# STOCKHOLM 1.0
#=GF ID S774
#=GF AC RF02896
#=GF DE Staphylococcus sRNA 774
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 48.0
#=GF NC 47.3
#=GF TC 48.0
#=GF SE Argasinska J
#=GF SS Predicted; R-scape;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 27035918
#=GF RT Staphylococcus aureus Transcriptome Architecture: From Laboratory to
#=GF RT Infection-Mimicking Conditions.
#=GF RA Mader U, Nicolas P, Depke M, Pane-Farre J, Debarbouille M, van der
#=GF RA Kooi-Pol MM, Guerin C, Derozier S, Hiron A, Jarmer H, Leduc A, Michalik S,
#=GF RA Reilman E, Schaffer M, Schmidt F, Bessieres P, Noirot P, Hecker M, Msadek
#=GF RA T, Volker U, van Dijl JM
#=GF RL PLoS Genet. 2016;12:e1005962.
#=GF CC Northern blot transcript confirmed in exponentially growing and stationary
#=GF CC cells in three cultivation media. Trans-encoded.[1]
#=GF WK Staphylococcus_aureus
#=GF SQ 4

CP000253.1/1865129-1865035         AAUUAAAUUCAAAAAGUUCUUGACUUUAGGUUUUUGAUUAUGGUAUAUUAAUUAGGUA--AUUCA------AAAUAAUAUUAGCGCGGGAUGGAGCAGUUCGG
#=GR CP000253.1/1865129-1865035 PP **********************************************************..*****......********************************
AEUN01000433.1/10636-10729         -AAUAAAUACAAAUAAUUGUUGACUUUAAACAUUUUAUUAUGGUAUAUUAAAUUAGUA--GUUAA------AAAUAAUAUUAUCGCGGGAUGGAGCAGUUCGG
#=GR AEUN01000433.1/10636-10729 PP .9999*****************************************************..*****......********************************
AP008934.1/1003624-1003720         AAUUAAUUUUAAAAAACG-UUGACAUUAAGUAAAUGUUUAUGAUAUGCUGAUUGGGUAGGAGUCA-----UAAAUAUUAUUAUCGCGGGAUGGAGCAGUUCGG
#=GR AP008934.1/1003624-1003720 PP *****************9.**************************************97789***.....*********************************
AM295250.1/1415901-1415802         AUUUUGUUAAAAAAAGAU-UUGACAUUACUUAACAAUACAUGAUAUACUAAUAAAGUA--GUUCAAAUUACUAAUAAUAUUACCGCGGGAUGGAGCAGUUCGG
#=GR AM295250.1/1415901-1415802 PP ******************.***************************************..***982222245778****************************
#=GC SS_cons                       :::((((,,<<<______.>>>,<<_______>>,,))))::::::::::::::::::..<<<__....._____>>>:::::::::::::::::::::::::
#=GC RF                            AauUaacUacAAAAAauu.UUgAccUUAagUAggugguuAUGaUAUAuUAAuuaaGUA..auUcA.....uaAAUAauAUUAuCGCGGGAUGGAGCAGUUCGG
//
