INFERNAL1/a [1.1.5 | Sep 2023] NAME pemK ACC RF02913 DESC pemK RNA STATES 197 NODES 57 CLEN 61 W 344 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 03:26:04 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/14.9/R-scape_updates/RF02913/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 1542 EFFN 14.708599 CKSUM 2354109768 NULL 0.000 0.000 0.000 0.000 GA 34.80 TC 34.80 NC 34.70 EFP7GF -16.8719 0.71898 ECMLC 0.57732 -9.33972 1.35437 1600000 576099 0.002083 ECMGC 0.39515 -16.35887 -4.45329 1600000 44177 0.009054 ECMLI 0.52357 -9.43446 2.07896 1600000 497899 0.002410 ECMGI 0.41962 -12.33339 -1.26323 1600000 41635 0.009607 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 344 680 -9.159 -9.366 -0.011 -7.780 IL 1 1 2 1 4 8 31 347 683 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 8 31 346 682 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 10 32 345 681 -10.092 -0.005 -8.746 1.733 -1.834 -2.604 -2.122 D 4 2 3 5 3 4 26 342 678 -6.174 -1.687 -0.566 IL 5 5 3 5 3 7 30 345 681 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 9 31 344 680 -10.092 -0.005 -8.746 -1.902 -0.170 -3.231 1.453 D 7 5 3 8 3 4 25 341 677 -6.174 -1.687 -0.566 IL 8 8 3 8 3 7 29 344 680 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 9 30 343 679 -10.092 -0.005 -8.746 1.878 -3.228 -3.227 -3.171 D 10 8 3 11 3 4 25 340 676 -6.174 -1.687 -0.566 IL 11 11 3 11 3 7 29 343 679 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 9 30 342 678 -10.092 -0.005 -8.746 1.959 -5.254 -4.968 -4.223 D 13 11 3 14 3 3 24 339 675 -6.174 -1.687 -0.566 IL 14 14 3 14 3 6 28 342 678 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 8 29 341 677 -10.092 -0.005 -8.746 -1.461 -2.646 -3.844 1.769 D 16 14 3 17 3 3 24 338 674 -6.174 -1.687 -0.566 IL 17 17 3 17 3 6 27 341 677 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 8 28 340 676 -10.092 -0.005 -8.485 -3.816 -5.860 1.952 -4.508 D 19 17 3 20 3 3 23 337 673 -6.174 -1.687 -0.566 IL 20 20 3 20 3 6 27 340 676 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 7 27 339 675 -10.091 -0.005 -8.745 1.807 -3.403 -1.587 -3.743 D 22 20 3 23 3 2 22 336 672 -6.201 -1.630 -0.592 IL 23 23 3 23 3 5 26 339 675 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 7 26 338 674 -10.092 -0.005 -8.564 -2.320 -2.896 -2.933 1.821 D 25 23 3 26 3 2 22 335 671 -6.174 -1.687 -0.566 IL 26 26 3 26 3 5 25 338 674 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 7 25 337 673 -10.091 -0.005 -8.745 1.935 -4.148 -4.018 -4.095 D 28 26 3 29 3 2 21 335 671 -6.192 -1.705 -0.557 IL 29 29 3 29 3 5 25 337 673 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - C - - - ML 30 29 3 32 3 6 24 336 672 -10.091 -0.005 -8.745 -4.533 1.935 -4.407 -3.546 D 31 29 3 32 3 2 21 334 670 -6.192 -1.648 -0.584 IL 32 32 3 32 3 4 24 336 672 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 33 32 3 35 3 6 23 335 671 -10.408 -0.005 -8.522 -2.421 -3.062 -3.286 1.844 D 34 32 3 35 3 2 20 333 669 -5.620 -0.734 -1.403 IL 35 35 3 35 3 4 23 335 671 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 160 - a - - MR 36 35 3 38 3 5 22 334 670 -10.407 -0.004 -8.725 0.777 -1.746 0.287 -0.381 D 37 35 3 38 3 1 19 332 668 -6.408 -1.534 -0.638 IR 38 38 3 38 3 3 22 334 670 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 159 - G - - MR 39 38 3 41 3 4 21 333 669 -10.408 -0.004 -8.725 -3.963 -6.168 1.963 -5.365 D 40 38 3 41 3 1 19 331 667 -6.390 -1.568 -0.620 IR 41 41 3 41 3 3 21 333 669 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 158 - U - - MR 42 41 3 44 5 3 20 332 668 -9.072 -0.010 -8.887 -9.099 -9.991 -2.936 -3.120 -3.571 1.876 D 43 41 3 44 5 1 19 331 667 -5.352 -0.707 -2.978 -4.409 -2.404 IR 44 44 3 44 5 2 20 332 668 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 157 U A - - MP 45 44 3 49 3 2 19 331 667 -7.816 -18.286 -0.006 -5.324 -5.178 -5.220 -1.165 -3.607 -5.867 1.764 -4.759 -3.222 -0.969 -5.588 -2.931 3.409 -3.591 -1.522 -3.019 ML 46 44 3 49 3 1 19 332 667 -1.585 -1.585 -1.585 0.368 -0.385 -0.191 0.094 MR 47 44 3 49 3 1 19 332 667 -1.585 -1.585 -1.585 0.368 -0.385 -0.191 0.094 D 48 44 3 49 3 0 18 331 666 -1.585 -1.585 -1.585 IL 49 49 5 49 3 1 19 332 668 -0.610 -4.491 -1.736 0.000 0.000 0.000 0.000 IR 50 50 6 50 2 1 18 330 666 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 16 ] - - - - - - B 51 50 6 52 93 0 17 329 665 [ BEGL 17 ] - - - - - - S 52 51 1 53 4 0 0 296 632 -0.020 -8.336 -7.088 -8.383 [ MATP 18 ] 13 111 C G - - MP 53 52 1 57 6 2 2 296 632 -10.358 -10.297 -0.012 -9.074 -8.062 -9.526 -5.500 -5.287 -4.686 -0.588 -3.582 -6.002 3.641 -4.538 -5.286 -0.361 -5.698 -2.652 0.299 -5.625 -1.558 -4.029 ML 54 52 1 57 6 1 1 291 627 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 1 57 6 1 1 290 626 -7.080 -5.809 -1.449 -5.787 -0.921 -4.001 0.585 -0.555 -0.191 -0.084 D 56 52 1 57 6 0 0 280 616 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 294 630 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 294 630 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 14 110 c g - - MP 59 58 6 63 6 2 2 294 630 -10.358 -10.297 -0.073 -8.782 -6.735 -4.795 -2.665 -3.841 -4.060 0.115 -3.011 -5.083 2.805 -3.905 -3.981 0.241 -4.710 -1.928 2.342 -4.164 -0.928 -2.185 ML 60 58 6 63 6 1 1 288 624 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 286 622 -7.073 -5.802 -1.711 -5.780 -0.766 -3.994 0.591 -0.538 -0.240 -0.061 D 62 58 6 63 6 0 0 276 612 -9.060 -7.758 -3.555 -4.238 -4.255 -0.316 IL 63 63 5 63 6 1 1 293 629 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 293 629 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 109 G C - - MP 65 64 6 69 6 2 2 293 629 -10.294 -10.234 -0.167 -9.010 -8.048 -3.292 -2.984 -2.412 -4.116 0.628 -4.740 -3.899 0.737 -4.709 -3.409 3.275 -4.630 -0.408 -0.364 -3.906 -0.625 -2.243 ML 66 64 6 69 6 1 1 283 618 -6.269 -6.615 -1.329 -1.024 -6.465 -3.723 0.434 -0.432 -0.185 0.039 MR 67 64 6 69 6 1 1 281 617 -7.340 -6.069 -1.730 -6.047 -1.142 -2.256 0.912 -0.782 -0.518 -0.254 D 68 64 6 69 6 0 0 272 608 -10.319 -9.017 -4.814 -5.497 -5.514 -0.124 IL 69 69 5 69 6 1 1 291 627 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 292 628 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 108 u g - - MP 71 70 6 75 4 2 2 292 628 -0.945 -5.388 -1.177 -6.117 -4.181 -4.046 -4.238 0.541 -3.375 -5.067 1.944 -3.837 -4.167 0.475 -4.689 -1.767 1.618 -4.412 2.395 -2.489 ML 72 70 6 75 4 1 1 265 601 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 4 1 1 268 604 -4.512 -3.021 -1.783 -0.882 0.449 -0.565 0.034 -0.097 D 74 70 6 75 4 0 0 271 607 -6.781 -2.324 -0.557 -3.163 IL 75 75 5 75 4 1 1 301 637 -0.589 -1.657 -5.894 -9.632 0.000 0.000 0.000 0.000 IR 76 76 6 76 3 1 1 299 635 -0.079 -4.272 -9.300 0.000 0.000 0.000 0.000 [ MATL 22 ] 27 - A - - - ML 77 76 6 79 3 1 1 16 34 -10.067 -0.005 -8.721 1.103 -1.363 -0.782 -0.181 D 78 76 6 79 3 0 0 16 35 -6.941 -0.800 -1.260 IL 79 79 3 79 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 28 - a - - - ML 80 79 3 82 3 1 1 15 33 -10.091 -0.005 -8.594 0.757 -1.018 0.137 -0.480 D 81 79 3 82 3 0 0 15 34 -6.224 -1.737 -0.542 IL 82 82 3 82 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 29 - u - - - ML 83 82 3 85 3 1 1 13 32 -10.090 -0.006 -8.186 -0.306 0.244 -0.647 0.452 D 84 82 3 85 3 0 0 14 33 -6.238 -1.751 -0.536 IL 85 85 3 85 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 30 - u - - - ML 86 85 3 88 3 1 1 12 30 -10.089 -0.461 -1.874 -0.347 0.034 -0.176 0.384 D 87 85 3 88 3 0 0 13 32 -6.298 -1.811 -0.510 IL 88 88 3 88 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 31 - c - - - ML 89 88 3 91 2 1 1 1 1 * 0.000 0.382 0.414 -1.281 -0.070 D 90 88 3 91 2 0 0 0 0 * 0.000 IL 91 91 3 91 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 92 91 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 93 51 1 94 2 0 6 66 107 -4.414 -0.069 IL 94 94 2 94 2 1 7 67 108 -2.662 -0.248 0.000 0.000 0.000 0.000 [ BIF 29 ] - - - - - - B 95 94 2 96 155 0 6 66 107 [ BEGL 30 ] - - - - - - S 96 95 1 97 4 0 0 53 94 -0.018 -8.071 -7.582 -8.213 [ MATP 31 ] 114 139 C G - - MP 97 96 1 101 6 2 2 53 94 -10.359 -10.299 -0.010 -9.075 -8.792 -9.750 -4.038 -4.568 -4.073 -0.454 -3.568 -5.210 3.408 -3.789 -4.698 0.011 -4.860 -2.003 1.218 -5.007 -0.917 -3.447 ML 98 96 1 101 6 1 1 51 92 -6.275 -6.621 -1.274 -1.030 -6.471 -4.001 0.333 -0.279 -0.265 0.116 MR 99 96 1 101 6 1 1 51 92 -7.007 -5.736 -1.586 -5.714 -0.848 -3.928 0.399 -0.470 -0.042 -0.017 D 100 96 1 101 6 0 0 48 89 -9.068 -7.767 -3.564 -4.246 -4.263 -0.314 IL 101 101 5 101 6 1 1 52 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 102 102 6 102 5 1 1 52 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 115 138 c g - - MP 103 102 6 107 6 2 2 51 92 -10.360 -10.299 -0.014 -9.076 -8.104 -8.573 -3.129 -3.596 -3.256 0.225 -2.959 -4.179 2.617 -3.706 -3.578 0.291 -4.239 -1.703 2.401 -2.491 -0.335 -2.237 ML 104 102 6 107 6 1 1 49 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 105 102 6 107 6 1 1 49 90 -7.016 -5.745 -1.567 -5.723 -0.857 -3.937 0.323 -0.252 -0.284 0.121 D 106 102 6 107 6 0 0 47 88 -9.068 -7.767 -3.564 -4.246 -4.263 -0.314 IL 107 107 5 107 6 1 1 50 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 108 108 6 108 5 1 1 50 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 116 137 c g - - MP 109 108 6 113 4 2 2 49 90 -9.151 -9.358 -0.058 -4.780 -3.515 -2.493 -3.479 0.268 -2.940 -3.771 2.662 -3.752 -3.608 2.223 -3.959 -1.427 0.693 -3.223 -0.465 -2.355 ML 110 108 6 113 4 1 1 48 89 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 111 108 6 113 4 1 1 47 88 -4.903 -3.932 -1.799 -0.704 0.248 -0.077 -0.400 