# STOCKHOLM 1.0
#=GF ID SrbA
#=GF AC RF02872
#=GF DE sRNA regulator of biofilms A
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 69.0
#=GF NC 62.7
#=GF TC 69.8
#=GF SE Argasinska J
#=GF SS Predicted; R-Scape;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 28771593
#=GF RT A novel small RNA is important for biofilm formation and pathogenicity in
#=GF RT Pseudomonas aeruginosa.
#=GF RA Taylor PK, Van Kessel ATM, Colavita A, Hancock REW, Mah TF
#=GF RL PLoS One. 2017;12:e0182582.
#=GF CC Important for biofilm formation and pathogenicity. Bacterial strain with
#=GF CC deleted SrbA had reduced biofilm mass. As the ability to form biofilms can
#=GF CC contribute to the ability a pathogen to thrive within the host, the C.
#=GF CC elegans hosts infected with the srbA deleted strain displayed
#=GF CC significantly lower mortality rate than the wild-type strain. However, the
#=GF CC deletion of srbA had no effect on growth or antibiotic resistance in P.
#=GF CC aeruginosa.
#=GF WK SrbA_sRNA
#=GF SQ 3

AE004091.2/2977373-2977611         AUCAGGGGCUCUGAAACGAC--GAGCUCCCGGUGCCUGCGCCGAUACGCCC-UCGGCCUCCACCGUGUUGAUCU-GCCCACAAGGCGGCUUGACGAGAUUGCGACUGGAACGAAGUUGUCCUGAGGGACGGGGAAGCGUUU-ACGUAUCAGCCAGAU---CGAAAGACUCGACAGCGAGUCGCCCACCGGCAACCACGAG
#=GR AE004091.2/2977373-2977611 PP ***********999855557..9***************************9.****************999888.*****************************************************************9.89*************...****************************************
HG322950.1/3570010-3570249         ACCAGGGGCCCUGAAU---A--GGGCCUCCGGAUCGAGCUCCGGCCCACUCGCCGAACUGAUCCGUGUUGUUACAGCCCACAAGGCGAAAUGACGAGGUUGCGACUGGCAAGAAGUUGUCCUGAGGGACGGGGAAGCAACC-ACGUAUCAGCAAGAUGGUCGAAUGCAGCCAUUCGCCCUCGCCCAACGGCAGCCACGAG
#=GR HG322950.1/3570010-3570249 PP ****************...*..**********************************************************************************************************************8.779999999987776666999999999999999*************************
CP002727.1/2488479-2488251         AUCAGGGGUUCUGGAA---ACGGAACCUCCGGGUCAGUCUCCG-CUUACCGCAGGGAUCGAUUCGUGUUGUUAC-GCCCACAAGGCAGCUCGACGAGAUGGCGACUGGAACGAGGUUGUCCUGAGGGACGGGGAAGCGUUUCACGUAUCGAGUUGCA---CGGU-GCCA-----A--GGGCGUCCACGGGCCUGCACGCA
#=GR CP002727.1/2488479-2488251 PP ************9998...667*************99999997.*******9999999****************.**********************************************************************************...**98.4433.....2..45588888888888888999888
#=GC SS_cons                       :(,,<<<<<<<<____...>..>>>>>>>,,,<<<<---<<<-<<<____>>>->>>->>>>)((-(((((,,,.<<<_____>>>,<<--<<<<-------------------------<<_________>>--->>>>-.>>,,,,,,,,)))))...)):::::::<<____>>:::<<<<<<<<<<<________>
#=GC RF                            AcCAGgGGcuCuGaAa...a..GagCCcCCGGgucgagCucCGgcccaCcggccGgaccgacgCGUguuguUac.GCCCACAAGGCgGcuugacGAGaUuGCGACUGGaAcGAaGUUGUCCuGAGGGACGGgGAAGCgucu.gCGUAUCagcacgau...CGaauGccacgAuuacgagucGcccgccGGcaacCACGag

AE004091.2/2977373-2977611         CCGAACGGCACUUGAUCCAGUCGAGAAGCA-CGGUCCGCGAACUGUUC
#=GR AE004091.2/2977373-2977611 PP **********************96511567.799**************
HG322950.1/3570010-3570249         CCGGCAAGCGAUCUCGAAUGCCACC--GCUGCGGUCAUCUACCUGUUC
#=GR HG322950.1/3570010-3570249 PP *********************9988..77625779*************
CP002727.1/2488479-2488251         CCACCGCUCGCCUACCCGGCAGCGA--GCA-CACGAUGCGCUUCGUCC
#=GR CP002727.1/2488479-2488251 PP 8888888888877665554444444..455.55556779*********
#=GC SS_cons                       >>>>>>>>>>:::::::<<<-<<__..___._>>->>>::::::::::
#=GC RF                            CCggcgggCgcuuacuccgguccaa..GCa.CgguccgCgaucuGUuC
//
