# STOCKHOLM 1.0
#=GF ID Arrc11
#=GF AC RF02859
#=GF DE Actinobacillus sRNA 11
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 52.0
#=GF NC 48.5
#=GF TC 56.0
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 27402897
#=GF RT A computational strategy for the search of regulatory small RNAs in
#=GF RT Actinobacillus pleuropneumoniae.
#=GF RA Rossi CC, Bosse JT, Li Y, Witney AA, Gould KA, Langford PR, Bazzolli DM
#=GF RL RNA. 2016;22:1373-1385.
#=GF CC Arrc stands for Actinobacillus pleuropneumoniae Regulatory RNA Candidate.
#=GF CC TargetRNA2 was used for the predictions. radA gene target may be involved
#=GF CC in stress resistance. 
#=GF WK Actinobacillus_pleuropneumoniae
#=GF SQ 2

CP000569.1/208880-209050 AAAUUGUCCAAUAAAUAGGCUUCCCAAUUAUGUAAAAAGUGCGUAUCAUACGCACCUCAAAAUCAGCUGAAGCUG--ACAUAGAUUGAUUAAA-GAGUACGGUUUU-UUAGCCGUACUUUUUAUUUGGAUAGUUAUCUCGUUAAAUUUGUUUUAAAUUUAAUCACUUACGGAAGA
AE017143.1/354088-354260 AAUUUGUCGAAUAAAUAGGCUUCCAAAAAAUCAAAAAAGUGCGUAUUAUAUGCGCCUGAAUAUCAGCAUAUGCUGACAAUUAGAUGAUAUAAACAAGUACGGUUUUUUUAGCCGUACUUUUUAUUUGGAUGA-U-CCAUAAAAAAACUGCUUCAAUUUUAAUCACUUAUGUAAGA
#=GC SS_cons             :[-[[[[[[[[,,,,,,,,,,,,,(((((((((,,,,,<<<<<<<___>>>>>>>,,,,,,,,<<<<____>>>>,,))))-))))),,<<<<-<<<<<<<<<<_____>>>>>>>>>>>>>>,]]]]]]]]-]:::::<<<<<<<<<<___>>>>>>>>>>:::::::::::::
#=GC RF                  AaauuguCcaaUAAAUAGGCUUCCcaaucauguAAAAAGuGCguaUuAuacGCaCCUgAAaAUCaGCauAaGCuGAcacauAgauugaauaaacaaGuaCGGuuUUUUUagCCGuaCuuuuuaUuugGauaaUuAuCauauuaaauuuguUUcaaauuuaauCACUUAuGuAAGA
//
