INFERNAL1/a [1.1.5 | Sep 2023] NAME BtsR1 ACC RF02888 DESC Bacillus sRNA 1 STATES 157 NODES 44 CLEN 51 W 67 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 02:14:03 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02888/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 2.803711 CKSUM 4005285749 NULL 0.000 0.000 0.000 0.000 GA 66.00 TC 76.30 NC 36.30 EFP7GF -8.8502 0.72359 ECMLC 0.60171 -8.95839 1.80123 1600000 777779 0.001543 ECMGC 0.39609 -19.43780 -3.21303 1600000 247187 0.001618 ECMLI 0.57327 -7.90530 2.71785 1600000 529658 0.002266 ECMGI 0.42199 -15.19199 -0.94312 1600000 163474 0.002447 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 67 86 -7.268 -7.475 -0.042 -5.889 IL 1 1 2 1 4 1 9 71 91 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 8 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 9 67 86 -8.264 -0.017 -6.918 -2.054 -1.954 -2.811 1.748 D 4 2 3 5 3 0 3 65 85 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 8 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 8 66 85 -8.264 -0.017 -6.918 -2.205 -3.511 1.832 -2.896 D 7 5 3 8 3 0 2 64 84 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 7 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - c - - - ML 9 8 3 11 3 1 8 65 84 -8.264 -0.017 -6.918 -1.071 0.978 -1.909 0.365 D 10 8 3 11 3 0 1 63 83 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 6 67 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 1 7 63 83 -8.264 -0.017 -6.918 0.364 -1.807 1.001 -1.230 D 13 11 3 14 3 0 1 62 82 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 5 66 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 6 62 82 -8.264 -0.017 -6.918 -2.054 -1.954 -2.811 1.748 D 16 14 3 17 3 0 0 61 81 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 5 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 6 61 81 -8.264 -0.017 -6.918 -2.054 -1.954 -2.811 1.748 D 19 17 3 20 3 0 0 60 80 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 4 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 5 60 80 -8.264 -0.017 -6.918 -2.054 -1.954 -2.811 1.748 D 22 20 3 23 3 0 0 59 79 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 3 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - C - - - ML 24 23 3 26 3 1 5 59 79 -8.264 -0.017 -6.918 -2.476 1.774 -3.304 -1.745 D 25 23 3 26 3 0 0 58 78 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 3 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 4 58 78 -8.264 -0.017 -6.918 1.822 -2.978 -2.551 -2.583 D 28 26 3 29 3 0 0 57 77 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 2 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - C - - - ML 30 29 3 32 3 1 4 57 77 -8.264 -0.017 -6.918 -2.476 1.774 -3.304 -1.745 D 31 29 3 32 3 0 0 56 75 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 2 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 33 32 3 35 3 1 3 56 76 -8.264 -0.017 -6.918 -2.054 -1.954 -2.811 1.748 D 34 32 3 35 3 0 0 55 74 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 1 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - C - - - ML 36 35 3 38 3 1 3 55 75 -8.264 -0.017 -6.918 -2.476 1.774 -3.304 -1.745 D 37 35 3 38 3 0 0 54 73 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 1 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - C - - - ML 39 38 3 41 5 1 2 54 73 -7.358 -0.032 -7.173 -7.385 -8.277 -2.476 1.774 -3.304 -1.745 D 40 38 3 41 5 0 0 53 72 -4.959 -0.803 -4.221 -2.596 -2.508 IL 41 41 3 41 5 1 1 54 74 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 14 51 U G - - MP 42 41 3 46 6 2 3 53 72 -9.238 -9.177 -0.019 -7.954 -8.234 -8.629 -4.701 -4.645 -4.265 -0.927 -2.856 -4.594 1.441 -3.678 -4.312 -0.835 -4.543 -2.631 0.516 -4.726 3.318 -3.155 ML 43 41 3 46 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 3 46 6 1 1 51 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 3 46 6 0 0 49 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 1 52 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 15 50 U G - - MP 48 47 6 52 6 2 3 51 70 -9.238 -9.177 -0.019 -7.954 -8.234 -8.629 -4.701 -4.645 -4.265 -0.927 -2.856 -4.594 1.441 -3.678 -4.312 -0.835 -4.543 -2.631 0.516 -4.726 3.318 -3.155 ML 49 47 6 52 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 47 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 50 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 16 49 u a - - MP 54 53 6 58 6 2 3 49 68 -9.238 -9.177 -0.019 -7.954 -8.234 -8.629 -4.005 -3.955 -3.848 -0.163 -2.712 -4.393 2.462 -3.446 -3.854 0.043 -4.229 -1.914 2.747 -4.131 -0.376 -2.708 ML 55 53 6 58 6 1 1 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 48 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 17 48 u a - - MP 60 59 6 64 4 2 2 47 66 -7.268 -7.475 -0.042 -5.889 -3.568 -3.632 -3.506 -0.100 1.365 -4.110 1.617 -3.276 -3.538 0.010 -3.954 -1.826 2.708 -3.758 -0.352 -2.490 ML 61 59 6 64 4 1 1 48 67 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 4 1 1 47 67 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 63 59 6 64 4 0 0 46 66 -4.568 -4.250 -2.265 -0.520 IL 64 64 5 64 4 1 1 49 69 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 65 65 6 65 3 1 1 48 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - A - - - ML 66 65 6 68 5 1 1 45 64 -7.358 -0.032 -7.173 -7.385 -8.277 1.084 -1.684 0.154 -1.131 D 67 65 6 68 5 0 0 43 63 -4.959 -0.803 -4.221 -2.596 -2.508 IL 68 68 3 68 5 1 1 45 64 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 19 47 C G - - MP 69 68 3 73 6 2 2 44 63 -9.238 -9.177 -0.019 -7.954 -8.234 -8.629 -4.189 -4.198 -3.957 -0.438 -2.726 -4.421 3.035 -3.500 -3.983 -0.266 -4.312 -2.232 0.854 -4.277 1.787 -2.838 ML 70 68 3 73 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 43 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 20 46 A U - - MP 75 74 6 79 6 2 2 42 61 -9.238 -9.177 -0.019 -7.954 -8.234 -8.629 -4.359 -3.258 -4.321 3.603 -4.964 -6.095 -0.625 -4.323 -4.206 0.463 -4.781 -0.654 -1.039 -5.176 -2.563 -3.133 ML 76 74 6 79 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 41 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 21 45 U G - - MP 81 80 6 85 6 2 2 40 59 -9.238 -9.177 -0.019 -7.954 -8.234 -8.629 -4.701 -4.645 -4.265 -0.927 -2.856 -4.594 1.441 -3.678 -4.312 -0.835 -4.543 -2.631 0.516 -4.726 3.318 -3.155 ML 82 80 6 85 6 1 1 38 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 38 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 39 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 22 44 g u - - MP 87 86 6 91 6 2 2 38 57 -9.238 -9.177 -0.019 -7.954 -8.234 -8.629 -3.787 -2.605 -3.943 2.310 -4.922 -5.531 -0.565 -4.061 -3.668 1.127 -4.224 2.738 -0.781 -4.573 -2.466 -2.676 ML 88 86 6 91 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 35 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 37 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 23 43 U A - - MP 93 92 6 97 4 2 2 36 55 -7.268 -7.475 -0.042 -5.889 -4.946 -4.783 -4.696 -1.032 -3.491 -5.188 0.846 -4.234 -4.695 -0.869 -5.030 -2.658 3.595 -5.062 -1.149 -3.428 ML 94 92 6 97 4 1 1 36 56 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 36 55 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 35 54 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 38 57 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - A - - - ML 99 98 6 101 3 1 1 33 52 -8.264 -0.017 -6.918 1.822 -2.978 -2.551 -2.583 D 100 98 6 101 3 0 0 32 51 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - U - - - ML 102 101 3 104 3 1 1 32 51 -8.264 -0.017 -6.918 -2.054 -1.954 -2.811 1.748 D 103 101 3 104 3 0 0 31 50 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - U - - - ML 105 104 3 107 3 1 1 31 50 -8.264 -0.017 -6.918 -2.054 -1.954 -2.811 1.748 D 106 104 3 107 3 0 0 30 49 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - G - - - ML 108 107 3 110 3 1 1 30 49 -8.264 -0.017 -6.918 -2.205 -3.511 1.832 -2.896 D 109 107 3 110 3 0 0 29 48 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 32 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - U - - - ML 111 110 3 113 3 1 1 29 48 -8.264 -0.017 -6.918 -2.054 -1.954 -2.811 1.748 D 112 110 3 113 3 0 0 28 47 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - A - - - ML 114 113 3 116 3 1 1 28 47 -8.264 -0.017 -6.918 1.822 -2.978 -2.551 -2.583 D 115 113 3 116 3 0 0 27 46 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - A - - - ML 117 116 3 119 3 1 1 27 45 -8.264 -0.017 -6.918 1.822 -2.978 -2.551 -2.583 D 118 116 3 119 3 0 0 26 45 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - A - - - ML 120 119 3 122 3 1 1 25 44 -8.264 -0.017 -6.918 1.822 -2.978 -2.551 -2.583 D 121 119 3 122 3 0 0 25 43 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - C - - - ML 123 122 3 125 3 1 1 24 43 -8.264 -0.017 -6.918 -2.476 1.774 -3.304 -1.745 D 124 122 3 125 3 0 0 23 42 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - C - - - ML 126 125 3 128 3 1 1 23 42 -8.264 -0.017 -6.918 -2.476 1.774 -3.304 -1.745 D 127 125 3 128 3 0 0 22 41 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - U - - - ML 129 128 3 131 3 1 1 22 41 -8.264 -0.017 -6.918 -2.054 -1.954 -2.811 1.748 D 130 128 3 131 3 0 0 21 40 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - U - - - ML 132 131 3 134 3 1 1 21 40 -8.264 -0.017 -6.918 -2.054 -1.954 -2.811 1.748 D 133 131 3 134 3 0 0 20 39 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - C - - - ML 135 134 3 137 3 1 1 20 38 -8.264 -0.017 -6.918 -2.476 1.774 -3.304 -1.745 D 136 134 3 137 3 0 0 19 38 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - A - - - ML 138 137 3 140 3 1 1 19 37 -8.264 -0.017 -6.918 1.822 -2.978 -2.551 -2.583 D 139 137 3 140 3 0 0 18 37 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - C - - - ML 141 140 3 143 3 1 1 17 36 -8.264 -0.017 -6.918 -2.476 1.774 -3.304 -1.745 D 142 140 3 143 3 0 0 17 36 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - A - - - ML 144 143 3 146 3 1 1 16 35 -8.264 -0.017 -6.918 1.822 -2.978 -2.551 -2.583 D 145 143 3 146 3 0 0 16 34 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - C - - - ML 147 146 3 149 3 1 1 15 33 -8.264 -0.017 -6.918 -2.476 1.774 -3.304 -1.745 D 148 146 3 149 3 0 0 15 33 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - U - - - ML 150 149 3 152 3 1 1 13 31 -8.264 -0.017 -6.918 -2.054 -1.954 -2.811 1.748 D 151 149 3 152 3 0 0 13 32 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - A - - - ML 153 152 3 155 2 1 1 1 1 * 0.000 1.822 -2.978 -2.551 -2.583 D 154 152 3 155 2 0 0 0 0 * 0.000 IL 155 155 3 155 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 156 155 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME BtsR1 ACC RF02888 DESC Bacillus sRNA 1 LENG 51 MAXL 131 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 02:14:03 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02888/CM NSEQ 3 EFFN 2.575195 CKSUM 4005285749 STATS LOCAL MSV -8.2055 0.72359 STATS LOCAL VITERBI -8.4791 0.72359 STATS LOCAL FORWARD -3.5104 0.72359 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.36848 1.43893 1.71597 1.11311 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.71360 2.66004 3.23499 0.19310 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.81261 3.70539 0.13039 3.28042 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.07831 0.73080 2.65276 1.13048 3 c - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 1.13468 2.58549 0.71264 2.18243 4 g - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.71360 2.66004 3.23499 0.19310 5 U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 2.71360 2.66004 3.23499 0.19310 6 U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.71360 2.66004 3.23499 0.19310 7 U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.97972 0.17641 3.55584 2.49666 8 C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 0.13759 3.34929 3.06270 3.06457 9 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.97972 0.17641 3.55584 2.49666 10 C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.71360 2.66004 3.23499 0.19310 11 U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.97972 0.17641 3.55584 2.49666 12 C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.97972 0.17641 3.55584 2.49666 13 C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 3.04446 1.63097 2.84632 0.35870 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 3.04267 1.63098 2.84546 0.35890 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.59546 1.02067 2.34705 0.75633 16 u - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.48800 1.02698 2.31063 0.77731 17 u - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 0.65009 2.50174 1.28939 2.11511 18 A - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.74790 0.65920 2.52754 1.08230 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.29913 2.90855 1.92928 2.83478 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 3.03970 1.63099 2.84403 0.35922 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 1.12744 2.86555 0.59719 2.67608 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 3.09384 1.99728 2.85856 0.27231 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 0.13759 3.34929 3.06270 3.06457 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.71360 2.66004 3.23499 0.19310 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.71360 2.66004 3.23499 0.19310 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.81261 3.70539 0.13039 3.28042 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 2.71360 2.66004 3.23499 0.19310 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 0.13759 3.34929 3.06270 3.06457 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 0.13759 3.34929 3.06270 3.06457 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 0.13759 3.34929 3.06270 3.06457 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.97972 0.17641 3.55584 2.49666 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.97972 0.17641 3.55584 2.49666 33 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.71360 2.66004 3.23499 0.19310 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.71360 2.66004 3.23499 0.19310 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.97972 0.17641 3.55584 2.49666 36 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 0.13759 3.34929 3.06270 3.06457 37 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97972 0.17641 3.55584 2.49666 38 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 0.13759 3.34929 3.06270 3.06457 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97972 0.17641 3.55584 2.49666 40 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 2.71360 2.66004 3.23499 0.19310 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 0.13759 3.34929 3.06270 3.06457 42 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.30899 3.04376 1.83399 2.84070 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.88322 1.81231 2.66000 0.34134 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.18412 3.02053 0.25308 2.77673 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 46 3.05116 2.23500 2.71537 0.24907 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 47 1.97323 2.68469 0.34106 2.50424 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 48 0.59311 2.47596 1.34640 2.27167 48 A - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 49 0.85535 2.51285 0.91825 2.35799 49 a - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 50 2.18479 3.02159 0.25282 2.77792 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 51 2.18369 3.01985 0.25325 2.77597 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * //