INFERNAL1/a [1.1.5 | Sep 2023] NAME patAB ACC RF02907 DESC patAB leader STATES 175 NODES 46 CLEN 57 W 73 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 22:52:52 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02907/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.839844 CKSUM 556157167 NULL 0.000 0.000 0.000 0.000 GA 92.00 TC 92.70 NC 44.30 EFP7GF -6.7619 0.72817 ECMLC 0.55093 -6.55326 4.63144 1600000 569261 0.002108 ECMGC 0.42136 -15.78435 -1.58104 1600000 158913 0.002517 ECMLI 0.55806 -4.33586 5.86891 1600000 356793 0.003363 ECMGI 0.47539 -10.51200 1.20475 1600000 104981 0.003810 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 73 92 -6.911 -7.118 -0.055 -5.532 IL 1 1 2 1 4 1 15 77 97 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 15 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 15 73 92 -7.930 -0.021 -6.584 1.704 -2.302 -1.941 -1.838 D 4 2 3 5 3 0 9 71 91 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 14 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 14 72 91 -7.930 -0.021 -6.584 -1.658 1.601 -2.479 -1.089 D 7 5 3 8 3 0 9 70 90 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 13 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 13 71 90 -7.930 -0.021 -6.584 1.704 -2.302 -1.941 -1.838 D 10 8 3 11 3 0 8 69 89 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 12 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 12 70 89 -7.930 -0.021 -6.584 -1.658 1.601 -2.479 -1.089 D 13 11 3 14 3 0 7 68 88 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 12 72 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 11 69 88 -7.930 -0.021 -6.584 1.704 -2.302 -1.941 -1.838 D 16 14 3 17 3 0 6 67 87 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 11 71 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 10 67 87 -7.930 -0.021 -6.584 1.704 -2.302 -1.941 -1.838 D 19 17 3 20 3 0 5 66 86 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 10 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 9 66 86 -7.930 -0.021 -6.584 1.704 -2.302 -1.941 -1.838 D 22 20 3 23 3 0 4 65 85 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 9 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - C - - - ML 24 23 3 26 3 1 9 65 85 -8.323 -0.019 -6.640 -1.658 1.601 -2.479 -1.089 D 25 23 3 26 3 0 4 64 84 -5.620 -0.734 -1.403 IL 26 26 3 26 3 1 8 66 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 57 - A - - MR 27 26 3 29 3 1 8 64 84 -8.323 -0.019 -6.640 1.704 -2.302 -1.941 -1.838 D 28 26 3 29 3 0 2 63 82 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 7 65 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 56 - U - - MR 30 29 3 32 3 1 7 63 83 -8.323 -0.019 -6.640 -1.422 -1.430 -2.153 1.600 D 31 29 3 32 3 0 1 62 81 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 6 64 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 55 - U - - MR 33 32 3 35 3 1 6 62 82 -8.323 -0.019 -6.640 -1.422 -1.430 -2.153 1.600 D 34 32 3 35 3 0 1 61 80 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 5 63 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 54 - U - - MR 36 35 3 38 3 1 6 61 81 -8.323 -0.019 -6.640 -1.422 -1.430 -2.153 1.600 D 37 35 3 38 3 0 0 60 79 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 4 62 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 53 - U - - MR 39 38 3 41 3 1 5 60 80 -8.323 -0.019 -6.640 -1.422 -1.430 -2.153 1.600 D 40 38 3 41 3 0 0 59 78 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 4 61 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 52 - U - - MR 42 41 3 44 3 1 5 59 79 -8.323 -0.019 -6.640 -1.422 -1.430 -2.153 1.600 D 43 41 3 44 3 0 0 58 77 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 3 60 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 51 - U - - MR 45 44 3 47 3 1 4 58 78 -8.323 -0.019 -6.640 -1.422 -1.430 -2.153 1.600 D 46 44 3 47 3 0 0 57 76 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 3 59 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 50 - A - - MR 48 47 3 50 5 1 4 57 77 -7.063 -0.040 -6.879 -7.091 -7.983 1.704 -2.302 -1.941 -1.838 D 49 47 3 50 5 0 0 56 75 -5.352 -0.707 -2.978 -4.409 -2.404 IR 50 50 3 50 5 1 2 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 9 49 A U - - MP 51 50 3 55 6 2 5 56 76 -9.093 -9.033 -0.021 -7.809 -8.089 -8.484 -3.737 -2.783 -3.760 3.296 -4.071 -5.128 0.225 -3.805 -3.654 1.137 -4.199 -0.268 -0.192 -4.325 -1.716 -2.597 ML 52 50 3 55 6 1 1 55 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 3 55 6 1 1 55 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 3 55 6 0 0 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 10 48 G C - - MP 57 56 6 61 6 2 4 54 74 -9.093 -9.033 -0.021 -7.809 -8.089 -8.484 -4.678 -3.064 -4.772 0.242 -5.143 -4.669 -0.523 -5.010 -4.286 3.623 -4.628 -0.760 -0.910 -4.426 -2.557 -3.649 ML 58 56 6 61 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 53 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 54 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 11 47 A U - - MP 63 62 6 67 4 2 2 52 72 -6.911 -7.118 -0.055 -5.532 -3.737 -2.783 -3.760 3.296 -4.071 -5.128 0.225 -3.805 -3.654 1.137 -4.199 -0.268 -0.192 -4.325 -1.716 -2.597 ML 64 62 6 67 4 1 1 53 72 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 4 1 1 52 72 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 66 62 6 67 4 0 0 51 71 -4.568 -4.250 -2.265 -0.520 IL 67 67 5 67 4 1 1 54 74 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 68 68 6 68 3 1 1 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 12 - A - - - ML 69 68 6 71 3 1 1 50 69 -7.930 -0.021 -6.584 1.704 -2.302 -1.941 -1.838 D 70 68 6 71 3 0 0 49 68 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 13 - U - - - ML 72 71 3 74 3 1 1 49 68 -7.930 -0.021 -6.584 -1.422 -1.430 -2.153 1.600 D 73 71 3 74 3 0 0 47 67 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 1 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 14 - G - - - ML 75 74 3 77 3 1 1 48 67 -8.323 -0.019 -6.640 -1.507 -2.715 1.706 -2.102 D 76 74 3 77 3 0 0 46 66 -5.620 -0.734 -1.403 IL 77 77 3 77 3 1 1 48 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 46 - G - - MR 78 77 3 80 5 1 1 47 66 -7.063 -0.040 -6.879 -7.091 -7.983 -1.507 -2.715 1.706 -2.102 D 79 77 3 80 5 0 0 45 65 -5.352 -0.707 -2.978 -4.409 -2.404 IR 80 80 3 80 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 15 45 A U - - MP 81 80 3 85 6 2 2 46 65 -9.093 -9.033 -0.021 -7.809 -8.089 -8.484 -3.737 -2.783 -3.760 3.296 -4.071 -5.128 0.225 -3.805 -3.654 1.137 -4.199 -0.268 -0.192 -4.325 -1.716 -2.597 ML 82 80 3 85 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 3 85 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 45 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 16 44 A U - - MP 87 86 6 91 6 2 2 44 63 -9.093 -9.033 -0.021 -7.809 -8.089 -8.484 -3.737 -2.783 -3.760 3.296 -4.071 -5.128 0.225 -3.805 -3.654 1.137 -4.199 -0.268 -0.192 -4.325 -1.716 -2.597 ML 88 86 6 91 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 43 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 17 43 A U - - MP 93 92 6 97 6 2 2 42 61 -9.093 -9.033 -0.021 -7.809 -8.089 -8.484 -3.737 -2.783 -3.760 3.296 -4.071 -5.128 0.225 -3.805 -3.654 1.137 -4.199 -0.268 -0.192 -4.325 -1.716 -2.597 ML 94 92 6 97 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 41 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 18 42 A U - - MP 99 98 6 103 6 2 2 40 59 -9.093 -9.033 -0.021 -7.809 -8.089 -8.484 -3.737 -2.783 -3.760 3.296 -4.071 -5.128 0.225 -3.805 -3.654 1.137 -4.199 -0.268 -0.192 -4.325 -1.716 -2.597 ML 100 98 6 103 6 1 1 38 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 39 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 19 41 G C - - MP 105 104 6 109 6 2 2 38 57 -9.093 -9.033 -0.021 -7.809 -8.089 -8.484 -4.678 -3.064 -4.772 0.242 -5.143 -4.669 -0.523 -5.010 -4.286 3.623 -4.628 -0.760 -0.910 -4.426 -2.557 -3.649 ML 106 104 6 109 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 37 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 20 40 G C - - MP 111 110 6 115 4 2 2 36 55 -6.911 -7.118 -0.055 -5.532 -4.678 -3.064 -4.772 0.242 -5.143 -4.669 -0.523 -5.010 -4.286 3.623 -4.628 -0.760 -0.910 -4.426 -2.557 -3.649 ML 112 110 6 115 4 1 1 36 56 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 4 1 1 36 55 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 114 110 6 115 4 0 0 35 54 -4.568 -4.250 -2.265 -0.520 IL 115 115 5 115 4 1 1 38 57 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 21 - A - - - ML 117 116 6 119 3 1 1 33 52 -7.930 -0.021 -6.584 1.704 -2.302 -1.941 -1.838 D 118 116 6 119 3 0 0 32 51 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 22 - G - - - ML 120 119 3 122 3 1 1 32 51 -7.930 -0.021 -6.584 -1.507 -2.715 1.706 -2.102 