# STOCKHOLM 1.0
#=GF ID MH_s36
#=GF AC RF02882
#=GF DE Mesorhizobail RNA 36
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 46.0
#=GF NC 37.8
#=GF TC 46.6
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 28943874
#=GF RT A Genome-Wide Prediction and Identification of Intergenic Small RNAs by
#=GF RT Comparative Analysis in Mesorhizobium huakuii 7653R.
#=GF RA Fuli X, Wenlong Z, Xiao W, Jing Z, Baohai H, Zhengzheng Z, Bin-Guang M,
#=GF RA Youguo L
#=GF RL Front Microbiol. 2017;8:1730.
#=GF CC Existence predicted via genome wide comparisons with 4 related strains.
#=GF CC Analysed further by deep sequencing and Northern blot under various stress
#=GF CC conditions. Strong signals in response to variety of stimuli. Highly
#=GF CC abundant in symbiotic, micro-oxygen, oxidative and salt stress conditions.
#=GF WK Mesorhizobium
#=GF SQ 2

BA000012.4/3919175-3919086 GCGGAUGGUCUAGAGUCCAGG-AAAAGGCAGGGUUCAAC-CAUGUAUAAGGCCGUCGGAUCACGGGGAUCCCGGGUCAGCCGCGUUCUCUGG
AGSN01000066.1/17797-17888 GCGGAUGGAUUAGGUUUCUCGCAAAAGGCAAGGUUUCAACCAUGUACAAGGCCGUCGGAUCGCGCGGGUCCCGGGUCAGCCGCGUGCUCUGG
#=GC SS_cons               :<-<<<<<<<<---<<-<<-<---<<<<_____>>>>--->->>->>->>>>>>>>->::::<<<<<<-<-<<<_____>>>->->>>>>>:
#=GC RF                    GCGGauGGccuAGaguuCagGcAAggggCAaGGuuccAacCAuGUacAaggCCguCGGAUCaCgggGaUCCCGGGUCAGCCGCGUuCucuGG
//
