INFERNAL1/a [1.1.4 | Dec 2020] NAME SAM_VI ACC RF02885 DESC SAM-VI riboswitch STATES 195 NODES 46 CLEN 62 W 151 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 1 01:27:29 2021 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 /hps/nobackup/production/xfam/rfam/RELEASES/14.6/updates/GO_terms/RF02885/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 7 EFFN 1.828613 CKSUM 2062189920 NULL 0.000 0.000 0.000 0.000 GA 57.50 TC 57.50 NC 57.20 EFP7GF -9.0051 0.71931 ECMLC 0.63493 -5.65267 3.58092 1600000 421988 0.002844 ECMGC 0.41036 -16.45286 -2.62464 1600000 116537 0.003432 ECMLI 0.60187 -4.61909 4.58312 1600000 305168 0.003932 ECMGI 0.48225 -9.65117 1.14055 1600000 72822 0.005493 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 151 252 -6.826 -8.071 -0.083 -4.525 IL 1 1 2 1 4 1 15 152 253 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 16 152 254 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 95 - C - - MR 3 2 3 5 3 1 17 151 252 -8.318 -0.019 -6.636 -1.647 1.598 -2.468 -1.080 D 4 2 3 5 3 0 11 149 250 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 16 151 253 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 94 - A - - MR 6 5 3 8 5 1 17 150 251 -7.060 -0.040 -6.875 -7.087 -7.979 1.702 -2.293 -1.933 -1.828 D 7 5 3 8 5 0 10 148 249 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 14 150 251 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 93 C G - - MP 9 8 3 13 6 2 18 149 251 -9.092 -9.031 -0.021 -7.807 -8.087 -8.482 -4.475 -4.374 -4.177 -0.613 -2.912 -4.599 3.527 -3.714 -4.224 -0.362 -4.493 -2.320 0.610 -4.549 -0.616 -3.066 ML 10 8 3 13 6 1 12 147 248 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 12 146 248 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 7 142 243 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 13 148 250 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 14 148 249 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 92 G U - - MP 15 14 6 19 6 2 18 147 249 -9.092 -9.031 -0.021 -7.807 -8.087 -8.482 -3.568 -2.356 -3.731 1.163 -4.408 -5.132 -0.022 -3.761 -3.406 1.423 -3.924 3.031 -0.382 -4.350 -1.964 -2.441 ML 16 14 6 19 6 1 12 145 246 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 11 144 246 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 7 140 241 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 13 146 248 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 13 146 247 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 91 U A - - MP 21 20 6 25 6 2 17 145 247 -9.092 -9.031 -0.021 -7.807 -8.087 -8.482 -4.112 -3.935 -3.959 -0.235 -2.918 -4.530 1.409 -3.608 -3.964 0.030 -4.342 -1.836 3.289 -4.266 -0.596 -2.796 ML 22 20 6 25 6 1 11 143 244 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 11 142 244 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 7 138 239 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 12 144 246 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 13 144 246 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 90 A U - - MP 27 26 6 31 6 2 16 143 245 -9.092 -9.031 -0.021 -7.807 -8.087 -8.482 -3.730 -2.777 -3.753 3.290 -4.061 -5.117 0.235 -3.799 -3.647 1.145 -4.192 -0.263 -0.182 -4.315 -1.706 -2.590 ML 28 26 6 31 6 1 11 141 242 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 11 141 242 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 7 136 238 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 12 142 244 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 12 142 244 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 89 U A - - MP 33 32 6 37 6 2 15 141 243 -9.092 -9.031 -0.021 -7.807 -8.087 -8.482 -4.112 -3.935 -3.959 -0.235 -2.918 -4.530 1.409 -3.608 -3.964 0.030 -4.342 -1.836 3.289 -4.266 -0.596 -2.796 ML 34 32 6 37 6 1 10 139 240 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 10 139 240 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 6 135 236 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 12 140 242 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 12 140 242 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 