# STOCKHOLM 1.0
#=GF ID BcKCsr2
#=GF AC RF02883
#=GF DE Burkholderia sRNA 2
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 40.0
#=GF NC 39.3
#=GF TC 40.5
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF DR SO; 0001182; iron_responsive_element;
#=GF RN [1]
#=GF RM 29099689
#=GF RT Identification of novel small RNAs in Burkholderia cenocepacia KC-01
#=GF RT expressed under iron limitation and oxidative stress conditions.
#=GF RA Ghosh S, Dureja C, Khatri I, Subramanian S, Raychaudhuri S, Ghosh S
#=GF RL Microbiology. 2017; [Epub ahead of print]
#=GF CC Upregulated in response to iron ion depletion. Predicted targets include
#=GF CC MerR family transcriptional regulator.
#=GF WK Burkholderia_cenocepacia
#=GF SQ 5

AM747720.1/2136330-2136461 AUGAAUGCCAGUUCGCCCCAUAUUUCUCGUAGCUGCGC------CGGUGC--------CCGUUG---------------CAAUGCUUCCC----------GGCACCUGACGC---GCAUCACGACG--GCAU-CAGCCGAGCCGCAUGUCCCUGUCGACGGGGCAGCGGCUUUUUUU
BX571965.1/1703315-1703186 AUGAAUGCCUGUCCGACCCAUUUUUCUCGUAGCUGCGC------CGGUGG--------UCCAAA---------------CGAUGCGCCCA----------CGCGCCUGACGCGCAGCACG---ACG--GUUA-AAGCCGAGCCGCUCGCCCCUGUU--CGGGGGAGCGGCUUUUUUU
CP000614.1/1950012-1950143 AUGAAUGCCAGUUCGCCCCAUAUUUCUCGUAGCUGCGC------CGGUGU--------CCGUUG---------------CGACGCUUUCC----------GGCAUCUGACGC---GCAUCACGACG--GUAU-CAGCCGAGCCGCAUGUCCCUGUCGACGGGGCAGCGGCUUUUUUU
CP001503.2/1547400-1547270 AUGAAUGCCCGUCAGCCCCAUCUUUUUCGCCGCUGCGC------AGGCGC--------ACCACA---------------UGAGGCGCUUA----------GGCCCGUGAGGC---GCAGU---ACGCAGCAGGAAGCCGAGCCGCUUGCCCCUGUUCG-GGGGCAGCGGCUUUUUUC
CP001043.1/1023491-1023327 AUGAGUGCCUGUUCACAUACUUUUUUCCGCAGUUGCGCUGCAGAUCGCGUAGUCGUCGUCGCUGACCACAAGGCAGUGACAACGGC----AAUGAAGCGAGCCACGAGGCGC--CAUGCG---AUG--ACCG-AAGUCGAGCCGCUUGCCCCGGUUGCCGGGGCGGCGGCUUUUUUA
#=GC SS_cons               ::::::<<<<<<<<<____________>>->>>>>->>......:<<<<<........-<<<<-...............---<<<<____..........>>>>--->>>>-...>>>>>...:<<..<<__.__>>>><<<<<<-<<<<<<_______>>>>>>>>>>>>::::::
#=GC RF                    AUGAAUGCCaGuucGccccaUuUUUuUCguagCuGCGC......cggcGc........uCgccg...............cgAcGccuuca..........ggCgccuggcGC...gCgcc...AcG..Gcau.aAgCCgaGCCGCuuGcCCCuGUugaCGGGgCaGCGGCuUUUUUu
//
