# STOCKHOLM 1.0
#=GF ID BtsR1
#=GF AC RF02888
#=GF DE Bacillus sRNA 1
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 66.0
#=GF NC 36.3
#=GF TC 76.3
#=GF SE Argasinska J
#=GF SS Predicted; Rscape;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF DR GO; 0040033; sRNA-mediated gene silencing;
#=GF DR GO; 0003676; nucleic acid binding;
#=GF RN [1]
#=GF RM 29069426
#=GF RT Small RNA-mediated Cry toxin silencing allows Bacillus thuringiensis to
#=GF RT evade Caenorhabditis elegans avoidance behavioral defenses.
#=GF RA Peng D, Luo X, Zhang N, Guo S, Zheng J, Chen L, Sun M
#=GF RL Nucleic Acids Res. 2018;46:159-173.
#=GF CC Allows avoidance of host behavioural defences by silencing the Cry toxin
#=GF CC when outside the host via direct base pairing to the RBS site of the
#=GF CC Cry5Ba toxin transcript and inhibiting its expression. The silencing
#=GF CC results in increased ingestion by C. elegans and is relieved inside the
#=GF CC host, resulting in host death.
#=GF WK Bacillus_thuringiensis
#=GF SQ 3

AAJM01000018.1/9079-9029           UGUGUUUCACUCCUUUUACAUGUAUUGUAAACCUUCACACUAAUGUGAAGG
#=GR AAJM01000018.1/9079-9029   PP ***************************************************
AE016877.1/5073644-5073594         UGCGUUUCACUCCUUCUACAUGUAUUGUAAACCUUCACACUAAUGUGAGGG
#=GR AE016877.1/5073644-5073594 PP ***************************************************
CM000745.1/4393294-4393244         UGCAUUUCACUCCUUUCGUAUAUAUUGUAAACCUUCACACUAAUGUGAAGG
#=GR CM000745.1/4393294-4393244 PP ***************************************************
#=GC SS_cons                       :::::::::::::<<<<-<<<<<___________________>>>>>>>>>
#=GC RF                            UGcGUUUCACUCCUUuuACAUgUAUUGUAAACCUUCACACUAAuGUGaaGG
//