88 C G - - MP 39 38 6 43 6 2 14 139 241 -9.092 -9.031 -0.021 -7.807 -8.087 -8.482 -4.475 -4.374 -4.177 -0.613 -2.912 -4.599 3.527 -3.714 -4.224 -0.362 -4.493 -2.320 0.610 -4.549 -0.616 -3.066 ML 40 38 6 43 6 1 10 137 239 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 9 137 238 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 6 133 235 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 11 138 240 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 11 138 240 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 87 A U - - MP 45 44 6 49 6 2 12 137 239 -9.092 -9.031 -0.021 -7.807 -8.087 -8.482 -3.730 -2.777 -3.753 3.290 -4.061 -5.117 0.235 -3.799 -3.647 1.145 -4.192 -0.263 -0.182 -4.315 -1.706 -2.590 ML 46 44 6 49 6 1 9 135 237 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 9 135 236 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 6 132 233 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 10 136 238 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 10 136 238 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 86 U A - - MP 51 50 6 55 6 2 10 135 237 -9.092 -9.031 -0.021 -7.807 -8.087 -8.482 -4.112 -3.935 -3.959 -0.235 -2.918 -4.530 1.409 -3.608 -3.964 0.030 -4.342 -1.836 3.289 -4.266 -0.596 -2.796 ML 52 50 6 55 6 1 8 134 235 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 8 133 235 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 5 131 233 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 9 134 236 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 9 134 236 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 85 u g - - MP 57 56 6 61 4 2 8 133 235 -6.906 -7.113 -0.055 -5.527 -4.013 -3.931 -3.733 -0.273 -2.515 -4.171 1.770 -3.281 -3.773 -0.067 -4.073 -1.934 0.932 -4.106 2.955 -2.648 ML 58 56 6 61 4 1 7 132 234 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 6 132 233 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 5 131 232 -4.568 -4.250 -2.265 -0.520 IL 61 61 5 61 4 1 7 133 235 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 7 133 234 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - G - - - ML 63 62 6 65 2 1 6 131 233 -8.310 -0.005 -1.498 -2.705 1.704 -2.091 D 64 62 6 65 2 0 5 130 232 -8.445 -0.004 IL 65 65 3 65 2 1 6 132 233 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 13 ] - - - - - - B 66 65 3 67 144 0 5 130 232 [ BEGL 14 ] - - - - - - S 67 66 1 68 4 0 0 114 215 -0.045 -6.812 -6.220 -6.860 [ MATP 15 ] 11 66 u g - - MP 68 67 1 72 6 2 2 114 216 -9.092 -9.031 -0.021 -7.807 -8.087 -8.482 -4.013 -3.931 -3.733 -0.273 -2.515 -4.171 1.770 -3.281 -3.773 -0.067 -4.073 -1.934 0.932 -4.106 2.955 -2.648 ML 69 67 1 72 6 1 1 112 213 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 70 67 1 72 6 1 1 111 213 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 71 67 1 72 6 0 0 107 208 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 72 72 5 72 6 1 1 113 215 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 73 73 6 73 5 1 1 113 214 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 65 G C - - MP 74 73 6 78 6 2 2 112 214 -9.092 -9.031 -0.021 -7.807 -8.087 -8.482 -4.670 -3.060 -4.762 0.248 -5.131 -4.665 -0.513 -5.000 -4.280 3.620 -4.623 -0.756 -0.901 -4.420 -2.547 -3.640 ML 75 73 6 78 6 1 1 110 211 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 76 73 6 78 6 1 1 109 211 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 77 73 6 78 6 0 0 105 206 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 78 78 5 78 6 1 1 111 213 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 79 79 6 79 5 1 1 111 213 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 64 C G - - MP 80 79 6 84 6 2 2 110 212 -9.092 -9.031 -0.021 -7.807 -8.087 -8.482 -4.475 -4.374 -4.177 -0.613 -2.912 -4.599 3.527 -3.714 -4.224 -0.362 -4.493 -2.320 0.610 -4.549 -0.616 -3.066 ML 81 79 6 84 6 1 1 108 209 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 82 79 6 84 6 1 1 108 209 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 83 79 6 84 6 0 0 103 204 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 84 84 5 84 