# STOCKHOLM 1.0
#=GF ID DUF2693-FD
#=GF AC RF02926
#=GF DE DUF2693-FD RNA
#=GF AU Weinberg Z; 0000-0002-6681-3624
#=GF GA 44.5
#=GF NC 43.9
#=GF TC 44.6
#=GF SE Weinberg Z
#=GF SS Published; PMID:28977401;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 28977401
#=GF RT Detection of 224 candidate structured RNAs by comparative analysis of
#=GF RT specific subsets of intergenic regions.
#=GF RA Weinberg Z, Lunse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR,
#=GF RA Sherlock ME, Breaker RR
#=GF RL Nucleic Acids Res. 2017;45:10811-10823.
#=GF CC DUF2693-FD RNA is a non-coding RNA (ncRNA) recognised in Bacteroides by a
#=GF CC bioinformatic analisis by Zasha Weinberg. No recognised genes. Its
#=GF CC structure has been reported in PDB 9G4R.
#=GF WK DUF2693-FD_RNA_motif
#=GF SQ 92

URS0000D66910_12908/1-51                  AUCCC-GCGGAAAGC-UAACGACUUGAAUCCCGGAGCGAGACCGGGGCGGGAG
URS0000D6BB4B_12908/1-48                  -CCCUACGUGACUGA--U--GACAGGCAACACGUAGCGAGAACGUGCGAGGGG
URS0000D66BA4_12908/1-49                  ACCCU-UGUGACUGC-AA--GAAAGGCAACACGUAGCGAGAACGUGCAAGGGU
URS0000D666D3_12908/1-49                  GCCCC-AUUGACGGA-AU--GAACGCAGCCCGUGAGCGAUACACGGAUGGGGC
URS0000D67F92_12908/1-51                  GAUCU-ACUGACUGC-UAAAGACAGGCAUCCGUGAGCGAGACACGGGUAGAUA
URS0000D6ACAF_12908/1-49                  UCCCU-GUUGACGGA-AU--GAACGGAAUUCAGUAGCGAUAACUGAGCAGGGA
URS0000D692A5_12908/1-49                  ACCCC-GUUGACGGA-UU--GAACGCUAACUGUGAGCGAGACACAGGCGGGGU
URS0000D668B7_12908/1-49                  UUCCC-GUAGUCGGA-UU--GAACGGAGUCCGGUGGCGAUAACCGGGCGGGAG
URS0000D6784C_12908/1-49                  UUCCC-GUGGUCGGA-UU--GAACGGCUUCCGGUAGCGAGAACCGGACGGGAG
URS0000D65CC7_12908/1-49                  UUCCC-GUGGUCGGA-UU--GAACGGCUUCCGGUAGCGAGGACCGGACGGGAG
URS0000D68BD3_12908/1-49                  UCCUU-GUAGACGGA-UU--GAACGGCAACGCAUAGCGAGAAUGUGACAAGGA
URS0000D6D2B1_12908/1-49                  UCCUU-GUAAACGGA-UU--GAACGGCAACGCAUAGCGAGAAUGCGACAAGGA
URS0000D65EEF_12908/1-49                  UCCUU-GUAGACGGA-UU--GAACGGCAACGCAUAGCGAGAAUGCGACAAGGA
URS0000D6870F_469585/1-49                 UCCUU-GUAGACGGA-UU--GAACGGCAACACAUAGCGAGAAUGUGACAAGGA
URS0000D6644C_12908/1-49                  UCCUU-GUGGACGGA-UU--GAACGGUAACGCAUAGCGAGAAUGCGACAGGGA
URS0000D6B5C1_12908/1-51                  GCCCU-AUUGACAGC-UUGAAACUGGCAACUGAUAGUGAGAAUCAGAUAGGGC
URS0000D6C225_1121101/1-51                GUCCU-GUUGACAGC-UUGUAACUGGCAUCCGGUAGUGAGAAUCGGGCAGGGC
URS0000D6D305_12908/1-51                  GCCCU-ACUGACAGU-UUGAAACUGGCAUCCGGUAGUGAGAAUCGGGUAGGAC
