354 0.57781 9 2.33713 2.04971 2.99504 0.32215 9 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 10 1.78026 3.32872 0.29568 2.96533 10 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 11 0.06556 4.05325 3.70841 3.83636 11 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 12 3.03300 0.60031 2.76036 1.07904 12 C - - > 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 13 0.50653 3.12597 1.20425 2.92614 13 A - - > 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 14 2.81833 1.36093 2.50741 0.50684 14 U - - > 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 15 1.68602 3.03996 0.34378 2.85034 15 G - - > 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 16 1.46372 2.99615 0.41905 2.79729 16 G - - > 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 17 0.53894 2.49367 1.38584 2.47797 17 A - - > 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 18 2.09375 0.60099 1.97316 1.66341 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 19 0.62682 3.09583 1.00625 2.90253 19 A - - < 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 20 2.87673 0.69713 2.64283 0.98214 20 c - - < 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 21 0.45781 3.29056 1.25992 3.07000 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 22 3.56853 2.03975 3.38525 0.21335 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 23 0.48963 3.05074 1.26613 2.84903 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 24 1.56392 3.10320 0.36602 2.95090 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 25 2.04961 1.27091 2.72707 0.64392 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04679 4.30279 3.43640 1.46634 0.26236 1.09861 0.40547 26 0.36395 2.65846 2.70486 1.78298 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02796 4.28397 4.28397 1.46634 0.26236 0.61027 0.78352 27 1.56908 3.20628 0.36680 2.84205 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03395 4.30279 3.91946 1.46634 0.26236 1.09861 0.40547 28 1.35573 1.67128 2.39150 0.77058 28 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02761 4.29645 4.29645 1.46634 0.26236 1.24334 0.34027 29 0.06635 4.04160 3.69753 3.82383 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.15333 4.29645 2.05154 1.46634 0.26236 1.24334 0.34027 30 0.42117 2.84041 1.59099 2.50597 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03125 4.17437 4.17437 1.46634 0.26236 0.18389 1.78396 31 1.40460 2.40988 0.79225 1.55172 31 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 32 2.87731 0.15704 3.75390 2.72395 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 33 0.06556 4.05325 3.70841 3.83636 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 34 2.78706 0.16856 3.70543 2.67470 34 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 35 0.53120 2.93705 1.25876 2.58926 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 36 3.18794 0.41875 2.91567 1.39955 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 37 3.07209 1.41442 2.84716 0.42679 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 38 0.25366 3.54586 1.83792 3.32285 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 39 3.28411 1.56299 3.08276 0.34646 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 40 1.15927 2.81425 0.58919 2.63723 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 41 3.13464 1.20930 2.89481 0.50622 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 42 1.91498 2.17372 0.53466 1.87710 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 43 2.94120 4.11267 0.09843 3.70609 43 G - - : 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 44 2.72308 0.36832 3.35444 1.57259 44 C - - : 1.38629 1.38629 1.38629 1.38629 0.05641 3.18638 4.30279 0.56168 0.84455 1.09861 0.40547 45 3.39544 3.23476 3.93446 0.09701 46 U - - : 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 46 3.39544 3.23476 3.93446 0.09701 47 U - - : 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 47 3.12651 4.11240 0.09252 3.57083 48 G - - : 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 48 3.48729 4.45177 0.06245 4.00070 49 G - - : 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 49 3.80007 0.07992 4.32721 3.18844 50 C - - : 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 50 0.06556 4.05325 3.70841 3.83636 51 A - - : 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 51 1.81200 3.34811 0.28640 2.98463 52 G - - : 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 52 0.09862 3.74661 3.18467 3.54312 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 53 1.61884 2.96679 0.40758 2.46343 54 G - - : 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 54 2.88463 0.22748 2.87207 2.39689 55 C - - : 1.38629 1.38629 1.38629 1.38629 0.29540 1.41783 4.30279 0.10820 2.27741 1.09861 0.40547 55 2.31190 2.52344 2.49739 0.30321 57 U - - : 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 56 0.13079 3.54945 2.84231 3.33626 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 57 0.11372 3.54534 3.38411 3.10712 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 58 0.60297 2.17531 1.61861 1.95850 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 59 0.17903 3.16947 3.11948 2.55473 61 A - - : 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 60 0.09860 3.74671 3.18486 3.54323 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 61 3.01423 0.23978 3.62623 1.98416 63 C - - : 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 62 2.84524 2.32831 3.36412 0.21093 64 U - - : 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 63 1.88684 2.10618 0.82087 1.24932 65 g - - : 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 64 2.38777 1.13295 2.95815 0.62704 66 U - - : 1.38629 1.38629 1.38629 1.38629 0.02743 4.30279 4.30279 1.46634 0.26236 1.09861 0.40547 65 2.72831 2.71251 2.97737 0.20166 67 U - - : 1.38629 1.38629 1.38629 1.38629 0.01381 4.28917 * 1.46634 0.26236 0.00000 * //