0.146 D 112 108 6 113 4 0 0 46 87 -4.663 -4.344 -2.360 -0.481 IL 113 113 5 113 4 1 1 49 90 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 114 114 6 114 3 1 1 49 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 117 - G - - - ML 115 114 6 117 3 1 1 47 88 -10.355 -0.019 -6.343 -1.637 -1.018 1.519 -1.649 D 116 114 6 117 3 0 0 45 86 -6.541 -1.024 -1.008 IL 117 117 3 117 3 1 1 47 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 136 - G - - MR 118 117 3 120 5 1 1 46 87 -9.026 -0.015 -8.841 -8.038 -8.813 -1.334 -2.463 1.714 -2.826 D 119 117 3 120 5 0 0 44 85 -6.049 -0.884 -3.675 -5.106 -1.574 IR 120 120 3 120 5 1 1 46 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 118 135 g c - - MP 121 120 3 125 6 2 2 45 86 -10.338 -10.277 -0.017 -9.053 -9.333 -7.296 -4.111 -3.523 -4.056 0.787 -2.704 -4.905 2.273 -4.216 -3.604 2.663 -4.323 -1.365 0.461 -4.105 -0.829 -2.777 ML 122 120 3 125 6 1 1 43 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 123 120 3 125 6 1 1 43 83 -7.044 -5.773 -1.514 -5.751 -0.885 -3.965 0.537 -0.502 -0.211 -0.031 D 124 120 3 125 6 0 0 39 80 -9.730 -8.428 -3.710 -4.908 -4.925 -0.229 IL 125 125 5 125 6 1 1 44 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 126 126 6 126 5 1 1 44 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 119 134 u a - - MP 127 126 6 131 6 2 2 43 84 -10.333 -10.273 -0.022 -8.045 -8.934 -7.068 -2.185 -2.232 -1.602 1.416 -2.232 -3.219 1.843 -2.399 -2.367 1.196 -2.859 -0.643 1.863 -2.542 0.091 -1.577 ML 128 126 6 131 6 1 1 41 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 129 126 6 131 6 1 1 40 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 130 126 6 131 6 0 0 37 77 -9.875 -8.573 -4.370 -5.052 -5.070 -0.171 IL 131 131 5 131 6 1 1 42 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 132 132 6 132 5 1 1 42 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 120 133 g c - - MP 133 132 6 137 4 2 2 41 82 -9.104 -1.390 -0.709 -7.725 -1.908 -2.688 -2.853 0.656 -2.315 -3.691 2.141 -2.092 -2.726 2.383 -3.109 -0.873 0.918 -2.797 -0.684 -1.977 ML 134 132 6 137 4 1 1 37 78 -3.820 -3.587 -0.524 -2.732 0.342 -0.351 -0.099 0.021 MR 135 132 6 137 4 1 1 37 78 -4.831 -3.576 -1.728 -0.788 0.443 -0.437 -0.185 0.033 D 136 132 6 137 4 0 0 36 76 -5.535 -3.776 -0.866 -1.487 IL 137 137 5 137 4 1 1 40 81 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 138 138 6 138 3 1 1 41 82 -0.652 -1.478 -7.716 0.000 0.000 0.000 0.000 [ MATL 39 ] 121 - A - - - ML 139 138 6 141 3 1 1 16 34 -10.092 -0.007 -7.920 1.433 -1.444 -0.857 -1.396 D 140 138 6 141 3 0 0 17 35 -6.174 -1.687 -0.566 IL 141 141 3 141 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 122 - g - - - ML 142 141 3 144 3 1 1 15 33 -10.089 -0.014 -6.843 -0.772 -0.887 0.884 0.040 D 143 141 3 144 3 0 0 15 34 -6.275 -1.788 -0.520 IL 144 144 3 144 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 123 - A - - - ML 145 144 3 147 3 1 1 13 32 -10.080 -0.073 -4.369 1.429 -1.190 -1.746 -0.809 D 146 144 3 147 3 0 0 14 33 -6.585 -2.098 -0.403 IL 147 147 3 147 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 124 - A - - - ML 148 147 3 150 3 1 1 12 30 -10.012 -0.055 -4.773 1.227 -1.595 -1.397 -0.076 D 149 147 3 150 3 0 0 12 31 -7.841 -3.354 -0.155 IL 150 150 3 150 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 125 - C - - - ML 151 150 3 153 2 1 1 1 1 * 0.000 -0.405 1.018 -1.168 -0.368 D 152 150 3 153 2 0 0 0 0 * 0.000 IL 153 153 3 153 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 154 153 3 -1 0 0 0 0 0 [ BEGR 45 ] - - - - - - S 155 95 1 156 5 0 0 27 45 -4.520 -0.074 -8.887 -8.190 -9.991 IL 156 156 2 156 5 1 1 28 46 -2.956 -0.320 -4.635 -6.467 -5.741 0.000 0.000 0.000 0.000 [ MATP 46 ] 141 156 g c - - MP 157 156 2 161 6 2 2 27 45 -10.360 -10.299 -0.009 -9.075 -9.355 -9.750 -2.997 -2.702 -2.890 2.149 -2.889 -4.231 0.198 -3.871 -3.151 2.437 -4.109 -0.900 1.573 -3.431 -1.354 -2.602 ML 158 156 2 161 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 159 156 2 161 6 1 1 25 44 -7.036 -5.765 -1.596 -5.743 -0.836 -3.957 0.521 -0.491 -0.204 -0.021 D 160 156 2 161 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 161 161 5 161 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 162 162 6 162 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 142 155 G C - - MP 163 162 6 167 6 2 2 25 43 -10.361 -10.300 -0.009 -9.076 -9.356 -9.751 -5.152 -3.337 -5.018 0.306 -6.115 -4.451 -0.966 -5.693 -3.315 3.675 -4.657 -1.126 -1.431 -3.363 -3.184 -3.985 ML 164 162 6 167 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 165 162 6 167 6 1 1 24 42 -7.011 -5.740 -1.649 -5.718 -0.811 -3.932 0.329 -0.375 -0.235 0.167 D 166 162 6 167 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 167 167 5 167 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 168 168 6 168 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 143 154 G C - - MP 169 168 6 173 4 2 2 23 41 -2.728 -9.365 -0.253 -6.903 -5.164 -3.123 -5.034 0.424 -6.138 -5.329 -1.183 -5.701 -4.172 3.669 -3.965 -1.154 -1.090 -4.113 -3.207 -3.996 ML 170 168 6 173 4 1 1 23 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 171 168 6 173 4 1 1 23 41 -4.836 -3.865 -1.647 -0.793 0.329 -0.375 -0.235 0.167 D 172 168 6 173 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 173 173 5 173 4 1 1 22 41 -3.693 -4.376 -0.276 -4.364 0.000 0.000 0.000 0.000 IR 174 174 6 174 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 145 - U - - - ML 175 174 6 177 3 1 1 20 37 -10.075 -0.005 -8.729 -2.444 -2.439 -3.129 1.815 D 176 174 6 177 3 0 0 19 37 -6.726 -1.374 -0.726 IL 177 177 3 177 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 146 - G - - - ML 178 177 3 180 3 1 1 18 36 -10.084 -0.005 -8.738 -1.744 -2.658 1.629 -1.150 D 179 177 3 180 3 0 0 18 36 -6.450 -1.367 -0.735 IL 180 180 3 180 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 147 - A - - - ML 181 180 3 183 3 1 1 17 35 -10.090 -0.007 -7.927 1.745 -1.971 -2.300 -2.395 D 182 180 3 183 3 0 0 17 36 -6.247 -1.537 -0.639 IL 183 183 3 183 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 148 - A - - - ML 184 183 3 186 3 1 1 16 34 -10.089 -0.005 -8.743 1.026 -2.947 0.735 -2.557 D 185 183 3 186 3 0 0 16 34 -6.274 -1.541 -0.636 IL 186 186 3 186 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 149 - A - - - ML 187 186 3 189 3 1 1 15 32 -10.091 -0.013 -6.990 1.907 -3.719 -3.457 -3.618 D 188 186 3 189 3 0 0 15 33 -6.194 -1.707 -0.556 IL 189 189 3 189 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 150 - U - - - ML 190 189 3 192 3 1 1 14 31 -4.960 -0.051 -8.737 -0.963 -1.170 -0.998 1.346 D 191 189 3 192 3 0 0 13 30 -5.478 -1.212 -0.873 IL 192 192 3 192 3 1 1 16 33 -1.570 -0.681 -4.661 0.000 0.000 0.000 0.000 [ MATL 55 ] 153 - U - - - ML 193 192 3 195 2 1 1 1 1 * 0.000 -1.301 -1.754 -0.708 1.425 D 194 192 3 195 2 0 0 0 0 * 0.000 IL 195 195 3 195 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 56 ] - - - - - - E 196 195 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME pemK ACC RF02913 DESC pemK RNA LENG 61 MAXL 394 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 03:26:04 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/14.9/R-scape_updates/RF02913/CM NSEQ 1542 EFFN 71.301849 CKSUM 2354109768 STATS LOCAL MSV -7.6294 0.71898 STATS LOCAL VITERBI -8.5281 0.71898 STATS LOCAL FORWARD -3.2726 0.71898 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.33388 1.50891 1.26988 1.45018 1.38629 1.38629 1.38629 1.38629 0.00359 6.32471 6.32471 1.46634 0.26236 0.00000 * 1 0.13552 2.79792 3.62317 3.24165 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.00359 6.32471 6.32471 1.46634 0.26236 1.09861 0.40547 2 3.12089 1.45649 4.67503 0.33757 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.00359 6.32471 6.32471 1.46634 0.26236 1.09861 0.40547 3 0.05170 4.05047 4.13693 4.07467 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.00359 6.32471 6.32471 1.46634 0.26236 1.09861 0.40547 4 0.01320 6.77450 6.48521 4.56145 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.00359 6.32471 6.32471 1.46634 0.26236 1.09861 0.40547 5 2.40688 3.89108 5.43420 0.12204 5 U - - : 1.38629 1.38629 1.38629 1.38629 0.00359 6.32471 6.32471 1.46634 0.26236 1.09861 0.40547 6 4.54021 7.14498 0.01845 4.98813 6 G - - : 1.38629 1.38629 1.38629 1.38629 0.00409 6.32471 6.07850 1.46634 0.26236 1.09861 0.40547 7 0.10003 4.35058 2.54911 5.48758 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.00359 6.32421 6.32421 1.46634 0.26236 0.94138 0.49445 8 3.30277 4.40808 3.67199 0.07730 8 U - - : 1.38629 1.38629 1.38629 1.38629 0.00393 6.32471 6.15114 1.46634 0.26236 1.09861 0.40547 9 0.02459 4.73756 4.89052 4.82727 9 A - - : 1.38629 1.38629 1.38629 1.38629 0.00359 6.32437 6.32437 1.46634 0.26236 1.15988 0.37618 10 5.82033 0.02217 4.87806 4.47848 10 C - - : 1.38629 1.38629 1.38629 1.38629 0.00359 6.32437 6.32437 1.46634 0.26236 0.98630 0.46673 11 3.40035 4.81374 4.10441 0.05973 11 U - - : 1.38629 1.38629 1.38629 1.38629 0.00359 6.32471 6.32471 1.46634 0.26236 1.09861 0.40547 12 6.04424 1.73208 4.68787 0.20886 12 U - - ( 1.38629 1.38629 1.38629 1.38629 0.00707 6.32471 5.24880 1.46634 0.26236 1.09861 0.40547 13 3.54080 0.12308 3.30392 2.99422 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.00708 6.32125 5.24739 1.46634 0.26236 0.51997 0.90273 14 2.98924 0.66644 3.09576 0.93930 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.06727 6.32126 2.76051 1.46634 0.26236 1.59466 0.22687 15 2.71895 2.22029 0.30203 2.45152 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.16776 6.25782 1.88043 1.46634 0.26236 2.64722 0.07348 16 2.59576 