# STOCKHOLM 1.0
#=GF ID IR_84
#=GF AC RF02861
#=GF DE Neisseria sRNA 84
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 51.0
#=GF NC 50.2
#=GF TC 51.4
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 27486197
#=GF RT Comprehensive Identification of Meningococcal Genes and Small Noncoding
#=GF RT RNAs Required for Host Cell Colonization.
#=GF RA Capel E, Zomer AL, Nussbaumer T, Bole C, Izac B, Frapy E, Meyer J,
#=GF RA Bouzinba-Segard H, Bille E, Jamet A, Cavau A, Letourneur F, Bourdoulous S,
#=GF RA Rattei T, Nassif X, Coureuil M
#=GF RL MBio. 2016; [Epub ahead of print]
#=GF WK Neisseria_meningitidis
#=GF SQ 3

AE002098.2/2021833-2022018 CAACGUG-------CAAAAAAAACCAUUCAUACCAAGGGU-AAGUAUGAAUGGUCAAUACAUUGCGGGAAAACGUCUUACUUGCUGCACUGCCGAAAAGGGA-GAAACGGCAGCGGUA-AUCAGCGGAAAGGAUUGUACCCGAAUUAAUAUUAAGAAACGUUAAUCGCGAAAAUAUAUUAACAAACCUGU-UGAAAC
AE004969.1/2138417-2138232 CAACGCG-------CAAAAAAAACCAUUCAUACCAAGGGU-AAGUAUGAAUGGUCAAUACAUUGCGGGAAAACAUCUUACUUGCUGCACUGCCGAAAAGGGA-GAAACGGCAGCGUUA-ACCAGCAA-AAGCAUUGUACCUUUAUUAAUGUUAAAAAACAUUAAUUUUGAAAAUAUAUUAACGAAUAUAUCUGGAAC
GL635794.1/300572-300765   CUGUUUUUGCAGAUAAAA-AAAACCAUUCAUACUAAGGGAGAAGUAUGAAUGGCCAAUACAUUGCGGGAAAACGUCUUACUUGCUGCACCGCCCAAAAGGGAUGAAAGAGCGGUGUUGUGUCAGCAAUUGGUAUUCUACCGUUUUUAGUAUUAAAUGCUGUUAAGAA-GUGAAAUUAUUUCAAUAAGUUG-CAAGAU
#=GC SS_cons               :::((((.......,,,,,,,,<<<<<<<<<<<_______.__>>>>>>>>>>>,,,,,,,,,,<<<<---<<<<<<<--<<<<<<<-<<<<<<________.____>>>>>>->---.-->>>>>>-->>>>->>>->>>>,<<<<<<<<<____>>>>>>>>>))))::::::::<<<<<<____>>>.>>>:::
#=GC RF                    Caacgcg.......cAAAAAAAaCCauuCauaCcAAGGGu.AAGuauGaauGGuCAAUACAUUGcgGGAAAacgucuuACuuGCuGCACcGCcgAAAAGGGA.GAAAcgGCgGcGuUa.auCaGCaauaaggaUcguACCcguauuaacguuAAaaaacguuaaucgcgaaAAuaUAucgccaaAuaugg.cgaaAc
//
