INFERNAL1/a [1.1.5 | Sep 2023] NAME DUF805b ACC RF02914 DESC DUF805b RNA STATES 109 NODES 33 CLEN 35 W 50 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 16 22:55:38 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02914/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1230 EFFN 1230.000000 CKSUM 870071140 NULL 0.000 0.000 0.000 0.000 GA 35.60 TC 35.60 NC 35.50 EFP7GF -24.5875 0.72751 ECMLC 0.71554 -6.64989 1.93220 1600000 557330 0.002153 ECMGC 0.29839 -35.61530 -14.70456 1600000 205046 0.001951 ECMLI 0.78067 -5.14303 2.40285 1600000 434067 0.002765 ECMGI 0.29966 -34.38830 -14.01872 1600000 179059 0.002234 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 50 67 -15.398 -15.605 -0.000 -14.019 IL 1 1 2 1 4 1 16 55 74 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 15 54 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 4 20 50 67 -16.601 -0.000 -14.919 1.531 -1.776 -2.006 -0.815 D 4 2 3 5 3 0 10 49 66 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 14 51 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 45 - A - - MR 6 5 3 8 3 4 19 49 66 -16.601 -0.000 -14.919 1.656 -3.693 -0.728 -2.571 D 7 5 3 8 3 0 10 47 65 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 13 50 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 44 - c - - MR 9 8 3 11 3 4 18 48 65 -16.601 -0.000 -14.919 0.234 0.703 -0.605 -0.893 D 10 8 3 11 3 0 10 46 64 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 12 49 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 43 - G - - MR 12 11 3 14 3 3 17 47 64 -16.601 -0.000 -14.919 -3.093 -12.605 1.957 -11.580 D 13 11 3 14 3 0 10 45 63 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 12 48 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 42 - G - - MR 15 14 3 17 3 3 16 46 63 -16.601 -0.000 -14.919 -2.433 -12.597 1.931 -11.577 D 16 14 3 17 3 0 9 44 62 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 11 47 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 41 - A - - MR 18 17 3 20 3 3 15 45 62 -16.601 -0.000 -14.919 1.979 -12.162 -11.524 -4.108 D 19 17 3 20 3 0 9 43 61 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 11 46 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 40 - U - - MR 21 20 3 23 3 3 14 44 61 -16.601 -0.000 -14.919 -13.598 -12.215 -15.180 2.000 D 22 20 3 23 3 0 8 42 60 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 11 45 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 39 - G - - MR 24 23 3 26 3 2 13 43 60 -16.601 -0.000 -14.919 -4.442 -12.500 1.969 -4.647 D 25 23 3 26 3 0 8 41 59 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 11 44 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 38 - A - - MR 27 26 3 29 3 2 12 42 59 -16.601 -0.000 -14.919 2.000 -12.243 -11.491 -11.576 D 28 26 3 29 3 0 8 40 58 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 11 43 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 37 - G - - MR 30 29 3 32 3 1 11 41 58 -16.601 -0.002 -9.338 -4.254 -12.484 1.966 -4.661 D 31 29 3 32 3 0 8 40 57 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 10 42 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 36 - A - - MR 33 32 3 35 3 1 11 40 57 -16.599 -0.000 -14.917 1.946 -3.669 -10.383 -3.892 D 34 32 3 35 3 0 8 39 56 -8.662 -0.213 -2.892 IR 35 35 3 35 3 1 9 41 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 35 - a - - MR 36 35 3 38 3 1 10 39 56 -16.601 -0.005 -8.178 0.797 -0.308 -2.033 0.275 D 37 35 3 38 3 0 7 37 55 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 9 40 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 34 - A - - MR 39 38 3 41 3 1 9 38 55 -16.596 -0.152 -3.319 1.866 -4.433 -3.749 -2.098 D 40 38 3 41 3 0 7 34 52 -9.661 -4.839 -0.053 IR 41 41 3 41 3 1 9 39 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 33 - A - - MR 42 41 3 44 3 1 9 37 54 -16.444 -0.156 -3.287 1.711 -2.234 -1.963 -1.954 D 43 41 3 44 3 0 7 30 48 -14.425 -9.602 -0.002 IR 44 44 3 44 3 1 9 38 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 32 - u - - MR 45 44 3 47 5 1 9 36 54 -0.833 -1.189 -14.744 -14.956 -15.847 0.300 -2.287 -0.609 0.932 D 46 44 3 47 5 0 7 28 46 -13.469 -0.787 -1.253 -12.526 -10.521 IR 47 47 3 47 5 1 9 36 53 -1.533 -0.612 -15.024 -13.192 -14.297 0.000 0.000 0.000 0.000 [ MATP 16 ] 2 24 A U - - MP 48 47 3 52 6 2 10 28 46 -16.051 -15.991 -0.000 -14.767 -15.047 -15.442 -0.704 -2.694 -1.649 3.086 -1.073 -8.269 1.129 -1.504 -4.734 -0.892 -4.837 -0.881 0.300 -3.777 -3.097 -0.276 ML 49 47 3 52 6 1 8 27 45 -13.446 -13.792 -0.006 -8.201 -13.642 -11.172 1.242 -1.287 -2.274 0.025 MR 50 47 3 52 6 1 3 28 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 3 52 6 0 0 26 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 3 29 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 3 29 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 3 23 G C - - MP 54 53 6 58 6 2 9 26 44 -16.174 -16.114 -0.000 -14.890 -15.170 -15.565 -5.144 -6.505 -6.890 1.955 -11.088 -10.557 0.609 -5.783 -10.399 3.267 -10.645 -3.017 -0.463 -9.816 -5.462 -5.102 ML 55 53 6 58 6 1 2 27 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 2 27 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 26 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 3 28 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 3 27 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 4 22 G C - - MP 60 59 6 64 6 2 7 24 42 -16.174 -16.114 -0.000 -14.890 -15.170 -15.565 -13.741 -4.387 -15.021 -1.129 -15.406 -11.978 -1.690 -14.930 -12.070 3.900 -12.295 -6.038 -2.089 -12.379 -12.259 -13.853 ML 61 59 6 64 6 1 2 27 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 2 27 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 25 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 3 26 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 3 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 5 21 c g - - MP 66 65 6 70 4 2 5 22 40 -15.398 -10.996 -0.001 -14.019 -6.670 -10.157 -2.777 2.018 -5.043 -11.307 2.935 -9.993 -5.408 1.663 -10.840 -6.287 -0.558 -10.645 -2.198 -6.427 ML 67 65 6 70 4 1 1 27 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 4 1 1 26 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 69 65 6 70 4 0 0 25 42 -4.568 -4.250 -2.265 -0.520 IL 70 70 5 70 4 1 3 28 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 71 71 6 71 3 1 2 25 41 -1.879 -0.543 -4.579 0.000 0.000 0.000 0.000 [ MATL 20 ] 6 - G - - - ML 72 71 6 74 3 1 3 20 38 -16.308 -0.005 -8.126 -1.284 -3.231 1.787 -4.944 D 73 71 6 74 3 0 0 23 42 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 2 28 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 7 - G - - - ML 75 74 3 77 3 1 2 19 37 -16.303 -0.000 -14.957 -0.433 -3.006 1.400 -1.010 D 76 74 3 77 3 0 0 20 39 -9.718 -0.088 -4.109 IL 77 77 3 77 3 1 1 27 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 8 - A - - - ML 78 77 3 80 3 1 1 17 36 -16.308 -0.004 -8.439 1.567 -2.063 -2.320 -0.741 D 79 77 3 80 3 0 0 21 40 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 9 - A - - - ML 81 80 3 83 3 1 1 16 35 -5.305 -0.092 -4.788 1.469 -2.968 -3.152 -0.013 D 82 80 3 83 3 0 0 15 34 -9.432 -0.108 -3.823 IL 83 83 3 83 3 1 1 16 35 -5.764 -0.031 -8.465 0.000 0.000 0.000 0.000 [ MATL 24 ] 12 - g - - - ML 84 83 3 86 3 1 1 15 34 -16.255 -0.000 -14.909 -0.913 -0.571 0.844 0.001 D 85 83 3 86 3 0 0 15 34 -12.947 -0.009 -7.338 IL 86 86 3 86 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 13 - C - - - ML 87 86 3 89 3 1 1 14 33 -16.308 -0.000 -14.962 -11.771 1.957 -12.238 -3.111 D 88 86 3 89 3 0 0 19 37 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 14 - C - - - ML 90 89 3 92 3 1 1 13 31 -16.308 -0.000 -14.962 -12.115 1.839 -12.681 -1.243 D 91 89 3 92 3 0 0 18 36 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 15 - G - - - ML 93 92 3 95 3 1 1 12 30 -16.308 -0.000 -14.962 -4.511 -4.394 1.967 -11.503 D 94 92 3 95 3 0 0 17 35 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 16 - A - - - ML 96 95 3 98 3 1 1 10 29 -16.308 -0.000 -14.962 1.970 -11.596 -4.604 -4.583 D 97 95 3 98 3 0 0 16 34 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 17 - A - - - ML 99 98 3 101 3 1 1 9 27 -16.308 -0.000 -14.962 2.000 -12.243 -11.491 -11.576 D 100 98 3 101 3 0 0 15 33 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 18 - A - - - ML 102 101 3 104 3 1 1 7 26 -16.308 -0.000 -14.962 1.979 -12.149 -4.113 -11.545 D 103 101 3 104 3 0 0 13 32 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 19 - A - - - ML 105 104 3 107 2 1 1 1 1 * 0.000 1.978 -12.143 -4.032 -11.543 D 106 104 3 107 2 0 0 0 0 * 0.000 IL 107 107 3 107 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 32 ] - - - - - - E 108 107 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME DUF805b ACC RF02914 DESC DUF805b RNA LENG 35 MAXL 76 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 16 22:55:38 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02914/CM NSEQ 1230 EFFN 1023.431274 CKSUM 870071140 STATS LOCAL MSV -7.0809 0.72751 STATS LOCAL VITERBI -7.3356 0.72751 STATS LOCAL FORWARD -3.6160 0.72751 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 0.88675 1.81432 1.22774 2.02416 1.38629 1.38629 1.38629 1.38629 0.00016 9.41914 9.41914 1.46634 0.26236 0.00000 * 1 0.32505 2.61656 2.77554 1.95095 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.00016 9.41914 9.41914 1.46634 0.26236 1.09861 0.40547 2 0.51625 1.70455 2.64391 1.89506 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.00016 9.41914 9.41914 1.46634 0.26236 1.09861 0.40547 3 1.40557 2.33753 0.49539 3.01855 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.00016 9.41914 9.41914 1.46634 0.26236 1.09861 0.40547 4 3.45241 3.94107 0.06815 4.21406 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.00016 9.41914 9.41914 1.46634 0.26236 1.09861 0.40547 5 1.33676 0.73452 1.60805 2.85961 5 c - - < 1.38629 1.38629 1.38629 1.38629 0.00016 9.41914 9.41914 1.46634 0.26236 1.09861 0.40547 6 2.27580 3.62333 0.14809 4.79852 6 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00372 9.41914 5.61868 1.46634 0.26236 1.09861 0.40547 7 1.68674 3.46700 0.41619 2.08658 7 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00016 9.41559 9.41559 1.46634 0.26236 0.04375 3.15107 8 0.30060 2.81504 2.99314 1.89982 8 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00302 9.41914 5.83233 1.46634 0.26236 1.09861 0.40547 9 0.36816 3.43997 3.56810 1.39547 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06357 3.67497 3.31746 0.00641 5.05329 0.05389 2.94756 10 2.01769 1.78175 0.80187 1.38548 12 g - - _ 1.38629 