# STOCKHOLM 1.0
#=GF ID S808
#=GF AC RF02897
#=GF DE Staphylococcus sRNA 808
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 76.0
#=GF NC 41.6
#=GF TC 76.8
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 27035918
#=GF RT Staphylococcus aureus Transcriptome Architecture: From Laboratory to
#=GF RT Infection-Mimicking Conditions.
#=GF RA Mader U, Nicolas P, Depke M, Pane-Farre J, Debarbouille M, van der
#=GF RA Kooi-Pol MM, Guerin C, Derozier S, Hiron A, Jarmer H, Leduc A, Michalik S,
#=GF RA Reilman E, Schaffer M, Schmidt F, Bessieres P, Noirot P, Hecker M, Msadek
#=GF RA T, Volker U, van Dijl JM
#=GF RL PLoS Genet. 2016;12:e1005962.
#=GF RN [2]
#=GF RM 29515534
#=GF RT Assessment of Bona Fide sRNAs in Staphylococcus aureus.
#=GF RA Liu W, Rochat T, Toffano-Nioche C, Le Lam TN, Bouloc P, Morvan C
#=GF RL Front Microbiol. 2018;9:228.
#=GF CC Other name: Srn9345[2]. Own promoter plus 3'UTR of SAOUHSC_02016.[2]
#=GF CC Highly expressed under all conditions tested. Northern blot transcript
#=GF CC confirmed in exponentially growing and stationary cells in three
#=GF CC cultivation media. Trans-encoded.[1]
#=GF WK Staphylococcus_aureus
#=GF SQ 4

CP000253.1/1925082-1924828 CGGUCUAUUGCCAGAAGACAAGCGGUUGCAACUUAAAGACUACUUUAUCAAGCAGAUUAGGGCGUACAUGGAUGGUAAAAUACCGGUUGCCACUGUCUCUAAUGAGUCAAGCGCUUCAAGUAAUACAGUUAAACCAGUUGCAAGUGCAUGGAAACGUAAUAAAUAUGGUACUUACUACAUGGAAGAAAGUGCUAGAUUCA
KJ140076.1/40568-40822     CGGGCUAAUACCAGAAGACAAACGUUUACAACUUAAAGACUACUUCAUCAAACAGAUUAGGGCGUACAUGGAUGGUAAAAUACCAGUUGCCACUGUCUCUAAUGAGUCAAGCGCUUCAAGUAAUACAGUUAAACCAGUUGCGAGUGCAUGGAAACGAAAUAAAUAUGGCACUUACUACAUGGAAGAGAGCGCUAGAUUCA
DQ530360.1/42037-42291     CGGUCUAUUGCCAGAAGACAAGCGGUUGCAACUUAAAGACUACUUUAUCAAGCAGAUUAGGGCGUACAUGGAUGGUAAAAUACCGGUUGCCACUGUCUCUAAUGAGUCAAGCGCUUCAAGUAAUACAGUUAAACCAGUUGCGAGUGCAUGGAAACGUAAUAAAUAUGGUACUUACUACAUGGAAGAAAGUGCUAGAUUCA
KJ804259.1/41733-41987     AGGUUUAUUACCUAAAGACAAACAGUUACAAUUAAAAGAUUAUUUCAUUAAACAAAUCAGACAAUAUAUGGAUGGUAAAAUACCUACUGCAACAGUUGUUAAAAGUACAAGUGCUUCUAGUAACACUGUUAAACCAGUAGCAUCUGGUUGGAAACGUAAUAAUUACGGCACUUAUUAUAAAUCAGAAAAUGCAACUUAUA
#=GC SS_cons               :[[[--[[[[[[,,,,,,((-(((-((((((((----((((---((((-((((,,,,,,,<<<<-<<-<<<<<______>>->>>>>>>>>,,<<-<<<____>>>->>,,,))))---))))---))))-----))))))))-)))-)),,,,,,,,,,,,,,,<<<<<<<<-<<_______>>->>>>>>>>,,,,,,
#=GC RF                    cGGucUauugCCagAAGACaAgCgguugCaacuuAAAgacuAcUuuaucaagCAgAUuAGggcgUacAcGGauGGUAAAauACCggucgccACuGUcucUAAugaguCaAGcGcuuCaAguaauACaguuAAACCaguuGcaagcGcauGGAAACGuAAUAAaUAugGcacuuAcuAcAuggaagAaagugCcagaUucA

CP000253.1/1925082-1924828 CAAACGGCAAUCAACCAAU---CACAGUAAGAAAAGUGGGGCCAUUCUUAUCUUGUCC
KJ140076.1/40568-40822     CAAACGGCAAUCAACCAAU---CACAGUAAGAAAAGUUGGACCAUUCUUAUCAUGUCC
DQ530360.1/42037-42291     CAAACGGCAAUCAACCAAU---CACAGUAAGAAAAGUGGGGCCAUUCUUAUCUUGUCC
KJ804259.1/41733-41987     GCAAUGGUAACACACCAAUUAUCACA---CGUACAGUAGGACCAUUUAGAAGCUGUCC
#=GC SS_cons               ,,,,,]]]]]]--]]]:::...:<<<<<<<<<<--<<___>>-->>>>>>>-->>>::
#=GC RF                    caAAcGGcaaucaaCCAAU...CaCaguaaGaaaAGuaGGaCCAuuCuuaccuuGuCC
//