1.57066 2.74051 0.42623 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.85278 0.58168 4.21221 1.13409 0.38819 0.02006 3.91914 17 0.51345 2.70637 2.00425 1.60926 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00458 6.31409 5.89189 1.46634 0.26236 0.25458 1.49273 18 0.77623 2.27935 1.20329 1.98553 28 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00387 6.32377 6.17937 1.46634 0.26236 1.25997 0.33360 19 1.78307 1.12342 1.86586 1.04427 29 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00479 6.32349 5.81385 1.46634 0.26236 1.30310 0.31703 20 1.85654 1.28919 1.43878 1.10541 30 u - - _ 1.38629 1.38629 1.38629 1.38629 0.24872 6.32230 1.52141 1.46634 0.26236 0.81938 0.58108 21 1.07129 0.95401 2.65170 1.60093 31 c - - _ 1.38629 1.38629 1.38629 1.38629 1.00333 0.47265 4.60596 3.08596 0.04676 1.14055 0.38514 22 1.72276 2.83707 0.39469 2.41981 108 G - - > 1.38629 1.38629 1.38629 1.38629 0.04365 6.15789 3.20417 1.46634 0.26236 0.14798 1.98374 23 3.00419 0.34583 1.88174 2.40279 109 C - - > 1.38629 1.38629 1.38629 1.38629 0.00378 6.27252 6.27252 1.46634 0.26236 0.07114 2.67845 24 0.96264 3.15645 0.65245 2.90461 110 G - - > 1.38629 1.38629 1.38629 1.38629 0.00359 6.32444 6.32444 1.46634 0.26236 1.00469 0.45595 25 3.06114 3.42268 0.12072 3.37378 111 G - - > 1.38629 1.38629 1.38629 1.38629 0.05295 3.00990 6.08577 0.07116 2.67818 1.09861 0.40547 26 3.85652 0.21071 3.23093 2.04537 114 C - - < 1.38629 1.38629 1.38629 1.38629 0.00464 6.32423 5.86401 1.46634 0.26236 1.18476 0.36502 27 3.05124 0.79510 3.03532 0.79164 115 u - - < 1.38629 1.38629 1.38629 1.38629 0.00877 6.32318 4.97143 1.46634 0.26236 0.88898 0.52946 28 3.03602 0.69816 1.03112 2.32412 116 c - - < 1.38629 1.38629 1.38629 1.38629 0.03820 6.31908 3.33324 1.46634 0.26236 1.81386 0.17796 29 3.11945 2.00519 0.27298 2.81218 117 G - - - 1.38629 1.38629 1.38629 1.38629 0.00729 6.28462 5.22208 1.46634 0.26236 0.75883 0.63152 30 2.40659 1.03801 0.72161 2.66288 118 g - - < 1.38629 1.38629 1.38629 1.38629 0.01124 6.30087 4.67354 1.46634 0.26236 1.71969 0.19738 31 1.55872 1.34223 1.67245 1.07721 119 u - - < 1.38629 1.38629 1.38629 1.38629 0.01358 6.29683 4.45292 1.46634 0.26236 2.90971 0.05603 32 2.46441 1.05188 0.79061 2.18843 120 g - - < 1.38629 1.38629 1.38629 1.38629 0.00373 6.28698 6.28698 1.46634 0.26236 0.08827 2.47117 33 0.31717 2.57725 1.99296 2.82141 121 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00555 6.32471 5.58895 1.46634 0.26236 1.09861 0.40547 34 2.30837 2.08869 0.65552 1.35652 122 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01055 6.32276 4.74485 1.46634 0.26236 1.40783 0.28061 35 0.31300 2.34085 2.92818 2.12856 123 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05496 6.31584 2.96280 1.46634 0.26236 2.07089 0.13476 36 0.43337 2.99720 2.65697 1.46277 124 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04175 6.26469 3.24441 1.46634 0.26236 3.57014 0.02856 37 1.78604 0.53958 2.29313 1.90761 125 C - - _ 1.38629 1.38629 1.38629 1.38629 0.59127 0.83331 4.44274 1.08480 0.41244 0.34806 1.22438 38 2.21118 0.83612 1.04513 2.25005 133 c - - > 1.38629 1.38629 1.38629 1.38629 0.00642 6.28985 5.39290 1.46634 0.26236 1.26784 0.33051 39 