6 1 1 109 211 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 85 85 6 85 5 1 1 109 211 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 63 C G - - MP 86 85 6 90 6 2 2 108 210 -9.092 -9.031 -0.021 -7.807 -8.087 -8.482 -4.475 -4.374 -4.177 -0.613 -2.912 -4.599 3.527 -3.714 -4.224 -0.362 -4.493 -2.320 0.610 -4.549 -0.616 -3.066 ML 87 85 6 90 6 1 1 106 207 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 88 85 6 90 6 1 1 106 207 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 89 85 6 90 6 0 0 101 202 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 90 90 5 90 6 1 1 107 209 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 91 91 6 91 5 1 1 107 209 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 62 u g - - MP 92 91 6 96 6 2 2 106 208 -9.092 -9.031 -0.021 -7.807 -8.087 -8.482 -3.178 -3.271 -3.141 0.156 0.338 -3.757 1.825 -2.973 -3.186 0.259 -3.611 -1.554 1.158 -3.381 2.398 -2.171 ML 93 91 6 96 6 1 1 104 205 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 94 91 6 96 6 1 1 104 205 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 95 91 6 96 6 0 0 99 201 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 96 96 5 96 6 1 1 105 207 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 97 97 6 97 5 1 1 105 207 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 61 C G - - MP 98 97 6 102 6 2 2 104 206 -9.092 -9.031 -0.123 -7.807 -8.087 -3.845 -3.902 -3.825 -3.705 -0.066 -2.544 -4.208 3.160 -3.292 -3.728 0.197 -4.073 -1.795 1.540 -4.004 -0.218 -2.580 ML 99 97 6 102 6 1 1 102 204 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 100 97 6 102 6 1 1 102 203 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 101 97 6 102 6 0 0 97 199 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 102 102 5 102 6 1 1 104 205 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 103 103 6 103 5 1 1 103 205 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 60 G C - - MP 104 103 6 108 6 2 2 103 204 -8.992 -8.931 -0.023 -7.708 -7.987 -8.383 -3.630 -2.543 -3.674 1.347 -3.961 -4.297 0.475 -3.915 -3.582 3.145 -4.014 -0.202 0.132 -3.706 -1.507 -2.576 ML 105 103 6 108 6 1 1 100 202 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 106 103 6 108 6 1 1 100 202 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 107 103 6 108 6 0 0 96 197 -10.132 -8.830 -4.627 -5.309 -5.327 -0.142 IL 108 108 5 108 6 1 1 102 203 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 109 109 6 109 5 1 1 102 203 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 59 c g - - MP 110 109 6 114 6 2 2 101 202 -8.992 -4.373 -0.092 -7.708 -7.987 -8.383 -3.481 -3.404 -3.353 0.259 -2.324 -3.901 2.913 -3.033 -3.381 0.562 -3.756 -1.432 1.299 -3.612 0.876 -2.267 ML 111 109 6 114 6 1 1 99 200 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 112 109 6 114 6 1 1 98 200 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 113 109 6 114 6 0 0 95 197 -10.132 -8.830 -4.627 -5.309 -5.327 -0.142 IL 114 114 5 114 6 1 1 100 201 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 115 115 6 115 5 1 1 100 201 -1.339 -0.872 -6.737 -4.904 -6.010 0.000 0.000 0.000 0.000 [ MATP 23 ] 19 55 c g - - MP 116 115 6 120 4 2 2 98 200 -2.857 -6.830 -0.410 -3.318 -3.024 -2.799 -3.046 1.343 -2.420 -3.775 2.359 -2.964 -3.070 1.280 -3.537 -0.752 1.609 -3.214 -0.121 -1.987 ML 117 115 6 120 4 1 1 97 199 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 118 115 6 120 4 1 1 97 198 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 119 115 6 120 4 0 0 95 196 -5.601 -5.282 -3.298 -0.231 IL 120 120 5 120 4 1 1 98 199 -2.219 -2.902 -0.672 -5.387 0.000 0.000 0.000 0.000 IR 121 121 6 121 3 1 1 98 199 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - u - - - ML 122 121 6 124 3 1 1 96 198 -7.985 -0.024 -6.302 -0.453 -0.133 -1.171 0.936 D 123 121 6 124 3 0 0 94 196 -6.766 -1.282 -0.787 IL 124 124 3 124 3 1 1 97 198 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 54 - g - - MR 125 124 3 127 5 1 1 95 197 -6.836 -0.135 -6.651 -3.927 -7.755 0.256 -1.277 0.819 -0.671 D 126 124 3 127 5 0 0 94 195 -6.119 -0.373 -3.745 -5.176 -3.171 IR 127 127 3 127 5 1 1 95 197 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 22 53 g c - - MP 128 127 3 132 6 2 2 95 196 -9.058 -8.998 -0.082 -7.774 -4.504 -8.449 -3.069 -2.320 -3.095 1.214 -3.293 -3.907 0.951 -3.394 -3.210 2.774 -3.661 -0.071 0.622 -3.184 -0.959 -0.143 ML 129 127 3 132 6 1 1 90 192 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 3 132 6 1 1 92 193 -7.321 -6.050 -1.959 -6.028 -0.614 -4.242 0.101 -0.777 0.583 -0.242 D 131 127 3 132 6 0 0 84 186 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 94 195 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 94 195 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 52 C G - - MP 134 133 6 138 4 2 2 93 194 -1.145 -6.851 -0.962 -5.265 -4.008 -3.857 -3.784 -0.147 -2.635 -4.265 3.339 -3.388 -3.821 0.191 -4.134 -1.799 0.926 -4.109 -0.334 -2.681 ML 135 133 6 138 4 1 1 83 185 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 4 1 1 90 191 -1.714 -4.701 -1.585 -1.629 -0.293 -1.254 1.092 -0.659 D 137 133 6 138 4 0 0 80 181 -4.568 -4.250 -2.265 -0.520 IL 138 138 5 138 4 1 1 95 196 -0.316 -3.604 -3.157 -8.635 0.000 0.000 0.000 0.000 IR 139 139 6 139 3 1 1 90 191 -0.262 -3.515 -3.667 0.000 0.000 0.000 0.000 [ MATL 28 ] 37 - c - - - ML 140 139 6 142 2 1 1 1 1 * 0.000 -0.152 0.209 0.020 -0.105 D 141 139 6 142 2 0 0 0 0 * 0.000 IL 142 142 3 142 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 29 ] - - - - - - E 143 142 3 -1 0 0 0 0 0 [ BEGR 30 ] - - - - - - S 144 66 1 145 3 0 0 34 55 -7.925 -0.021 -6.580 IL 145 145 2 145 3 1 1 36 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 67 - A - - - ML 146 145 2 148 3 1 1 34 55 -7.925 -0.021 -6.580 1.702 -2.293 -1.933 -1.828 D 147 145 2 148 3 0 0 32 54 -6.174 -1.687 -0.566 IL 148 148 3 148 3 1 1 35 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 68 - U - - - ML 149 148 3 151 3 1 1 33 54 -7.925 -0.021 -6.580 -1.414 -1.423 -2.144 1.597 D 150 148 3 151 3 0 0 31 53 -6.174 -1.687 -0.566 IL 151 151 3 151 3 1 1 34 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 69 - A - - - ML 152 151 3 154 3 1 1 32 53 -7.925 -0.021 -6.580 1.702 -2.293 -1.933 -1.828 D 153 151 3 154 3 0 0 30 52 -6.174 -1.687 -0.566 IL 154 154 3 154 3 1 1 33 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 70 - A - - - ML 155 154 3 157 3 1 1 31 52 -7.925 -0.021 -6.580 1.702 -2.293 -1.933 -1.828 D 156 154 3 157 3 0 0 29 51 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 1 32 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 71 - G - - - ML 158 157 3 160 3 1 1 30 51 -7.925 -0.021 -6.580 -1.498 -2.705 1.704 -2.091 D 159 157 3 160 3 0 0 28 50 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 31 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 72 - U - - - ML 161 160 3 163 5 1 1 29 50 -7.060 -0.040 -6.875 -7.087 -7.979 -1.414 -1.423 -2.144 1.597 D 162 160 3 163 5 0 0 27 49 -4.959 -0.803 -4.221 -2.596 -2.508 IL 163 163 3 163 5 1 1 29 50 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 73 84 C G - - MP 164 163 3 168 6 2 2 28 49 -9.092 -9.031 -0.021 -7.807 -8.087 -8.482 -4.475 -4.374 -4.177 -0.613 -2.912 -4.599 3.527 -3.714 -4.224 -0.362 -4.493 -2.320 0.610 -4.549 -0.616 -3.066 ML 165 163 3 168 6 1 1 26 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 3 168 6 1 1 26 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 3 168 6 0 0 24 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 1 27 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 27 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 74 83 C G - - MP 170 169 6 174 4 2 2 26 47 -6.906 -2.431 -0.350 -5.527 -4.475 -4.374 -4.177 -0.613 -2.912 -4.599 3.527 -3.714 -4.224 -0.362 -4.493 -2.320 0.610 -4.549 -0.616 -3.066 ML 171 169 6 174 4 1 1 24 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 4 1 1 24 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 173 169 6 174 4 0 0 23 45 -4.568 -4.250 -2.265 -0.520 IL 174 174 5 174 4 1 1 26 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 175 175 6 175 3 1 1 25 47 -1.236 -0.881 -4.946 0.000 0.000 0.000 0.000 [ MATL 39 ] 75 - g - - - ML 176 175 6 