D 121 119 3 122 3 0 0 31 50 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 34 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 23 - C - - - ML 123 122 3 125 3 1 1 31 50 -8.323 -0.019 -6.640 -1.658 1.601 -2.479 -1.089 D 124 122 3 125 3 0 0 30 48 -5.620 -0.734 -1.403 IL 125 125 3 125 3 1 1 32 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 39 - C - - MR 126 125 3 128 3 1 1 30 49 -8.323 -0.019 -6.640 -1.658 1.601 -2.479 -1.089 D 127 125 3 128 3 0 0 28 47 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 31 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 38 - U - - MR 129 128 3 131 3 1 1 29 48 -8.323 -0.019 -6.640 -1.422 -1.430 -2.153 1.600 D 130 128 3 131 3 0 0 27 46 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 30 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 37 - C - - MR 132 131 3 134 5 1 1 28 47 -7.063 -0.040 -6.879 -7.091 -7.983 -1.658 1.601 -2.479 -1.089 D 133 131 3 134 5 0 0 26 45 -5.352 -0.707 -2.978 -4.409 -2.404 IR 134 134 3 134 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 24 36 u g - - MP 135 134 3 139 6 2 2 27 46 -9.093 -9.033 -0.021 -7.809 -8.089 -8.484 -4.022 -3.940 -3.740 -0.281 -2.519 -4.176 1.766 -3.286 -3.780 -0.077 -4.079 -1.943 0.927 -4.114 2.961 -2.654 ML 136 134 3 139 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 3 139 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 3 139 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 25 35 G C - - MP 141 140 6 145 6 2 2 25 44 -9.093 -9.033 -0.021 -7.809 -8.089 -8.484 -4.678 -3.064 -4.772 0.242 -5.143 -4.669 -0.523 -5.010 -4.286 3.623 -4.628 -0.760 -0.910 -4.426 -2.557 -3.649 ML 142 140 6 145 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 26 34 A U - - MP 147 146 6 151 6 2 2 23 42 -9.093 -9.033 -0.021 -7.809 -8.089 -8.484 -3.737 -2.783 -3.760 3.296 -4.071 -5.128 0.225 -3.805 -3.654 1.137 -4.199 -0.268 -0.192 -4.325 -1.716 -2.597 ML 148 146 6 151 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 27 33 C G - - MP 153 152 6 157 4 2 2 21 40 -6.911 -7.118 -0.055 -5.532 -4.484 -4.384 -4.185 -0.622 -2.917 -4.605 3.530 -3.721 -4.232 -0.372 -4.500 -2.330 0.604 -4.557 -0.622 -3.074 ML 154 152 6 157 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 156 152 6 157 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 157 157 5 157 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 158 158 6 158 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 28 - a - - - ML 159 158 6 161 3 1 1 18 36 -7.930 -0.021 -6.584 0.700 -1.366 0.490 -0.777 D 160 158 6 161 3 0 0 17 36 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 29 - C - - - ML 162 161 3 164 3 1 1 16 35 -7.930 -0.021 -6.584 -1.658 1.601 -2.479 -1.089 D 163 161 3 164 3 0 0 16 34 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 30 - A - - - ML 165 164 3 167 3 1 1 15 33 -7.930 -0.021 -6.584 1.704 -2.302 -1.941 -1.838 D 166 164 3 167 3 0 0 15 33 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 31 - U - - - ML 168 167 3 170 3 1 1 13 32 -7.930 -0.021 -6.584 -1.422 -1.430 -2.153 1.600 D 169 167 3 170 3 0 0 13 32 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 32 - U - - - ML 171 170 3 173 2 1 1 1 1 * 0.000 -1.422 -1.430 -2.153 1.600 D 172 170 3 173 2 0 0 0 0 * 0.000 IL 173 173 3 173 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 174 173 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME patAB ACC RF02907 DESC patAB leader LENG 57 MAXL 143 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 22:52:52 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02907/CM NSEQ 2 EFFN 1.636719 CKSUM 556157167 STATS LOCAL MSV -7.7727 0.72817 STATS LOCAL VITERBI -8.9744 0.72817 STATS LOCAL FORWARD -3.2628 0.72817 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.28202 1.46298 1.56169 1.26870 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.23314 2.86904 2.63013 2.53664 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.40084 0.31888 2.96435 2.03410 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23314 2.86904 2.63013 2.53664 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.40084 0.31888 2.96435 2.03410 4 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.23314 2.86904 2.63013 2.53664 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23314 2.86904 2.63013 2.53664 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.23314 2.86904 2.63013 2.53664 