1.26071 1.82423 1.10857 1.49088 134 g - - > 1.38629 1.38629 1.38629 1.38629 0.00504 6.29683 5.74793 1.46634 0.26236 1.28238 0.32486 40 2.91975 0.74426 0.99212 2.30078 135 c - - > 1.38629 1.38629 1.38629 1.38629 0.01925 6.30300 4.06077 1.46634 0.26236 2.15866 0.12271 41 2.49430 3.29973 0.14275 4.29874 136 G - - - 1.38629 1.38629 1.38629 1.38629 0.00372 6.28883 6.28883 1.46634 0.26236 0.16474 1.88461 42 2.80659 1.01413 0.64300 2.97276 137 G - - > 1.38629 1.38629 1.38629 1.38629 0.00360 6.32212 6.32212 1.46634 0.26236 0.71491 0.67184 43 0.90222 2.90922 0.72114 2.92594 138 g - - > 1.38629 1.38629 1.38629 1.38629 0.00440 6.32423 5.95359 1.46634 0.26236 1.18476 0.36502 44 2.15490 3.41037 0.19282 3.63354 139 G - - > 1.38629 1.38629 1.38629 1.38629 0.05353 3.02545 5.63064 0.07234 2.66228 0.77185 0.62019 45 1.01710 3.62041 0.97030 1.45835 141 g - - < 1.38629 1.38629 1.38629 1.38629 0.00360 6.32292 6.32292 1.46634 0.26236 0.96310 0.48079 46 3.08453 4.23500 0.07608 4.34051 142 G - - < 1.38629 1.38629 1.38629 1.38629 0.00359 6.32387 6.32387 1.46634 0.26236 1.24494 0.33962 47 2.84578 4.99158 0.08802 3.94390 143 G - - < 1.38629 1.38629 1.38629 1.38629 0.17195 1.88293 5.14315 0.02341 3.76647 0.85783 0.55179 48 3.47857 3.56309 3.93274 0.08207 145 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00770 6.32066 5.13801 1.46634 0.26236 0.79861 0.59775 49 3.13450 3.74590 0.19811 2.18405 146 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00361 6.31905 6.31905 1.46634 0.26236 0.59973 0.79619 50 0.12838 2.92033 3.24899 3.58462 147 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00553 6.32332 5.59478 1.46634 0.26236 0.75433 0.63550 51 0.64083 4.15986 0.82347 3.98305 148 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00360 6.32279 6.32279 1.46634 0.26236 0.78148 0.61199 52 0.03804 4.46150 4.27865 4.42980 149 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00962 6.32434 4.85551 1.46634 0.26236 0.97660 0.47255 53 2.37190 2.40753 2.10009 0.36498 150 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03811 3.33580 6.31871 0.37521 1.16202 0.37870 1.15439 54 2.71683 3.07615 1.79949 0.32518 153 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00359 6.32471 6.32471 1.46634 0.26236 1.09861 0.40547 55 3.99113 0.09956 4.42342 2.74431 154 C - - > 1.38629 1.38629 1.38629 1.38629 0.00359 6.32471 6.32471 1.46634 0.26236 1.09861 0.40547 56 4.35381 0.08591 4.16854 2.91890 155 C - - > 1.38629 1.38629 1.38629 1.38629 0.00359 6.32471 6.32471 1.46634 0.26236 1.09861 0.40547 57 1.45112 1.00358 3.35655 1.00985 156 c - - > 1.38629 1.38629 1.38629 1.38629 0.00359 6.32471 6.32471 1.46634 0.26236 1.09861 0.40547 58 0.21609 4.92295 1.71888 4.85479 157 A - - ) 1.38629 1.38629 1.38629 1.38629 0.00359 6.32471 6.32471 1.46634 0.26236 1.09861 0.40547 59 4.13301 4.83467 4.48544 0.03589 158 U - - : 1.38629 1.38629 1.38629 1.38629 0.00359 6.32471 6.32471 1.46634 0.26236 1.09861 0.40547 60 4.57466 7.19763 0.01254 6.56688 159 G - - : 1.38629 1.38629 1.38629 1.38629 0.00359 6.32432 6.32432 1.46634 0.26236 1.09861 0.40547 61 0.76509 3.26942 1.09796 1.81321 160 a - - : 1.38629 1.38629 1.38629 1.38629 0.00180 6.32253 * 1.46634 0.26236 0.00000 * //