1.38629 1.38629 1.38629 0.00017 9.38242 9.38242 1.46634 0.26236 0.00448 5.41017 11 9.32278 0.02953 9.63923 3.54246 13 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00016 9.41914 9.41914 1.46634 0.26236 1.09861 0.40547 12 9.55718 0.11170 9.94003 2.24840 14 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00016 9.41914 9.41914 1.46634 0.26236 1.09861 0.40547 13 4.51131 4.43277 0.02324 9.16911 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00016 9.41914 9.41914 1.46634 0.26236 1.09861 0.40547 14 0.02102 9.21056 4.57769 4.56374 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00016 9.41914 9.41914 1.46634 0.26236 1.09861 0.40547 15 0.00026 9.69189 9.16899 9.22965 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00016 9.41914 9.41914 1.46634 0.26236 1.09861 0.40547 16 0.01470 9.62228 4.23895 9.20549 18 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00016 9.41914 9.41914 1.46634 0.26236 1.09861 0.40547 17 0.01554 9.61791 4.18289 9.20373 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00063 7.50445 9.41914 0.27250 1.43328 1.09861 0.40547 18 3.06194 1.61930 0.69194 1.36820 21 G - - > 1.38629 1.38629 1.38629 1.38629 0.00016 9.41914 9.41914 1.46634 0.26236 1.09861 0.40547 19 4.21625 0.06592 3.94140 3.51929 22 C - - > 1.38629 1.38629 1.38629 1.38629 0.00016 9.41914 9.41914 1.46634 0.26236 1.09861 0.40547 20 3.05109 0.50696 2.32927 1.37435 23 C - - > 1.38629 1.38629 1.38629 1.38629 0.08578 9.41914 2.49949 1.46634 0.26236 1.09861 0.40547 21 1.91232 3.02396 1.79224 0.45088 24 U - - > 1.38629 1.38629 1.38629 1.38629 0.95592 0.70860 2.09389 0.42464 1.06133 6.92163 0.00099 22 1.17863 2.96638 1.80785 0.74065 32 u - - : 1.38629 1.38629 1.38629 1.38629 0.00020 9.20215 9.20215 1.46634 0.26236 0.75364 0.63611 23 0.20076 2.93389 2.74688 2.73991 33 A - - : 1.38629 1.38629 1.38629 1.38629 0.00018 9.31019 9.31019 1.46634 0.26236 0.03524 3.36309 24 0.09295 4.45144 3.98181 2.83964 34 A - - : 1.38629 1.38629 1.38629 1.38629 0.00016 9.41572 9.41572 1.46634 0.26236 0.04531 3.11680 25 0.83394 1.60003 2.79267 1.19562 35 a - - : 1.38629 1.38629 1.38629 1.38629 0.00168 9.41914 6.44124 1.46634 0.26236 1.09861 0.40547 26 0.03745 3.92901 8.37688 4.08233 36 A - - : 1.38629 1.38629 1.38629 1.38629 0.00016 9.41763 9.41763 1.46634 0.26236 0.09694 2.38170 27 4.33416 9.84739 0.02332 4.61678 37 G - - : 1.38629 1.38629 1.38629 1.38629 0.00016 9.41914 9.41914 1.46634 0.26236 1.09861 0.40547 28 0.00026 9.69189 9.16899 9.22965 38 A - - : 1.38629 1.38629 1.38629 1.38629 0.00016 9.41914 9.41914 1.46634 0.26236 1.09861 0.40547 29 4.46403 9.85929 0.02178 4.60715 39 G - - : 1.38629 1.38629 1.38629 1.38629 0.00016 9.41914 9.41914 1.46634 0.26236 1.09861 0.40547 30 10.62327 9.66723 11.71539 0.00010 40 U - - : 1.38629 1.38629 1.38629 1.38629 0.00016 9.41914 9.41914 1.46634 0.26236 1.09861 0.40547 31 0.01475 9.62595 9.18702 4.23551 41 A - - : 1.38629 1.38629 1.38629 1.38629 0.00016 9.41914 9.41914 1.46634 0.26236 1.09861 0.40547 32 3.07368 9.93339 0.04751 9.22721 42 G - - : 1.38629 1.38629 1.38629 1.38629 0.00016 9.41914 9.41914 1.46634 0.26236 1.09861 0.40547 33 3.53073 9.93948 0.02987 9.22994 43 G - - : 1.38629 1.38629 1.38629 1.38629 0.00016 9.41914 9.41914 1.46634 0.26236 1.09861 0.40547 34 1.22431 0.89942 1.80556 2.00358 44 c - - : 1.38629 1.38629 1.38629 1.38629 0.00016 9.41914 9.41914 1.46634 0.26236 1.09861 0.40547 35 0.23873 3.94203 1.89153 3.16725 45 A - - : 1.38629 1.38629 1.38629 1.38629 0.00008 9.41906 * 1.46634 0.26236 0.00000 * //