# STOCKHOLM 1.0
#=GF ID S414
#=GF AC RF02895
#=GF DE Staphylococcus sRNA 414
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 45.0
#=GF NC 44.8
#=GF TC 45.1
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 27035918
#=GF RT Staphylococcus aureus Transcriptome Architecture: From Laboratory to
#=GF RT Infection-Mimicking Conditions.
#=GF RA Mader U, Nicolas P, Depke M, Pane-Farre J, Debarbouille M, van der
#=GF RA Kooi-Pol MM, Guerin C, Derozier S, Hiron A, Jarmer H, Leduc A, Michalik S,
#=GF RA Reilman E, Schaffer M, Schmidt F, Bessieres P, Noirot P, Hecker M, Msadek
#=GF RA T, Volker U, van Dijl JM
#=GF RL PLoS Genet. 2016;12:e1005962.
#=GF CC Antisense of an annotated CDS (SAOUHSC_1422) but was considered an
#=GF CC trans-encoded sRNA rather than a typical antisense RNA [1]. Target
#=GF CC prediction revealed enrichment of iron-coding genes and genes with
#=GF CC function in cofator metabolism. 
#=GF WK Staphylococcus_aureus
#=GF SQ 5

CP000253.1/1364078-1364252     AUUUUUUAACUUGAG-CAUCUUUUAAUCCUUUACCAGUUAAAUGUAUCACUUGAUAUUGUUGUAAUAAUGCAUCUAAGUUUUCGCGAAUAAUGCUAUUUAAUUUUUUACUUCCUAAGCUUCCACCCAUAACGAGUAAAACUUUUUUAUUUUCAUUAAAGCCUGUUAAUUGAUAACC
MPHV01000014.1/55349-55175     CUUUUUUAAUUGAAU-CAUCUACUAAACCUUUACCAGUUAAAUGUAUGACUUGGUAUUGGUGUAAUAAUGCUUCUAGGUUUUCACGAAUAGCAUCAUUUAAUUUUUUACUGCCUAAGCUACCACCCAUAACAAGUAAAACCUUUUUAUCUUGUUUAAAUUCAGUUAAUUGAUAGCC
LUGM01000002.1/1454968-1454794 GGUCUUGUAGUUGUU-CAUCAAGUAAUCCUUUACCAGUUAAAUGAAUAAUUUGAUAAGUUUUUAAUAAACCAUCUAAAUUGCCUCGAAUAAUAUCAUUUAACUUUCUACUACCUAAACUGCCGCCCAUAACAAGUAACACUUUUUUGUCAUUAGUAAAGUUAGUUAAAUGAUAACC
CP000029.1/1010967-1011141     U-UUUAUUGAUUGAGUCAUCAACAAGUCCUUUUCCAGUUAAGUGUAUAAUUUGAUAAUCAUGGAGAAGUGCCUCAAUAUUUUGACGAAUGAUAUUAUUAAGUUUUUUACUACCUAAACUUCCUCCCAUGACUAAUAACACUUUUUUAUUUUUAUCAAAAUCAGUGAGUUGAUAUCC
AP006716.1/1527426-1527252     UAGCAUCAAUACUAG-AAUCAACUAGUCCAUGACCUGUUAAAUGAAUAAUUUGAUAGUCUUGAAGUAAUGCUUCUAAAUUUUCACGUAUAGCUUGAUUAAGCUUUUUACUACCUAAGCUACCACCCAUGACGAGUAAUACUUUUUUUGAGGCGUCGAAACCUGUUAACUGGUAUCC
#=GC SS_cons                   :::::::::::::::.:(((--(((((-(((((,,,<<<<---<<<<<____>>>>>----->>>>,,,<<<<----<<____>>----->>>>,,,,,,,,,<<<<<<<<____________________>>>>>>>>,,,,,,,,,,,,,,,)))))---)))))--)))::::
#=GC RF                        uuUuUUuaAuUugAg.cAuCaAcuaauCcuUuaCCAguUaAAUcuAucAuUUgaUagUuuUGuAauAAUgcauCUAaguUUUcacGAAUAaugcuAUUuAauUUuuUACUcCCUAAgCUaCCaCCCAUaACgAGUAaaACUUUUUUaUuuUuaUuaAaguCaguuaguUGaUAuCC
//
