INFERNAL1/a [1.1.4 | Dec 2020] NAME RefA9 ACC RF02844 DESC Enterococcus sRNA A9 STATES 201 NODES 54 CLEN 64 W 88 ALPH RNA RF no CONS yes MAP yes DATE Tue Jan 16 11:30:30 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 2.996094 CKSUM 527151334 NULL 0.000 0.000 0.000 0.000 GA 49.00 TC 49.60 NC 46.50 EFP7GF -7.4553 0.72450 ECMLC 0.52507 -9.92065 2.21037 1600000 700642 0.001713 ECMGC 0.44985 -13.03583 -0.05952 1600000 137151 0.002916 ECMLI 0.47593 -8.95298 3.69162 1600000 492889 0.002435 ECMGI 0.45339 -9.57864 2.48147 1600000 94783 0.004220 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 88 119 -7.330 -7.537 -0.041 -5.951 IL 1 1 2 1 4 1 17 91 122 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 91 121 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 16 89 119 -8.322 -0.016 -6.976 0.062 -2.017 1.228 -1.450 D 4 2 3 5 3 0 13 87 117 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 16 90 120 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 15 88 118 -8.322 -0.016 -6.976 -1.230 1.148 -2.085 0.165 D 7 5 3 8 3 0 12 86 116 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 15 89 119 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 14 87 117 -8.322 -0.016 -6.976 0.062 -2.017 1.228 -1.450 D 10 8 3 11 3 0 12 85 115 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 14 88 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 13 86 116 -8.322 -0.016 -6.976 1.837 -3.095 -2.657 -2.712 D 13 11 3 14 3 0 11 84 115 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 13 87 117 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 2 1 12 85 115 -8.777 -0.003 1.837 -3.095 -2.657 -2.712 D 16 14 3 17 2 0 11 84 114 -8.445 -0.004 IL 17 17 3 17 2 1 12 85 116 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 6 ] - - - - - - B 18 17 3 19 66 0 11 84 114 [ BEGL 7 ] - - - - - - S 19 18 1 20 4 0 0 29 47 -0.039 -7.039 -6.446 -7.086 [ MATP 8 ] 6 20 A U - - MP 20 19 1 24 6 2 2 29 47 -9.265 -9.205 -0.019 -7.981 -8.261 -8.656 -3.810 -2.723 -3.928 3.110 -4.810 -5.548 -0.522 -4.083 -3.728 1.104 -4.312 1.585 -0.730 -4.531 -2.405 -2.706 ML 21 19 1 24 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 22 19 1 24 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 23 19 1 24 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 24 24 5 24 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 25 25 6 25 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 19 c g - - MP 26 25 6 30 6 2 2 27 45 -9.265 -9.205 -0.143 -7.981 -3.564 -8.656 -2.263 -2.250 -2.439 0.847 -2.193 -3.211 1.908 -0.017 -2.447 0.954 -2.966 0.617 1.270 -2.567 0.873 -1.568 ML 27 25 6 30 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 28 25 6 30 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 29 25 6 30 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 30 30 5 30 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 31 31 6 31 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 18 g c - - MP 32 31 6 36 6 2 2 25 43 -9.143 -9.082 -0.021 -7.859 -8.139 -8.534 -3.042 -2.461 -3.100 1.066 -3.063 -3.898 1.188 -3.311 -3.176 2.281 -3.648 0.954 1.582 -3.190 -0.758 -2.082 ML 33 31 6 36 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 34 31 6 36 6 1 1 24 43 -8.022 -6.751 -0.578 -6.729 -1.863 -4.942 -0.569 -1.595 1.316 -0.986 D 35 31 6 36 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 36 36 5 36 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 37 37 6 37 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 17 A U - - MP 38 37 6 42 4 2 2 23 41 -7.330 -7.537 -0.041 -5.951 -4.474 -3.351 -4.420 3.641 -5.132 -6.281 -0.785 -4.414 -4.310 0.337 -4.890 -0.733 -1.197 -5.336 -2.722 -3.232 ML 39 37 6 42 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 40 37 6 42 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 41 37 6 42 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 42 42 5 42 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 43 43 6 43 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - u - - - ML 44 43 6 46 3 1 1 20 38 -8.322 -0.016 -6.976 -1.015 0.579 -1.828 0.791 D 45 43 6 46 3 0 0 19 38 -6.174 -1.687 -0.566 IL 46 46 3 46 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 11 - A - - - ML 47 46 3 49 3 1 1 19 37 -8.322 -0.016 -6.976 1.224 -1.788 -0.065 -1.258 D 48 46 3 49 3 0 0 18 37 -6.174 -1.687 -0.566 IL 49 49 3 49 