INFERNAL1/a [1.1.5 | Sep 2023] NAME Actino-ugpB ACC RF02927 DESC Actino-ugpB RNA STATES 192 NODES 56 CLEN 61 W 239 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 11 02:41:34 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02927/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 12 EFFN 5.581055 CKSUM 2770856126 NULL 0.000 0.000 0.000 0.000 GA 42.50 TC 47.80 NC 38.80 EFP7GF -13.0960 0.71906 ECMLC 0.55536 -9.52338 1.56674 1600000 567565 0.002114 ECMGC 0.35080 -21.87661 -5.82354 1600000 111627 0.003583 ECMLI 0.54526 -7.91521 2.93590 1600000 445427 0.002694 ECMGI 0.36650 -17.37227 -3.10836 1600000 74549 0.005366 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 239 465 -7.974 -8.181 -0.026 -6.596 IL 1 1 2 1 4 2 27 241 467 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 26 241 467 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 2 26 240 466 -8.937 -0.010 -7.591 -3.382 -4.807 1.930 -4.124 D 4 2 3 5 3 0 21 237 463 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 26 240 466 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 2 26 239 465 -8.937 -0.010 -7.591 -3.282 -2.999 -4.066 1.892 D 7 5 3 8 3 0 21 236 462 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 25 239 465 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 2 25 238 464 -8.937 -0.010 -7.591 -3.895 1.913 -4.599 -2.979 D 10 8 3 11 3 0 20 235 461 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 24 238 464 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 2 24 237 463 -8.937 -0.010 -7.591 -1.674 -1.170 1.590 -2.107 D 13 11 3 14 3 0 19 234 460 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 23 237 463 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 23 236 462 -8.937 -0.101 -3.932 1.928 -4.239 -3.719 -3.950 D 16 14 3 17 3 0 19 234 460 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 23 236 462 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - u - - - ML 18 17 3 20 3 1 23 235 461 -8.847 -0.011 -7.502 0.470 -1.168 -0.457 0.527 D 19 17 3 20 3 0 18 233 459 -7.241 -0.576 -1.633 IL 20 20 3 20 3 1 21 235 461 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 22 234 460 -8.937 -0.010 -7.591 1.268 -0.927 -0.641 -1.235 D 22 20 3 23 3 0 16 231 457 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 21 234 460 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 21 233 459 -8.937 -0.010 -7.591 1.611 -2.769 -0.713 -2.407 D 25 23 3 26 3 0 16 230 456 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 20 233 459 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 27 26 3 29 3 1 20 232 458 -8.937 -0.010 -7.591 -3.382 -4.807 1.930 -4.124 D 28 26 3 29 3 0 15 230 456 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 19 232 458 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 30 29 3 32 3 1 19 231 457 -9.281 -0.010 -7.598 -0.719 -3.122 1.639 -2.615 D 31 29 3 32 3 0 14 229 455 -5.620 -0.734 -1.403 IL 32 32 3 32 3 1 18 231 457 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 88 - G - - MR 33 32 3 35 3 1 18 230 456 -9.281 -0.010 -7.598 -1.874 -2.819 1.636 -1.064 D 34 32 3 35 3 0 13 227 453 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 17 230 456 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 87 - A - - MR 36 35 3 38 3 1 17 229 455 -9.281 -0.010 -7.598 1.580 -0.943 -2.267 -1.824 D 37 35 3 38 3 0 12 226 452 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 16 229 455 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 86 - A - - MR 39 38 3 41 3 1 17 228 454 -9.281 -0.010 -7.598 1.213 -0.761 -1.697 -0.354 D 40 38 3 41 3 0 11 225 451 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 16 228 454 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 85 - a - - MR 42 41 3 44 3 1 16 227 453 -9.281 -0.010 -7.598 0.812 -0.526 -0.669 -0.118 D 43 41 3 44 3 0 10 224 450 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 15 227 453 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 84 - G - - MR 45 44 3 47 3 1 15 226 452 -9.281 -0.010 -7.598 -0.950 -3.264 1.691 -2.751 D 46 44 3 47 3 0 10 223 449 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 14 226 452 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 83 - a - - MR 48 47 3 50 3 1 14 225 451 -9.281 -0.010 -7.598 0.929 -0.212 -0.560 -0.853 D 49 47 3 50 3 0 9 222 448 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 13 225 451 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 82 - G - - MR 51 50 3 53 3 1 13 224 450 -9.281 -0.010 -7.598 -0.674 -3.095 1.628 -2.588 