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.40084 0.31888 2.96435 2.03410 8 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.52909 2.35288 1.53492 2.29967 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.35019 2.84913 0.24115 2.79644 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.52846 2.35431 1.53494 2.30201 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23314 2.86904 2.63013 2.53664 12 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.26993 2.29356 2.77025 0.31044 13 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.31012 3.12764 0.23594 2.70159 14 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.52880 2.35353 1.53493 2.30075 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.52845 2.35431 1.53494 2.30202 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.52835 2.35455 1.53494 2.30241 17 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 0.52835 2.35454 1.53494 2.30240 18 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.35142 2.85032 0.24077 2.79818 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.35113 2.85004 0.24086 2.79777 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23314 2.86904 2.63013 2.53664 21 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.31012 3.12764 0.23594 2.70159 22 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.40084 0.31888 2.96435 2.03410 23 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.59808 1.41021 2.34249 0.53545 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.35050 2.84943 0.24105 2.79688 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.52842 2.35439 1.53494 2.30215 26 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.83244 0.34996 2.55667 1.83977 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.91324 2.28591 1.06752 1.87577 28 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.40084 0.31888 2.96435 2.03410 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.23314 2.86904 2.63013 2.53664 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.26993 2.29356 2.77025 0.31044 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.26993 2.29356 2.77025 0.31044 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.11399 2.72347 0.30305 2.58982 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.53560 1.78822 2.17083 0.44715 34 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 3.02161 0.28078 2.68223 2.05827 35 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 1.90315 2.51727 0.39234 2.35656 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.40084 0.31888 2.96435 2.03410 37 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.26993 2.29356 2.77025 0.31044 38 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.40084 0.31888 2.96435 2.03410 39 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 3.01535 0.28162 2.67977 2.05705 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 3.01662 0.28145 2.68027 2.05730 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53489 1.78818 2.17061 0.44729 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53591 1.78823 2.17092 0.44710 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.53716 1.78829 2.17129 0.44686 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.53866 1.78836 2.17174 0.44658 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.31012 3.12764 0.23594 2.70159 46 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.53544 1.78821 2.17078 0.44719 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 3.02125 0.28083 2.68209 2.05820 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.53794 1.78833 2.17153 0.44671 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 0.23314 2.86904 2.63013 2.53664 50 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.26993 2.29356 2.77025 0.31044 51 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.26993 2.29356 2.77025 0.31044 52 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.26993 2.29356 2.77025 0.31044 53 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.26993 2.29356 2.77025 0.31044 54 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.26993 2.29356 2.77025 0.31044 55 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.26993 2.29356 2.77025 0.31044 56 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 0.23314 2.86904 2.63013 2.53664 57 A - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //