# STOCKHOLM 1.0
#=GF ID Sr006
#=GF AC RF02889
#=GF DE Pseudomonas sRNA 6
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 100.0
#=GF NC 91.0
#=GF TC 106.9
#=GF SE Argasinska J
#=GF SS Predicted; Rscape;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF DR GO; 0046677; response to antibiotic;
#=GF DR GO; 0045975; positive regulation of translation, ncRNA-mediated;
#=GF DR GO; 0003676; nucleic acid binding;
#=GF RN [1]
#=GF RM 28976035
#=GF RT Probing the sRNA regulatory landscape of P. aeruginosa:
#=GF RT post-transcriptional control of determinants of pathogenicity and
#=GF RT antibiotic susceptibility.
#=GF RA Zhang YF, Han K, Chandler CE, Tjaden B, Ernst RK, Lory S
#=GF RL Mol Microbiol. 2017;106:919-937.
#=GF RN [2]
#=GF RM 23028334
#=GF RT The single-nucleotide resolution transcriptome of Pseudomonas aeruginosa
#=GF RT grown in body temperature.
#=GF RA Wurtzel O, Yoder-Himes DR, Han K, Dandekar AA, Edelheit S, Greenberg EP,
#=GF RA Sorek R, Lory S
#=GF RL PLoS Pathog. 2012;8:e1002945.
#=GF CC Positively regulates (post-transcriptionally), without Hfq, the expression
#=GF CC of PagL, an enzyme responsible for deacylation of lipid A. This reduces
#=GF CC the pro-inflammatory property of lipid A. [1] Furthermore, similarly to
#=GF CC Salmonella, Sr006 regulation of PagL expression was suggested to aid in
#=GF CC polymyxin B resistance.[1]
#=GF WK Pseudomonas_aeruginosa
#=GF SQ 3

AE004091.2/182693-182570           CGUCGCCGUAGCAACGCCGGG-CAUACCCUGCCCGGCGUCGGGGCGGAUGGCCCACCCGCCGUCCGCUCUCCUUCCCCCCGCACAGACUCUGCUACGGCGGCGCCCCCUUCCCCUUACGCCGCGC
#=GR AE004091.2/182693-182570   PP *********************.*******************************************************************************************************
HG322950.1/133070-132947           AGUCGCUGCAGCAACGGUGGGCUGUACAACUCCCAUCGUC-UGGCACCCGGCACACCCGCCGCUUGCCAACUCUCCCCCCGCGCAUACCUGGCUGCAGCGACUGACCCUUUCCUCCAGGGCGCAU
#=GR HG322950.1/133070-132947   PP **********************9*****************.************************************************************************************
CP004143.1/5593050-5593169         AGUCGCUGCAGCGACGGUGGG-CAUACCAGGCUCAUCGU-ACGGCCGUCGAUACACCAAUCGACGGC---CCUCUCCCCCGCGCAUACCUGGCUGCAGCGGCUGACUUUUUCUCCAGGGGCGGUC
#=GR CP004143.1/5593050-5593169 PP *********************.*****************.9**************************...9******************************************************
#=GC SS_cons                       ::<<<<<<______>>>>->>.:::::::(((((,,,,,,<<<<<<<<<<<<______>>>>>>>>>->>>,,,,,,,<<<<<<<________>>>->>>>,,,,,,,,,,,,,,,,)))-))::
#=GC RF                            aGuCgccGcAGCaACggcGGg.caUACcacccccauCGUCgggGCggucGGcaCACCcgCCgaccGCuccccuucCCCcCGCGcAuACcugGCUgCaGCGgCugaCccUUuCcccuagggCggac
//