URS0000D67825_12908/1-51                  GCCCU-ACUGACAGU-UUGAAACUGGCAUCCGGUAGUGAGAAUCGGGUAGGGC
URS0000D67825_1263037/1-51                GCCCU-ACUGACAGU-UUGAAACUGGCAUCCGGUAGUGAGAAUCGGGUAGGGC
URS0000D6AF77_12908/1-51                  GCCCU-ACUGACAGU-UUGAAACUGACAUCCGGUAGUGAGAAUCGGGUAGGGC
URS0000D6B6EF_449673/1-49                 UCCCU-AUAGACGGA-CU--GAACGGCACCAGGUAGCUAGAACCUGGUAGGGA
URS0000D6A540_12908/1-49                  UCCCU-AUAGACGGA-CU--GAACGGCAACGGGUAGCGAGAACCCGGUAGGGA
URS0000D6A540_449673/1-49                 UCCCU-AUAGACGGA-CU--GAACGGCAACGGGUAGCGAGAACCCGGUAGGGA
URS0000D698C6_12908/1-49                  UCCCU-AUAGACGGA-CU--GAACGGCAACGGGUAGCGAGAACCCGGCAGGGA
URS0000D68598_12908/1-49                  UCCCU-AUAGACGGA-CU--GAACGGCAACGGGUAGCGAGAACCAGGCAGGGA
URS0000D663E5_12908/1-49                  CCCCU-ACAGACGGA-CU--GAACGGCAACGGGUAGCGAGAACCCGGUAGGGA
URS0000D69D1F_12908/1-49                  CCCCU-ACGGACGGU-AU--GAACGGCAUCCGGUAGCGAGAAUCGGGUGGGGG
URS0000D6A9BA_12908/1-49                  GCCCC-GUUGACGGA-UU--GAACGGUAGCCGGUAGCGAGAACCGGACGGGGU
URS0000D67553_12908/1-49                  ACCCU-ACUGACGGA-UU--GAACGACAGCCAGUAGCGAGAACUGGGUAGGGU
URS0000D6CE83_12908/1-49                  ACCUU-GCUGACGAA-CU--GAACGGCAUCCAGCAGCGAGAACUGGGCAGGGU
URS0000D6CAA6_12908/1-51                  CCCCU-GCUGACGGC-CAGCGACCGGCAACCGAUAGCGAGAAUCGGGUGGGGG
URS0000D6CB74_12908/1-50                  GCUCU-ACUGACGGACUU--GAACGGCAACCAAUAGCGAGAAUUGGGUAGGGC
URS0000D65E14_12908/1-49                  ACCCU-GCUGACGGA-UU--GAACGGCAGGCGAUAGCGAGAAUCGGGGAGAGU
URS0000D68913_12908/1-51                  ACCCU-GCUGACGGC-CAGUGACCGGCAACCGAUAGCGAGAAUCGGGCAGGGU
URS0000D6C112_12908/1-49                  ACCCU-GCUGACGGA-CU--GAACGGCAUCCGGUAGCGAGAACCGGGCAGGGU
URS0000D6D08C_12908/1-49                  GCCCU-ACGGACGGA-UU--GAACGGCAACCGAUAGCGAGAAUUGGGUAGGGC
URS0000D66FB8_12908/1-49                  GCCCU-ACUGACGGA-UU--GAACGGCAACCGAUAGCGAGAAUCGGGUAAGGC
URS0000D69C9C_12908/1-49                  GCCCU-ACUGACGGA-UU--GAACGGCAACCGAUAGCGAGAAUCGGGUAGGGC
URS0000D69C9C_997878/1-49                 GCCCU-ACUGACGGA-UU--GAACGGCAACCGAUAGCGAGAAUCGGGUAGGGC
URS0000D69C9C_817/1-49                    GCCCU-ACUGACGGA-UU--GAACGGCAACCGAUAGCGAGAAUCGGGUAGGGC
URS0000D65A3A_12908/1-49                  GCCCU-AUUGACGGA-UU--GAACGGCAACCGAUAGCAAGAAUCGGGUAGGGU
URS0000D6BB75_12908/1-49                  GCCCU-AUUGACGGA-UU--GAACGGCAACCGAUAGCGAGAAUCGGGUAGGGU
URS0000D68E52_12908/1-49                  ACCCU-AUUGACGGA-UU--GAACGGCAACCGAUAGCGAGAAUCGGGUAGGGC
URS0000D677DD_12908/1-49                  GCCCU-AUUGACGGA-UU--GAACGGCAACUGAUAGCGAGAAUCGGGUAGGGC
URS0000D677DD_1263055/1-49                GCCCU-AUUGACGGA-UU--GAACGGCAACUGAUAGCGAGAAUCGGGUAGGGC
URS0000D65D7C_12908/1-49                  GCCCU-AUUGACGGA-UU--GAACGGCAACCGAUAGCAAGAAUCGGGUAGGGC
URS0000D688D5_12908/1-49                  GCCCU-AUUGACGGA-UU--GAACGGCAACCGAUAGCGAGAAUCGGGUAGGGC
URS0000D6D2EC_12908/1-49                  GCCCU-ACUGACGGA-UU--GAACGGCAGCCGAUAGCAAGAAUCGGGUAGGGC
URS0000D6660A_12908/1-49                  GCCCU-ACGGACGGA-UU--GAACGGCAGCCGAUAGCGAGAAUCGGGUAGGGU
URS0000D68538_12908/1-49                  GCCCU-ACGGACGGA-UU--GAACGGCAACCGAUAGCGAGAAUCGGGUAGGGU
URS0000D68538_457394/1-49                 GCCCU-ACGGACGGA-UU--GAACGGCAACCGAUAGCGAGAAUCGGGUAGGGU
URS0000D662F5_12908/1-49                  GCCCU-ACAUACGGA-UU--GAACGGCAACCGAUAGCGAGAAUCGGGUAGGGU
URS0000D66279_457391/1-49                 GCCCU-ACAGACGGA-UU--GAACGGCAACCGAUAGCGAGAAUCGGGUAGGGU
URS0000D66279_12908/1-49                  GCCCU-ACAGACGGA-UU--GAACGGCAACCGAUAGCGAGAAUCGGGUAGGGU
URS0000D66279_997875/1-49                 GCCCU-ACAGACGGA-UU--GAACGGCAACCGAUAGCGAGAAUCGGGUAGGGU
URS0000D66279_997877/1-49                 GCCCU-ACAGACGGA-UU--GAACGGCAACCGAUAGCGAGAAUCGGGUAGGGU
URS0000D66279_702446/1-49                 GCCCU-ACAGACGGA-UU--GAACGGCAACCGAUAGCGAGAAUCGGGUAGGGU
URS0000D66279_997891/1-49                 GCCCU-ACAGACGGA-UU--GAACGGCAACCGAUAGCGAGAAUCGGGUAGGGU
URS0000D671FC_12908/1-49                  GCCCU-ACUGACGGA-UU--GAACGGCAGCCGAUAGCGAGAAUCGGGGAGGGU
URS0000D679C2_12908/1-49                  GCCCU-ACUGACGGA-UU--GAACGGCAGCCGAUAGCGAGAAUCGGGUAGGGU
URS0000D6747A_12908/1-49                  GCCCU-ACUGACGGA-UU--GAACGGUAUCCGAUAGCGAGAAUCGGGUAGGGC
URS0000D6A1FF_12908/1-49                  GCCCU-ACUGACGGA-UU--GAACGGCAGCCGAUAGCGAGAAUCGGGUAGGGC
URS0000D6A6B0_12908/1-49                  GCCCU-ACUGACGGA-UU--GAACGGCAUCCGAUAGCGAGAAUCGGGUAGGGC
URS0000D6AF1C_12908/1-49                  GCCCU-ACAGACGGA-UU--GAACGGCAACCGAUAGCGAGAAUCGGGUAGGGC
URS0000D6A2F5_12908/1-49                  ACCCU-GCUGACGGA-UU--GAACGGCAGCCGAUAGCGAGAAUCGGACGGGGU
URS0000D667A7_12908/1-49                  GCCCU-GCUGACGGA-UU--GAACGGCAACCGAUAGCGAGAAUCGGGUAGGGU
URS0000D66C6F_12908/1-49                  GCCCU-GCUGACGGA-UU--GAACGGCAACCGAUAGCGAGAAUCGGGCAGGGU
URS0000D661A8_12908/1-49                  ACCCU-ACUGACGGA-UU--GAACGGCAGCCGAUAGCGAGAAUCGGGCAGGGU
URS0000D6C0D9_12908/1-49                  ACCCU-GCUGACGGA-UU--GAACGGCAGCCGAUAGCGAGAAUCGGACAGGGU