178 3 1 1 19 37 -7.925 -0.021 -6.580 -0.420 -1.100 0.764 0.122 D 177 175 6 178 3 0 0 18 37 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 76 - a - - - ML 179 178 3 181 3 1 1 18 36 -7.925 -0.021 -6.580 0.997 -1.366 0.057 -0.796 D 180 178 3 181 3 0 0 17 36 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 77 - A - - - ML 182 181 3 184 3 1 1 16 35 -7.925 -0.021 -6.580 1.702 -2.293 -1.933 -1.828 D 183 181 3 184 3 0 0 16 34 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 78 - A - - - ML 185 184 3 187 3 1 1 15 33 -7.925 -0.021 -6.580 1.702 -2.293 -1.933 -1.828 D 186 184 3 187 3 0 0 15 33 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 79 - G - - - ML 188 187 3 190 3 1 1 13 32 -7.925 -0.021 -6.580 -1.498 -2.705 1.704 -2.091 D 189 187 3 190 3 0 0 13 32 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 80 - A - - - ML 191 190 3 193 2 1 1 1 1 * 0.000 1.702 -2.293 -1.933 -1.828 D 192 190 3 193 2 0 0 0 0 * 0.000 IL 193 193 3 193 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 194 193 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME SAM_VI ACC RF02885 DESC SAM-VI riboswitch LENG 62 MAXL 238 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 1 01:27:29 2021 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 7 EFFN 2.819824 CKSUM 2062189920 STATS LOCAL MSV -8.3223 0.71931 STATS LOCAL VITERBI -8.8349 0.71931 STATS LOCAL FORWARD -3.4244 0.71931 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.40742 1.48842 1.19388 1.48521 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 0.00000 * 1 3.41126 0.19245 3.21762 2.28265 1 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 2 2.02150 3.11689 0.25893 2.96872 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 3 3.22362 2.09679 3.00182 0.23871 3 U - - ( 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 4 0.26238 3.04479 2.02815 2.96430 4 A - - ( 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 5 3.22330 2.09676 3.00166 0.23874 5 U - - ( 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 6 3.41830 0.19184 3.22120 2.28394 6 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 7 0.26253 3.04401 2.02797 2.96323 7 A - - ( 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 8 3.22131 2.09660 3.00071 0.23893 8 U - - ( 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 9 3.13000 1.68640 2.94965 0.33026 9 U - - ( 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 10 2.92127 3.82751 0.11536 3.40130 10 G - - , 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 11 3.14641 1.68648 2.95780 0.32865 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 12 2.73076 3.46424 0.13893 3.40396 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 13 3.42669 0.19111 3.22545 2.28547 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 14 3.42357 0.19138 3.22387 2.28490 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 15 2.86381 1.19973 2.71697 0.55234 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 16 2.84988 0.45564 2.61602 1.44812 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.26520 3.97289 1.54117 1.46634 0.26236 1.09861 0.40547 17 1.71519 2.56834 0.41785 2.46576 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.04790 3.75559 3.75559 1.46634 0.26236 2.59364 0.07769 18 2.54429 0.61973 2.29924 1.26214 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.04790 3.75559 3.75559 1.46634 0.26236 2.59364 0.07769 19 1.65775 1.01737 1.73021 1.30696 19 c - - < 1.38629 1.38629 1.38629 1.38629 0.31839 1.79238 2.24317 0.26046 1.47271 2.59364 0.07769 20 1.84566 1.48026 2.35796 0.65414 21 U - - - 1.38629 1.38629 1.38629 1.38629 0.05234 3.66923 3.66923 1.46634 0.26236 0.39655 1.11669 21 1.83071 2.22344 0.59595 1.71243 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.04116 3.90399 3.90399 1.46634 0.26236 1.87758 0.16601 22 2.96994 0.29859 2.73276 1.95341 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.90826 0.55058 3.90399 1.72434 0.19637 0.36517 1.18443 23 1.59047 1.15815 1.30796 1.55245 37 c - - _ 1.38629 1.38629 1.38629 1.38629 0.32704 1.34659 3.97289 2.46330 0.08900 1.09861 0.40547 