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 12 - U - - - ML 50 49 3 52 3 1 1 17 36 -8.322 -0.016 -6.976 0.013 -1.091 -1.458 1.109 D 51 49 3 52 3 0 0 17 36 -6.174 -1.687 -0.566 IL 52 52 3 52 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 13 - U - - - ML 53 52 3 55 3 1 1 16 34 -8.322 -0.016 -6.976 -0.047 -1.106 -1.489 1.145 D 54 52 3 55 3 0 0 16 34 -6.174 -1.687 -0.566 IL 55 55 3 55 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 14 - A - - - ML 56 55 3 58 3 1 1 15 33 -8.322 -0.016 -6.976 1.837 -3.095 -2.657 -2.712 D 57 55 3 58 3 0 0 15 33 -6.174 -1.687 -0.566 IL 58 58 3 58 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 15 - A - - - ML 59 58 3 61 3 1 1 13 31 -8.322 -0.016 -6.976 1.837 -3.095 -2.657 -2.712 D 60 58 3 61 3 0 0 13 32 -6.174 -1.687 -0.566 IL 61 61 3 61 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 16 - u - - - ML 62 61 3 64 2 1 1 1 1 * 0.000 0.558 -1.028 -1.252 0.693 D 63 61 3 64 2 0 0 0 0 * 0.000 IL 64 64 3 64 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 19 ] - - - - - - E 65 64 3 -1 0 0 0 0 0 [ BEGR 20 ] - - - - - - S 66 18 1 67 3 0 1 69 99 -8.322 -0.016 -6.976 IL 67 67 2 67 3 1 1 71 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - A - - - ML 68 67 2 70 3 1 2 69 99 -8.322 -0.016 -6.976 1.837 -3.095 -2.657 -2.712 D 69 67 2 70 3 0 0 67 97 -6.174 -1.687 -0.566 IL 70 70 3 70 3 1 1 70 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - C - - - ML 71 70 3 73 3 1 2 68 98 -8.322 -0.016 -6.976 -2.616 1.795 -3.441 -1.860 D 72 70 3 73 3 0 0 65 96 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 1 69 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - A - - - ML 74 73 3 76 3 1 1 67 97 -8.322 -0.016 -6.976 1.235 -0.451 -1.454 -0.866 D 75 73 3 76 3 0 0 64 95 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 1 68 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - A - - - ML 77 76 3 79 3 1 1 66 96 -2.512 -0.292 -6.976 1.345 -1.862 -0.333 -1.356 D 78 76 3 79 3 0 0 60 91 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 67 98 -0.865 -1.222 -5.485 0.000 0.000 0.000 0.000 [ MATL 25 ] 28 - A - - - ML 80 79 3 82 3 1 1 55 74 -8.322 -0.016 -6.976 1.837 -3.095 -2.657 -2.712 D 81 79 3 82 3 0 0 53 73 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 29 - u - - - ML 83 82 3 85 3 1 1 54 73 -8.322 -0.016 -6.976 0.086 -0.034 -1.226 0.617 D 84 82 3 85 3 0 0 52 72 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 56 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 30 - A - - - ML 86 85 3 88 3 1 1 53 72 -8.322 -0.016 -6.976 1.291 -1.825 -0.208 -1.307 D 87 85 3 88 3 0 0 51 71 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 55 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 31 - a - - - ML 89 88 3 91 3 1 1 51 70 -8.322 -0.016 -6.976 0.681 -0.321 -0.209 -0.451 D 90 88 3 91 3 0 0 50 70 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 54 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 32 - C - - - ML 92 91 3 94 3 1 1 50 69 -8.322 -0.016 -6.976 -0.099 1.073 -1.726 -0.598 D 93 91 3 94 3 0 0 49 68 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 33 - A - - - ML 95 94 3 97 3 1 1 49 68 -8.322 -0.016 -6.976 1.837 -3.095 -2.657 -2.712 D 96 94 3 97 3 0 0 48 67 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 34 - C - - - ML 98 97 3 100 3 1 1 48 67 -8.322 -0.016 -6.976 -1.230 1.148 -2.085 0.165 D 99 97 3 100 3 0 0 47 66 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 35 - A - - - ML 101 100 3 103 3 1 1 47 66 -2.705 -0.254 -6.976 1.837 -3.095 -2.657 -2.712 D 102 100 3 103 3 0 0 45 64 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 47 66 -1.975 -0.501 -4.675 0.000 0.000 0.000 0.000 [ MATL 33 ] 37 - A - - - ML 104 103 3 106 5 1 1 46 64 -7.410 -0.031 -7.226 -7.438 -8.329 1.837 -3.095 -2.657 -2.712 D 105 103 3 106 5 0 0 44 63 -4.959 -0.803 -4.221 -2.596 -2.508 IL 106 106 3 106 5 1 1 46 65 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 38 68 A U - - MP 107 106 3 111 6 2 2 45 63 -9.265 -9.205 -0.019 -7.981 -8.261 -8.656 -4.474 -3.351 -4.420 3.641 -5.132 -6.281 -0.785 -4.414 -4.310 0.337 -4.890 -0.733 -1.197 -5.336 -2.722 -3.232 ML 108 106 3 111 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 109 106 3 111 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 110 106 3 111 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 111 