D 52 50 3 53 3 0 8 221 447 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 12 224 450 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 81 - G - - MR 54 53 3 56 3 1 12 223 449 -9.281 -0.010 -7.598 0.254 -1.418 1.037 -1.390 D 55 53 3 56 3 0 8 220 446 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 12 223 449 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 80 - a - - MR 57 56 3 59 3 1 11 222 448 -9.281 -0.010 -7.598 0.997 0.353 -1.920 -1.113 D 58 56 3 59 3 0 7 219 445 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 11 222 448 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 79 - U - - MR 60 59 3 62 3 1 10 221 447 -9.281 -0.010 -7.598 -1.143 -0.709 -0.886 1.260 D 61 59 3 62 3 0 6 218 444 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 10 221 447 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 78 - A - - MR 63 62 3 65 3 1 9 220 446 -9.281 -0.010 -7.598 1.568 -2.146 -2.227 -0.748 D 64 62 3 65 3 0 6 218 443 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 9 220 446 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 77 - C - - MR 66 65 3 68 3 1 8 219 445 -9.281 -0.010 -7.598 -3.895 1.913 -4.599 -2.979 D 67 65 3 68 3 0 5 217 443 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 8 219 445 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 76 - G - - MR 69 68 3 71 3 1 7 218 444 -9.281 -0.010 -7.598 -3.382 -4.807 1.930 -4.124 D 70 68 3 71 3 0 5 216 442 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 7 218 444 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 75 - G - - MR 72 71 3 74 3 1 6 217 443 -9.281 -0.010 -7.598 -3.382 -4.807 1.930 -4.124 D 73 71 3 74 3 0 4 215 441 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 7 217 443 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 74 - C - - MR 75 74 3 77 3 1 6 216 442 -9.281 -0.010 -7.598 -3.895 1.913 -4.599 -2.979 D 76 74 3 77 3 0 4 214 440 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 6 216 442 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 73 - u - - MR 78 77 3 80 2 1 5 215 441 -9.465 -0.002 0.227 0.042 -1.487 0.530 D 79 77 3 80 2 0 4 214 440 -4.432 -0.068 IR 80 80 3 80 2 1 5 215 441 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 27 ] - - - - - - B 81 80 3 82 126 0 4 214 440 [ BEGL 28 ] - - - - - - S 82 81 1 83 4 0 0 194 420 -0.029 -7.441 -6.848 -7.489 [ MATP 29 ] 11 49 g c - - MP 83 82 1 87 6 2 2 194 420 -9.588 -9.528 -0.015 -8.304 -8.584 -8.979 -4.457 -3.125 -4.449 2.622 -5.553 -5.383 -0.831 -4.823 -4.430 2.909 -4.870 -0.642 -1.075 -4.613 -2.811 -3.283 ML 84 82 1 87 6 1 1 190 416 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 85 82 1 87 6 1 1 190 416 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 86 82 1 87 6 0 0 182 408 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 87 87 5 87 6 1 1 192 418 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 88 88 6 88 5 1 1 192 418 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 12 48 C G - - MP 89 88 6 93 6 2 2 192 418 -9.588 -9.528 -0.015 -8.304 -8.584 -8.979 -6.676 -6.763 -5.963 -2.948 -4.376 -6.096 3.893 -5.431 -6.186 -2.887 -6.108 -4.853 -1.190 -6.604 -2.241 -4.989 ML 90 88 6 93 6 1 1 188 414 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 91 88 6 93 6 1 1 187 413 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 6 93 6 0 0 179 405 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 93 93 5 93 6 1 1 190 416 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 1 190 416 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 13 47 A U - - MP 95 94 6 99 6 2 2 190 416 -9.588 -9.528 -0.015 -8.304 -8.584 -8.979 -4.633 -3.368 -4.749 3.470 -6.040 -6.705 -1.522 -4.868 -4.473 1.656 -5.071 -0.732 -1.717 -5.538 -3.446 -3.444 ML 96 94 6 99 6 1 1 185 411 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 97 94 6 99 6 1 1 184 410 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 98 94 6 99 6 0 0 176 402 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 99 99 5 99 6 1 1 188 414 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 100 100 6 100 5 1 1 188 414 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 14 46 C G - - MP 101 100 6 105 6 2 2 188 414 -9.588 -9.528 -0.015 -8.304 -8.584 -8.979 -4.816 -4.581 -4.609 1.161 -3.407 -5.173 3.413 -4.126 -4.575 -0.553 -4.939 -2.331 0.315 -4.966 -1.035 -3.397 ML 102 100 6 105 6 1 1 181 407 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 103 100 6 105 6 1 1 180 406 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 