# STOCKHOLM 1.0
#=GF ID Ysr100
#=GF AC RF02854
#=GF DE Yersinia sRNA 100
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 47.0
#=GF NC 40.8
#=GF TC 51.8
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF DR GO; 0005515; protein binding;
#=GF RN [1]
#=GF RM 25816203
#=GF RT Transcriptomic profiling of Yersinia pseudotuberculosis reveals
#=GF RT reprogramming of  the Crp regulon by temperature and uncovers Crp as a
#=GF RT master regulator of small RNAs.
#=GF RA Nuss AM, Heroven AK, Waldmann B, Reinkensmeier J, Jarek M, Beckstette M,
#=GF RA Dersch P
#=GF RL PLoS Genet. 2015;11:e1005087.
#=GF CC 5' located ORF: qor, 3' located ORF: pspG. Decreased expression in the crp
#=GF CC mutant (in the stationary phase), suggesting CRP regulon is a regulator of
#=GF CC the sRNA. CRP binding in a cAMP dependent manner was confirmed.
#=GF WK Yersinia_pseudotuberculosis
#=GF SQ 3

AL590842.1/324999-325118   UAUUCAUCCCUGUUAGAGAUAAAAAUAGCCGUAUAAACGGCACGUUCAUUUACGUGAACAUAGCUCUGACAGAAU-CCCU-GCUGUACCCCUACAUAUGCAUCAAAGAAAGUG-UAAUGACAG
ACCA01000024.1/23369-23249 UUUUCAUCCCUGUCAGAGGCAAAAAUAGCUGUAUAAACGGCACGUUCAUCUAAGUGAACAUGGCUCUGACAGAAU-ACCUAGCUGUACCCCUACAAGUGCAUCAAAGAAAGCG-UCAUGACAA
CP007448.1/474542-474663   UUUUCAUCCCUGUCAGAGGUAAAAAUAGCUGUAUAAACGGCACGUUCACUUAAGUGAACAUCACUCUGACAGAAUACCCU-GCUGUACCCCUACGAGUGUCUCAAAGAAAGCGGUGUAACCAG
#=GC SS_cons               :::::::::(((((((((,,,,,,,,,<<<<<____>>>>>,,<<<<<<____>>>>>>,,,,))))))))):::.::::.:<<<<-----<<<<<---<______>--->>>.>>--->>>>
#=GC RF                    UuUUCAUCCCuGucaGaGguAAAAAUAGCcGuAUAAaCgGCACGuuCacuUAaguGaaCAUagCuCugaCaGAAU.cCCU.GcuGuACCCCcaCgcgUGcaUCAAAgAAAgcG.ugaugaCag
//