111 5 111 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 112 112 6 112 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 39 67 a u - - MP 113 112 6 117 6 2 2 43 61 -9.265 -9.205 -0.019 -7.981 -8.261 -8.656 -3.771 -2.689 -3.819 2.809 -4.462 -4.939 -0.038 -4.064 -3.760 2.413 -4.263 -0.217 -0.321 -4.115 -1.982 -2.664 ML 114 112 6 117 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 115 112 6 117 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 116 112 6 117 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 117 117 5 117 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 118 118 6 118 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 40 66 a u - - MP 119 118 6 123 6 2 2 41 59 -9.265 -9.205 -0.019 -7.981 -8.261 -8.656 -3.771 -2.689 -3.819 2.809 -4.462 -4.939 -0.038 -4.064 -3.760 2.413 -4.263 -0.217 -0.321 -4.115 -1.982 -2.664 ML 120 118 6 123 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 121 118 6 123 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 122 118 6 123 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 123 123 5 123 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 124 124 6 124 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 41 65 G C - - MP 125 124 6 129 6 2 2 39 57 -9.265 -9.205 -0.019 -7.981 -8.261 -8.656 -4.240 -2.861 -4.236 1.505 -5.011 -4.715 -0.337 -4.633 -4.157 3.349 -4.531 -0.482 -0.627 -4.154 -2.338 -3.126 ML 126 124 6 129 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 6 129 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 6 129 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 42 64 C G - - MP 131 130 6 135 6 2 2 37 55 -9.265 -9.205 -0.019 -7.981 -8.261 -8.656 -5.345 -5.318 -4.894 -1.497 -3.461 -5.200 3.737 -4.350 -4.981 -1.345 -5.145 -3.287 -0.042 -5.358 -1.198 -3.798 ML 132 130 6 135 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 6 135 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 43 63 c g - - MP 137 136 6 141 6 2 2 35 53 -9.265 -9.205 -0.019 -7.981 -8.261 -8.656 -3.282 -2.858 -3.325 1.403 -2.915 -4.120 2.321 -3.344 -3.361 1.957 -3.845 -0.687 1.053 -3.447 -0.559 -2.239 ML 138 136 6 141 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 6 141 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 44 62 g c - - MP 143 142 6 147 6 2 2 33 51 -9.265 -9.205 -0.019 -7.981 -8.261 -8.656 -3.253 -2.644 -3.282 1.944 -3.189 -4.067 1.726 -3.469 -3.381 2.245 -3.841 -0.440 0.770 -3.363 -0.838 -2.244 ML 144 142 6 147 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 45 61 c g - - MP 149 148 6 153 6 2 2 31 49 -9.265 -9.205 -0.019 -7.981 -8.261 -8.656 -3.324 -3.200 -3.363 1.467 -2.637 -4.125 2.526 -3.216 -3.354 0.788 -3.845 -1.152 1.766 -3.541 -0.314 -2.263 ML 150 148 6 153 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 46 60 c g - - MP 155 154 6 159 6 2 2 29 47 -9.265 -9.205 -0.019 -7.981 -8.261 -8.656 -4.075 -4.021 -3.913 -0.203 -2.757 -4.457 2.748 -3.495 -3.914 -0.003 -4.288 -1.962 2.490 -4.197 -0.412 -2.760 ML 156 154 6 159 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 158 154 6 159 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 159 159 5 159 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 160 160 6 160 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 47 59 C G - - MP 161 160 6 165 6 2 2 27 45 -9.265 -9.205 -0.019 -7.981 -8.261 -8.656 -4.221 -4.172 -4.010 -0.332 -2.783 -4.508 3.125 -3.544 -4.016 -0.133 -4.364 -2.108 1.947 -4.317 -0.436 -2.849 ML 162 160 6 165 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 163 160 6 165 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 164 160 6 165 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 165 165 5 165 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 166 166 6 166 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 48 58 U A - - MP 167 166 6 171 6 2 2 25 43 -9.265 -9.205 -0.019 -7.981 -8.261 -8.656 -5.107 -4.945 -4.838 -1.188 -3.605 -5.315 0.732 -4.357 -4.836 -1.040 -5.163 -2.817 3.635 -5.214 -1.260 -3.545 ML 168 166 6 171 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 169 166 6 171 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 170 166 6 171 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 171 171 5 171 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 172 172 6 172 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 49 57 A U - - MP 173 172 6 177 4 2 2 23 41 -7.330 -7.537 -0.041 -5.951 -4.474 -3.351 -4.420 3.641 -5.132 -6.281 -0.785 -4.414 -4.310 0.337 -4.890 -0.733 -1.197 -5.336 -2.722 -3.232 ML 174 172 6 177 4 1 1 24 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 175 172 6 177 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 176 172 6 177 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 177 177 5 177 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 178 178 6 178 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 50 - C - - - ML 179 178 6 181 3 1 1 20 38 -8.322 -0.016 -6.976 -0.022 1.023 -1.680 -0.576 D 180 178 6 181 3 0 0 19 38 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 51 - g - - - ML 182 181 3 184 3 1 1 18 37 -8.322 -0.016 -6.976 0.193 -1.057 0.358 0.131 D 183 181 3 184 3 0 0 18 37 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 52 - G - - - ML 185 184 3 187 3 1 1 17 36 -8.322 -0.016 -6.976 -2.320 -3.640 1.847 -3.023 D 186 184 3 187 3 0 0 17 35 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 53 - C - - - ML 188 187 3 190 3 1 1 16 35 -8.322 -0.273 -2.562 -2.616 1.795 -3.441 -1.860 D 189 187 3 190 3 0 0 16 34 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 54 - G - - - ML 191 190 3 193 3 1 1 15 33 -8.068 -0.019 -6.722 -1.801 -3.054 1.769 -2.442 D 192 190 3 193 3 0 0 14 32 -7.716 -3.229 -0.170 IL 193 193 3 193 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 55 - A - - - ML 194 193 3 196 3 1 1 13 31 -8.068 -0.019 -6.722 1.761 -2.582 -2.193 -2.145 D 195 193 3 196 3 0 0 12 31 -7.716 -0.390 -2.108 IL 196 196 3 196 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 56 - A - - - ML 197 196 3 199 2 1 1 1 1 * 0.000 1.837 -3.095 -2.657 -2.712 D 198 196 3 199 2 0 0 0 0 * 0.000 IL 199 199 3 199 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 53 ] - - - - - - E 200 199 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME RefA9 ACC RF02844 DESC Enterococcus sRNA A9 LENG 64 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jan 16 11:30:30 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 4 EFFN 3.410156 CKSUM 527151334 STATS LOCAL MSV -8.3042 0.72450 STATS LOCAL VITERBI -9.0653 0.72450 STATS LOCAL FORWARD -3.0083 0.72450 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.01532 1.58305 1.56390 1.50037 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 0.00000 * 1 1.35422 2.87944 0.50574 2.49347 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 2 2.33128 0.55670 2.93567 1.28505 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 3 1.35422 2.87944 0.50574 2.49347 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 4 0.09545 3.69312 3.37540 3.44400 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 5 0.09545 3.69312 3.37540 3.44400 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 6 0.54108 3.14970 1.13459 2.92887 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 7 1.93198 1.12940 1.44892 1.21372 7 c - - < 1.38629 1.38629 1.38629 1.38629 0.23882 4.12713 1.62804 1.46634 0.26236 1.09861 0.40547 8 1.86556 1.86883 0.81322 1.39651 8 g - - < 1.38629 1.38629 1.38629 1.38629 0.04014 3.92846 3.92846 1.46634 0.26236 0.15214 1.95808 9 0.19735 3.34895 2.25114 3.25195 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 10 2.16847 0.95840 2.74041 0.82645 10 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 11 0.51337 2.71982 1.42181 2.36061 11 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 12 1.38579 2.20290 2.45984 0.59069 12 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 13 1.43011 2.21525 2.48441 0.56525 13 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 14 0.09545 3.69312 3.37540 3.44400 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 15 0.09545 3.69312 3.37540 3.44400 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 16 0.98675 2.14718 2.30174 0.89083 16 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 17 3.29789 2.56676 3.07723 0.17415 17 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 18 1.57740 1.19269 1.46935 1.34703 18 c - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 19 1.69212 1.93560 0.98285 1.21304 19 g - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 20 3.11367 2.03227 2.92628 0.26016 20 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 21 0.09545 3.69312 3.37540 3.44400 21 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 22 3.39093 0.11830 3.95412 2.83495 22 C - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 23 0.50162 1.69880 2.46976 2.06400 23 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 24 0.42962 2.77240 1.61528 2.43160 24 A - - - 1.38629 1.38629 1.38629 1.38629 0.23882 1.62804 4.12713 1.12101 0.39445 1.09861 0.40547 25 0.09545 3.69312 3.37540 3.44400 28 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 26 1.32939 1.40062 2.27414 0.95184 29 u - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 27 0.46673 2.74572 1.52473 2.39614 30 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 28 0.90150 1.60304 1.52790 1.73861 31 a - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 29 1.47476 0.60215 2.67524 1.86663 32 C - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 30 0.09545 3.69312 3.37540 3.44400 33 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 31 2.33128 0.55670 2.93567 1.28505 34 C - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 32 0.09545 3.69312 3.37540 3.44400 35 A - - - 1.38629 1.38629 1.38629 1.38629 0.21000 1.75282 4.12713 0.17677 1.81999 1.09861 0.40547 33 0.09545 3.69312 3.37540 3.44400 37 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 34 0.19631 3.35664 2.25300 3.26215 38 A - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 35 0.73648 2.78105 0.94846 2.63257 39 a - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 36 0.73659 2.78039 0.94859 2.63172 40 a - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 37 1.63725 2.95130 0.36604 2.81773 41 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 38 3.67107 0.14926 3.50100 2.48847 42 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 39 1.66820 1.08957 1.23921 1.68502 43 c - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 40 1.30494 1.50461 1.04315 1.86844 44 g - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 41 1.63158 0.95270 1.97570 1.27291 45 c - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 42 2.77139 0.81753 2.53938 0.87469 46 c - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 43 2.86046 0.55506 2.63169 1.21482 47 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 44 3.51756 2.33349 3.32843 0.17731 48 U - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 45 0.19739 3.34866 2.25107 3.25157 49 A - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 46 1.41723 0.63706 2.63962 1.84909 50 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 47 1.25753 2.15754 1.11757 1.29843 51 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 48 3.15121 4.08303 0.08951 3.65097 52 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 49 3.39093 0.11830 3.95412 2.83495 53 C - - _ 1.38629 1.38629 1.38629 1.38629 0.22454 4.12713 1.68747 1.46634 0.26236 1.09861 0.40547 50 2.78577 3.67509 0.13444 3.25029 54 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03958 3.94218 3.94218 1.46634 0.26236 2.60040 0.07714 51 0.14157 3.32283 3.03878 3.03535 55 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03958 3.94218 3.94218 1.46634 0.26236 0.16074 1.90726 52 0.09545 3.69312 3.37540 3.44400 56 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 53 3.46543 2.59702 3.15508 0.16063 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 54 0.20116 3.51941 2.16914 3.26155 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 55 1.35192 2.79791 0.49834 2.62031 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 56 0.97253 2.70737 0.74274 2.53382 60 g - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 57 1.44263 2.14633 0.85669 1.50410 61 g - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 58 2.10422 1.14962 1.38533 1.16777 62 c - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 59 1.91639 1.34930 0.99410 1.49887 63 g - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 60 2.76774 3.66477 0.12850 3.43670 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 61 3.04950 0.41743 2.76545 1.46562 65 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 62 2.85695 1.06996 2.58455 0.64607 66 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 63 2.85555 1.07009 2.58397 0.64621 67 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 64 3.45988 2.59608 3.15261 0.16104 68 U - - > 1.38629 1.38629 1.38629 1.38629 0.01653 4.11087 * 1.46634 0.26236 0.00000 * //