104 100 6 105 6 0 0 172 398 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 105 105 5 105 6 1 1 186 412 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 106 106 6 106 5 1 1 186 412 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 15 45 C G - - MP 107 106 6 111 4 2 2 186 412 -7.974 -2.147 -0.396 -6.596 -6.676 -6.763 -5.963 -2.948 -4.376 -6.096 3.893 -5.431 -6.186 -2.887 -6.108 -4.853 -1.190 -6.604 -2.241 -4.989 ML 108 106 6 111 4 1 1 173 399 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 109 106 6 111 4 1 1 172 398 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 110 106 6 111 4 0 0 169 395 -4.568 -4.250 -2.265 -0.520 IL 111 111 5 111 4 1 1 188 414 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 112 112 6 112 3 1 1 202 428 -0.118 -3.726 -8.502 0.000 0.000 0.000 0.000 [ MATL 34 ] 16 - U - - - ML 113 112 6 115 3 1 1 16 34 -8.937 -0.010 -7.591 -0.215 -1.305 -0.517 1.025 D 114 112 6 115 3 0 0 16 34 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 17 - a - - - ML 116 115 3 118 3 1 1 14 33 -8.937 -0.010 -7.591 0.930 -0.193 -0.587 -0.853 D 117 115 3 118 3 0 0 15 33 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 18 - G - - - ML 119 118 3 121 3 1 1 12 31 -8.937 -0.010 -7.591 -1.018 -0.949 1.182 -0.476 D 120 118 3 121 3 0 0 13 32 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 19 - g - - - ML 122 121 3 124 2 1 1 1 1 * 0.000 0.326 -0.612 0.447 -0.456 D 123 121 3 124 2 0 0 0 0 * 0.000 IL 124 124 3 124 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 38 ] - - - - - - E 125 124 3 -1 0 0 0 0 0 [ BEGR 39 ] - - - - - - S 126 81 1 127 3 0 0 36 58 -8.937 -0.010 -7.591 IL 127 127 2 127 3 1 1 39 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 50 - G - - - ML 128 127 2 130 3 1 1 36 58 -8.937 -0.010 -7.591 -3.382 -4.807 1.930 -4.124 D 129 127 2 130 3 0 0 34 56 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 1 38 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 51 - G - - - ML 131 130 3 133 5 1 1 35 57 -7.973 -0.021 -7.789 -8.001 -8.893 -1.674 -1.170 1.590 -2.107 D 132 130 3 133 5 0 0 33 55 -4.959 -0.803 -4.221 -2.596 -2.508 IL 133 133 3 133 5 1 1 35 57 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 52 72 C G - - MP 134 133 3 138 6 2 2 34 56 -9.588 -9.528 -0.015 -8.304 -8.584 -8.979 -5.345 -5.384 -4.907 -1.477 -3.421 -5.224 3.558 -4.270 -4.946 -1.339 -5.181 -3.370 1.313 -5.321 -1.083 -3.740 ML 135 133 3 138 6 1 1 32 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 3 138 6 1 1 32 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 3 138 6 0 0 29 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 33 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 33 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 53 71 G C - - MP 140 139 6 144 6 2 2 32 54 -9.588 -9.528 -0.015 -8.304 -8.584 -8.979 -4.540 -3.136 -4.512 2.219 -5.609 -5.203 -0.821 -4.945 -4.500 3.177 -4.891 -0.696 -1.074 -4.533 -2.817 -3.374 ML 141 139 6 144 6 1 1 30 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 30 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 28 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 31 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 31 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 54 70 G U - - MP 146 145 6 150 6 2 2 30 52 -9.588 -9.528 -0.015 -8.304 -8.584 -8.979 -4.702 -3.326 -4.919 0.987 -6.738 -7.225 -2.146 -4.955 -4.470 1.046 -5.064 3.467 -2.222 -5.961 -4.041 -3.524 ML 147 145 6 150 6 1 1 28 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 28 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 27 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 29 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 29 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 55 69 c g - - MP 152 151 6 156 6 2 2 28 50 -9.588 -9.528 -0.115 -8.304 -8.584 -3.872 -4.342 -4.323 -4.238 -0.525 0.373 -4.835 2.743 -3.869 -4.229 -0.379 -4.637 -2.292 2.396 -4.500 -0.817 -3.095 ML 153 151 6 156 6 1 1 27 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 27 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 26 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 27 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 27 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 56 68 c g - - MP 158 157 6 162 6 2 2 26 48 -9.490 -9.429 -0.016 -8.205 -8.485 -8.880 -3.924 -3.799 -3.895 0.006 -2.966 -4.589 2.749 -3.614 -3.875 1.375 -4.330 -1.691 0.909 -4.105 1.437 -2.737 ML 159 