# STOCKHOLM 1.0
#=GF ID SprC
#=GF AC RF02890
#=GF DE Small pathogenicity island RNA C (srn_3610)
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 100.0
#=GF NC 69.3
#=GF TC 157.3
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF DR GO; 0003729; mRNA binding;
#=GF DR GO; 0040033; sRNA-mediated gene silencing;
#=GF RN [1]
#=GF RM 26240382
#=GF RT A bacterial regulatory RNA attenuates virulence, spread and human host
#=GF RT cell phagocytosis.
#=GF RA Le Pabic H, Germain-Amiot N, Bordeau V, Felden B
#=GF RL Nucleic Acids Res. 2015;43:9232-9248.
#=GF RN [2]
#=GF RM 27596601
#=GF RT Insights into the regulation of small RNA expression: SarA represses the
#=GF RT expression of two sRNAs in Staphylococcus aureus.
#=GF RA Mauro T, Rouillon A, Felden B
#=GF RL Nucleic Acids Res. 2016;44:10186-10200.
#=GF RN [3]
#=GF RM 16183745
#=GF RT Small RNA genes expressed from Staphylococcus aureus genomic and
#=GF RT pathogenicity islands with specific expression among pathogenic strains.
#=GF RA Pichon C, Felden B
#=GF RL Proc Natl Acad Sci U S A. 2005;102:14249-14254.
#=GF CC Reduces autolysin ALT expression by binding to the mRNA and preventing
#=GF CC ribosome loading. Reduces virulence and bacterial load in mouse model.[1]
#=GF CC SarA TF represses its transcription by binding to an essential 22 bp
#=GF CC region.[2] 
#=GF WK Staphylococcus_aureus
#=GF SQ 2

CP000253.1/1861587-1861438 AAUAAGUCAACGACCAUGCGUGGACAGUAAAAC---GAAGUACAUGCGAAUGUAGUAGCCGUUUACUAUGAGACUAGGCAUUAUAAUUGAAUAUCAUAGUAUAAAUUGCCAUGAGAGUAGAAGCUUCAGUUUAUGAAGACUUCGAAAUCAUGG
AP006716.1/2117568-2117429 AUUAAGUCAACGACCAUGCGUGGACUUUAAAAAACAAAAUCAUGUACAG---UAGUAGCCGUCUGCUAUGAGACUAGGCAUUAUAAUUGAAUAUCAUAGUGUUGAUAAAGAGAU-----AUGAUUAAUGAGUGAUUAG-UCAU----AUCUCU
#=GC SS_cons               ::::::<<-<<<______>>>>>:::::::::::::::::<<<<<<<<<--------<<<<<<<______>>>>-->>>------->>>-->>>---->>>:::::::<<<<<<-----<<<<<<<<<_____>>>>>->>>>---->>>>>>
#=GC RF                    AaUAAGuCAaCGACCAUGCGuGgACauUAAAAaAcAaAAucacauaCaaAUGUAGUAGCCGucuaCUAUGagaCUAGGCAUUAUAAuuGAAuauCAUAgugUaaAUaacgagguGAGUAguggcuucuGauUaagaagAccacGAAAaccucg
//