URS0000D6ADC0_12908/1-49                  ACCCU-GCUGACGGA-UU--GAACGGCAACCGAUAGCGAGAAUCGGGCAGGGU
URS0000D698B0_12908/1-49                  ACCCU-GCUGACGGA-UU--GAACGGCAGCCGAUAGCGAGAAUCGGGCAGGGU
URS0000D6A20A_12908/1-49                  ACCCU-GCUGACGGA-CU--GAACGGCAACCGAUAGCGAGAAUCGGGCAGGGU
URS0000D6A20A_1262749/1-49                ACCCU-GCUGACGGA-CU--GAACGGCAACCGAUAGCGAGAAUCGGGCAGGGU
URS0000D67129_12908/1-49                  ACCCU-ACUGACGGA-UU--GAACGGCAGCCGAUAGCGAGAAUCGGGUAGGGU
URS0000D66241_12908/1-49                  ACCCU-GCUGCCGGA-CU--GACCGGCAACCGAUAGCGAGAAUCGGGCAGGGU
URS0000D65CD5_12908/1-49                  ACCCU-GCAGACGGA-UU--GAACGGCAGCCGACAGCGAGAGCCGGACAGGGU
URS0000D6CAED_12908/1-49                  ACCCU-GCUGACGGA-UU--GAACGGCAACCGGCAGCGAGAGCCGGGCAGGGU
URS0000D6BA5E_12908/1-51                  GCCUU-ACAGACAGC-UAAAGACUGGCAACCGAUAGCGAGAAUCGGGUGGGGC
URS0000D6B4C4_12908/1-51                  GUCCU-AUUGGCAGC-UAAAGACUGGCAACCGAUAGCGAGAAUCGGGUAGGGC
URS0000D66C83_12908/1-51                  GCCCU-AUUGACAGC-UAAAGACUGGCAUCCGAUAGCGAGAAUCGGGGAGGGU
URS0000D6804D_12908/1-51                  GUCCU-AUUGACAGC-UAAAGACUGGCAUCCGAUAGCGAGAAUCGGGUAGGGU
URS0000D68AD0_12908/1-51                  GCCCU-AUUGACAGC-UAAAGACUGUCAUCCGAUAGCGAGAAUCGGGUAGGGU
URS0000D6C5DA_12908/1-51                  GCCCU-AUUGACAGC-UAAAGACUGACAUCCGAUAGCGAGAAUCGGGUAGGGU
URS0000D6B4BF_12908/1-51                  GCCCU-AUUGACAGC-UAAAGACUGGCAUCCGAUAGCAAGAAUCGGGUAGGGU
URS0000D694B6_12908/1-51                  GCCCU-AUUGACAGC-UAAAGACUGGCAUCCGAUAGCGAGAAUCGGGUAGGGG
URS0000D6A780_12908/1-51                  GCCCU-AUUGAUAGC-UAAAGACUGGCAUCCGAUAGCGAGAAUCGGGUAGGGU
URS0000D6BBDF_12908/1-51                  GCCCU-AUUGACAGC-UAAAGACUGGCAUCCGAUAGCGAGAACCGGGUAGGGU
URS0000D65C6C_12908/1-51                  GCCCU-AUUGACAGC-UAAAGACUGGCAUCCGAUAGCGAGAAUCGGGUAGGGU
URS0000D673A2_12908/1-50                  GCCCU-AUUGACAGC-UAAAGACUGGCAUCCGAUAGCGAG-AUCGGGUAGGGU
URS0000D6D315_12908/1-48                  CCCCU-AUUGACGGA-UU--GAACGGCAUCCAGUA-CAAAAACUGGAUAGGGG
URS0003421765_997877/1-47                 -CCCU-ACAGACGGA-UU--GAACGGCAACCGAUAGCGAGAAUCGGGUAGGG-
#=GR URS0003421765_997877/1-47  9G4R_A_SS .((((.((...((.......{..)).{..(((((..}..}.))))))))))).
#=GC SS_cons                              (((((.((,,,<<__.__..A__>>,B,,<<<<<__a__b_>>>>>)))))))
#=GC RF                                   aCCCU.gcUGACGGA.UU..GAACGGCAaCCGgUAGCGAGAAcCGGgcAGGGu
#=GC RNA_structural_elements              [=P1=5p]===[=====P2=====]====[=======P3======][P1=3p]
//