157 6 162 6 1 1 26 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 26 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 26 48 -10.409 -9.107 -4.904 -5.586 -5.604 -0.116 IL 162 162 5 162 6 1 1 26 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 25 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 57 67 c g - - MP 164 163 6 168 4 2 2 23 45 -7.792 -7.999 -0.029 -6.413 -0.546 -3.167 -3.338 0.400 -2.778 -4.139 2.883 -3.300 -3.339 1.316 -3.853 -1.206 1.020 -3.507 -0.524 -2.305 ML 165 163 6 168 4 1 1 26 48 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 4 1 1 25 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 167 163 6 168 4 0 0 26 48 -5.870 -0.700 -3.567 -1.821 IL 168 168 5 168 4 1 1 27 49 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 169 169 6 169 3 1 1 27 49 -1.199 -0.898 -5.174 0.000 0.000 0.000 0.000 [ MATL 48 ] 58 - A - - - ML 170 169 6 172 3 1 1 19 38 -8.937 -0.010 -7.591 1.590 -0.984 -2.282 -1.848 D 171 169 6 172 3 0 0 19 37 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 59 - u - - - ML 173 172 3 175 3 1 1 18 36 -8.937 -0.010 -7.591 0.235 -0.563 -1.510 0.844 D 174 172 3 175 3 0 0 18 36 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 60 - c - - - ML 176 175 3 178 3 1 1 17 35 -8.937 -0.010 -7.591 0.215 0.462 -1.595 0.177 D 177 175 3 178 3 0 0 17 35 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 61 - G - - - ML 179 178 3 181 3 1 1 15 34 -8.937 -0.010 -7.591 -1.692 -1.213 1.600 -2.132 D 180 178 3 181 3 0 0 16 34 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 62 - u - - - ML 182 181 3 184 3 1 1 14 32 -8.937 -0.010 -7.591 0.412 -0.447 -0.858 0.469 D 183 181 3 184 3 0 0 14 33 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 63 - a - - - ML 185 184 3 187 3 1 1 12 31 -8.937 -0.402 -2.051 0.279 0.021 -0.087 -0.267 D 186 184 3 187 3 0 0 13 32 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 64 - G - - - ML 188 187 3 190 2 1 1 1 1 * 0.000 -1.051 -0.740 1.335 -1.335 D 189 187 3 190 2 0 0 0 0 * 0.000 IL 190 190 3 190 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 55 ] - - - - - - E 191 190 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Actino-ugpB ACC RF02927 DESC Actino-ugpB RNA LENG 61 MAXL 345 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 11 02:41:34 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02927/CM NSEQ 12 EFFN 8.563477 CKSUM 2770856126 STATS LOCAL MSV -7.7448 0.71906 STATS LOCAL VITERBI -8.5930 0.71906 STATS LOCAL FORWARD -3.5248 0.71906 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.44667 1.47275 1.02108 1.74213 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 0.00000 * 1 4.19301 5.23587 0.02995 4.70174 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 2 4.19256 3.94208 4.74556 0.04417 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 3 4.59148 0.03682 4.99537 3.95067 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 4 2.94841 2.17695 0.22698 3.29000 4 G - - : 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 5 0.02884 4.86554 4.48275 4.66497 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.08590 4.82767 2.59953 1.46634 0.26236 1.09861 0.40547 6 1.03564 2.37208 1.71383 0.99010 6 u - - : 1.38629 1.38629 1.38629 1.38629 0.01730 4.75907 4.75907 1.46634 0.26236 0.19512 1.73012 7 0.43759 2.07563 1.86616 2.60077 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 8 0.22854 3.75973 1.87615 3.58135 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 9 4.19301 5.23587 0.02995 4.70174 9 G - - : 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 10 1.94293 3.93271 0.21110 3.59609 10 G - - : 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 11 0.81947 3.66972 0.68791 3.46658 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 12 4.98702 0.03960 4.93614 3.69629 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 13 0.27562 4.25844 1.57223 3.95449 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 14 1.89562 0.30060 3.36795 2.59101 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 15 4.94474 0.04035 4.90898 3.68723 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 16 1.59540 2.51163 1.74519 0.61355 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 17 0.67955 1.48103 1.82563 2.25727 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 18 2.37876 2.09762 0.47714 1.80772 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 19 1.15818 1.82428 1.01360 1.82201 19 g - - _ 1.38629 1.38629 1.38629 1.38629 0.28967 1.41271 4.82767 2.98037 0.05211 1.09861 0.40547 20 3.94438 5.05010 0.03479 4.77764 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 21 2.86521 3.57417 0.27941 1.84036 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 22 4.12315 1.69935 4.02151 0.24452 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 23 3.94233 5.04632 0.03489 4.77362 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 24 3.67227 0.74162 3.45216 0.76236 49 c - - > 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 25 4.19301 5.23587 0.02995 4.70174 50 G - - - 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 26 2.94841 2.17695 0.22698 3.29000 51 G - - - 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 27 4.04963 0.23482 3.88311 1.76449 52 C - - < 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 28 1.11401 3.60362 0.49119 3.42238 53 G - - < 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 29 2.16432 4.50023 0.15337 4.11923 54 G - - < 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 30 3.45091 0.61077 3.23835 0.95160 55 C - - < 1.38629 1.38629 1.38629 1.38629 0.15323 4.82767 2.00945 1.46634 0.26236 1.09861 0.40547 31 2.95977 0.75468 1.70163 1.21868 56 c - - < 1.38629 1.38629 1.38629 1.38629 0.01849 4.69293 4.69293 1.46634 0.26236 2.93103 0.05482 32 2.09537 0.57948 1.74067 1.95627 57 C - - < 1.38629 1.38629 1.38629 1.38629 0.01849 4.69293 4.69293 1.46634 0.26236 0.11281 2.23789 33 0.23178 2.06941 3.35829 3.08297 58 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 34 1.21092 1.82784 2.63364 0.75609 59 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 35 1.23667 0.99476 2.73346 1.29156 60 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 36 2.96140 2.20877 0.22094 3.30614 61 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 37 1.07976 1.72340 2.04067 1.04434 62 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 38 1.19566 1.31981 1.41876 1.66974 63 a - - _ 1.38629 1.38629 1.38629 1.38629 0.32238 4.82767 1.31838 1.46634 0.26236 1.09861 0.40547 39 2.46398 1.89822 0.35799 2.71827 64 G - - _ 1.38629 1.38629 1.38629 1.38629 0.21303 1.70894 4.52716 0.11542 2.21632 0.05811 2.87426 40 1.81167 1.83313 0.53325 2.40781 67 G - - > 1.38629 1.38629 1.38629 1.38629 0.15323 4.82767 2.00945 1.46634 0.26236 1.09861 0.40547 41 2.31483 1.76239 0.40988 2.72035 68 G - - > 1.38629 1.38629 1.38629 1.38629 0.01849 4.69293 4.69293 1.46634 0.26236 0.11281 2.23789 42 0.78348 3.40634 0.75559 3.21166 69 g - - > 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 43 4.28320 2.15105 4.25460 0.15590 70 U - - > 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 44 3.66032 0.53160 3.40808 1.03985 71 C - - > 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 45 1.87518 4.03125 0.21531 3.78871 72 G - - > 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 46 1.22176 1.32471 2.62025 1.00342 73 u - - : 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 47 4.59148 0.03682 4.99537 3.95067 74 C - - : 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 48 4.19301 5.23587 0.02995 4.70174 75 G - - : 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 49 4.19301 5.23587 0.02995 4.70174 76 G - - : 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 50 4.59148 0.03682 4.99537 3.95067 77 C - - : 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 51 0.24330 3.22827 3.32042 1.96468 78 A - - : 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 52 2.49960 1.95178 2.02838 0.43957 79 U - - : 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 53 0.62726 1.06720 3.11748 2.55477 80 A - - : 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 54 1.21970 2.49193 0.58869 2.70488 81 G - - : 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 55 1.90805 3.91344 0.21849 3.57830 82 G - - : 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 56 0.68031 1.49568 1.80292 2.25735 83 A - - : 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 57 2.12002 4.03592 0.17751 3.69085 84 G - - : 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 58 0.77984 1.76764 1.88562 1.51846 85 a - - : 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 59 0.47402 1.96671 2.84822 1.71678 86 A - - : 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 60 0.23827 2.03790 3.34797 3.06713 87 A - - : 1.38629 1.38629 1.38629 1.38629 0.01614 4.82767 4.82767 1.46634 0.26236 1.09861 0.40547 61 3.09272 3.77712 0.20393 2.15235 88 G - - : 1.38629 1.38629 1.38629 1.38629 0.00810 4.81964 * 1.46634 0.26236 0.00000 * //