# STOCKHOLM 1.0
#=GF ID Ysr206
#=GF AC RF02852
#=GF DE Yersinia sRNA 206
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 124.0
#=GF NC 43.7
#=GF TC 315.5
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF DR GO; 0005515; protein binding;
#=GF RN [1]
#=GF RM 25816203
#=GF RT Transcriptomic profiling of Yersinia pseudotuberculosis reveals
#=GF RT reprogramming of  the Crp regulon by temperature and uncovers Crp as a
#=GF RT master regulator of small RNAs.
#=GF RA Nuss AM, Heroven AK, Waldmann B, Reinkensmeier J, Jarek M, Beckstette M,
#=GF RA Dersch P
#=GF RL PLoS Genet. 2015;11:e1005087.
#=GF CC 5' located ORF: rssB. Exclusively detected in the crp mutant, suggesting
#=GF CC CRP regulon is a regulator of the sRNA. CRP binding in a cAMP dependent
#=GF CC manner was confirmed.
#=GF WK Yersinia_pseudotuberculosis
#=GF SQ 2

AL590842.1/2443937-2444246 CUGUGAUGUGCGUCACAUAA-AAUAAUGAUAUUUACAGGAGCAACCCAUGAAAUUCAUCAAUAAAAUUAUCGCAAUGUUUGAAAAAAUGAACGUCUCAUUCGGCACUAUCAACGGUUAAUUAUUAUUUCUAAUCAUCCGUCAGUCUUCAUAAUAUUCUGAAUUAAAUUCGACAUGUAGGCAAUGAUACAGUAGCCAUUGU
CP007448.1/2213662-2213969 CUGUGAUGUGUAUCACAUAAAAAUAAAGAUAUUUACAGGAGCAACCCAUGAAACUGAUUAACAAAGUUAUCGCUAUGUUCGAAAAAAUGAGUGUCUCAUUUGGUACCAUCAACGGUUAAUUAUUUCA-UUAUUAAUCCGUAAAUCUUCACAAUAUUCUGGAUGAAAUUCAGUUGAUAGGUAAUGGUACUGAACCUCACGA
#=GC SS_cons               :::((((((((,,,,,,,,,,,,,,<<<<-<<<<-<<<<______>>->>>>>>>>>>,,,,,,,,,,,,,,,,<<<<<<________>>>>>>,,,,,,,,))))-))))<<<<---<<<<_______>>>>--->>>>[[[[------[[[[[[[-[[[[[[[((((-(((((((((-(((,,<<<<<<<<<<<___>
#=GC RF                    CUGuGauGugcaUCACAUAAAAAUAaugaUguuuACaGGAGCAACCCAuGaaacucauuAAuAAAaUUAUCGCaauguucGAAAAAAUgaacguCUCAUUuGgcaCuauCaaCGGUUAauuaUUauaUuuaauaAUCCGucaguCUUCAuaauauuCUGgauuaaauuCagcacauagGuaauGacaCuGuacCccauGg

AL590842.1/2443937-2444246 GAGUUA-UCUGUGAAAUGAAAGCAUAAUAUGCAAUUACCUAUGUGUGGAAUAUUUUAUUAUUAGGUGCCGUUUAACCUUUUUAUUUAACUUAAUUCCGAAUGUUUACGCUGA
CP007448.1/2213662-2213969 AAGGUCAGCAGUCACGUAACAGCAUAA-AUGUAAUUACUUGUUU-CCGAAUUUGUUAUUAUUAGUCAAUAUAUCGUAUUUUGAUUUGUA-UGAUCCUGAAUAUUUGCACUAA
#=GC SS_cons               >->>>>-->>>>>,,,,,,,,<<<<___>>>>,)))-)))))))))-)))),,,,,,,,,,,<<<<________>>>>,,,,,,,,,,,]]]]]]]-]]]]]]]---]]]]:
#=GC RF                    gAGguaAuCaGugAaaUaAaAgCauAAUauGcAauuACcuaugugcgGaauaUuUUAUUAUUaggcaauaUaUagccuUUUuAUUUaaauuaaucCuGaauauuUaCacugA
//