24 2.19474 2.88387 0.26859 2.68479 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 25 2.27129 0.72920 1.88400 1.33733 53 c - - > 1.38629 1.38629 1.38629 1.38629 0.26520 3.97289 1.54117 1.46634 0.26236 1.09861 0.40547 26 1.23004 2.45957 0.70699 2.04700 54 g - - - 1.38629 1.38629 1.38629 1.38629 0.04790 3.75559 3.75559 1.46634 0.26236 2.59364 0.07769 27 1.50515 1.89232 0.90444 1.50270 55 g - - > 1.38629 1.38629 1.38629 1.38629 0.22750 1.71431 3.75559 1.13449 0.38800 2.59364 0.07769 28 1.83727 2.46102 0.42124 2.31092 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.04790 3.75559 3.75559 1.46634 0.26236 2.59364 0.07769 29 2.69562 0.48150 2.38691 1.50179 60 C - - > 1.38629 1.38629 1.38629 1.38629 0.04790 3.75559 3.75559 1.46634 0.26236 0.16192 1.90049 30 1.63490 2.77959 0.40162 2.60733 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 31 1.49064 2.87306 0.43554 2.64039 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 32 2.56253 3.38789 0.16539 3.18098 63 G - - > 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 33 2.56191 3.38699 0.16553 3.17993 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 34 3.57552 0.16742 3.29236 2.41928 65 C - - > 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 35 2.24719 3.12446 0.23158 2.86362 66 G - - > 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 36 0.12252 3.45758 3.16076 3.18420 67 A - - , 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 37 2.81668 2.74595 3.34160 0.17361 68 U - - , 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 38 0.12252 3.45758 3.16076 3.18420 69 A - - , 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 39 0.12252 3.45758 3.16076 3.18420 70 A - - , 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 40 2.92127 3.82751 0.11536 3.40130 71 G - - , 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 41 2.81668 2.74595 3.34160 0.17361 72 U - - , 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 42 3.43230 0.19063 3.22828 2.28649 73 C - - < 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 43 3.42847 0.19096 3.22635 2.28579 74 C - - < 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 44 1.84233 2.32878 0.73554 1.32844 75 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 45 0.61894 2.56077 1.30505 2.17963 76 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 46 0.12252 3.45758 3.16076 3.18420 77 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 47 0.12252 3.45758 3.16076 3.18420 78 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 48 2.92127 3.82751 0.11536 3.40130 79 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 49 0.12252 3.45758 3.16076 3.18420 80 A - - _ 1.38629 1.38629 1.38629 1.38629 0.26520 1.54117 3.97289 0.75496 0.63494 1.09861 0.40547 50 2.56368 3.38958 0.16512 3.18294 83 G - - > 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 51 2.56262 3.38802 0.16537 3.18113 84 G - - > 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 52 2.25047 3.12982 0.23042 2.86949 85 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 53 0.27090 3.18846 1.93321 2.96834 86 A - - ) 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 54 3.18486 2.34740 2.85338 0.21648 87 U - - ) 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 55 2.56282 3.38831 0.16532 3.18147 88 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 56 0.27060 3.19032 1.93347 2.97048 89 A - - ) 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 57 3.18930 2.34806 2.85520 0.21604 90 U - - ) 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 58 0.27024 3.19266 1.93380 2.97317 91 A - - ) 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 59 3.18232 2.08906 2.91532 0.24779 92 U - - ) 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 60 2.56942 3.39801 0.16379 3.19274 93 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 61 0.12252 3.45758 3.16076 3.18420 94 A - - : 1.38629 1.38629 1.38629 1.38629 0.03836 3.97289 3.97289 1.46634 0.26236 1.09861 0.40547 62 3.11053 0.15517 3.68482 2.60299 95 C - - : 1.38629 1.38629 1.38629 1.38629 0.01937 3.95389 * 1.46634 0.26236 0.00000 * //