INFERNAL1/a [1.1.5 | Sep 2023] NAME RefA9 ACC RF02844 DESC Enterococcus sRNA A9 STATES 201 NODES 54 CLEN 64 W 88 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 09:50:03 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02844/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 3.003906 CKSUM 527151334 NULL 0.000 0.000 0.000 0.000 GA 49.00 TC 50.50 NC 47.40 EFP7GF -7.4363 0.72454 ECMLC 0.52268 -9.92714 2.24825 1600000 696526 0.001723 ECMGC 0.43754 -13.41306 -0.06429 1600000 137595 0.002907 ECMLI 0.47735 -8.84967 3.74796 1600000 490690 0.002446 ECMGI 0.44912 -9.65441 2.52659 1600000 95048 0.004208 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 88 118 -7.332 -7.539 -0.041 -5.953 IL 1 1 2 1 4 1 17 91 121 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 90 120 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 16 88 118 -8.324 -0.016 -6.978 0.109 -1.995 1.201 -1.426 D 4 2 3 5 3 0 13 86 116 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 16 89 119 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 15 87 117 -8.324 -0.016 -6.978 -1.211 1.123 -2.065 0.204 D 7 5 3 8 3 0 12 85 115 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 15 88 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 14 86 116 -8.324 -0.016 -6.978 0.109 -1.995 1.201 -1.426 D 10 8 3 11 3 0 12 84 114 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 14 87 117 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 13 85 115 -8.324 -0.016 -6.978 1.837 -3.100 -2.661 -2.717 D 13 11 3 14 3 0 11 84 114 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 13 86 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 2 1 12 84 114 -8.779 -0.003 1.837 -3.100 -2.661 -2.717 D 16 14 3 17 2 0 11 83 113 -8.445 -0.004 IL 17 17 3 17 2 1 12 85 115 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 6 ] - - - - - - B 18 17 3 19 66 0 11 83 113 [ BEGL 7 ] - - - - - - S 19 18 1 20 4 0 0 29 47 -0.039 -7.040 -6.448 -7.088 [ MATP 8 ] 6 20 A U - - MP 20 19 1 24 6 2 2 29 47 -9.266 -9.206 -0.019 -7.982 -8.262 -8.657 -3.813 -2.726 -3.932 3.113 -4.817 -5.555 -0.528 -4.086 -3.731 1.100 -4.315 1.584 -0.736 -4.536 -2.410 -2.709 ML 21 19 1 24 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 22 19 1 24 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 23 19 1 24 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 24 24 5 24 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 25 25 6 25 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 19 c g - - MP 26 25 6 30 6 2 2 27 45 -9.266 -9.206 -0.134 -7.982 -3.668 -8.657 -2.265 -2.237 -2.444 0.846 -2.198 -3.208 1.919 -0.021 -2.447 0.956 -2.962 0.659 1.268 -2.570 0.815 -1.570 ML 27 25 6 30 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 28 25 6 30 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 29 25 6 30 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 30 30 5 30 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 31 31 6 31 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 18 g c - - MP 32 31 6 36 6 2 2 25 43 -9.153 -9.093 -0.020 -7.869 -8.149 -8.544 -3.053 -2.472 -3.110 1.058 -3.073 -3.908 1.181 -3.322 -3.188 2.287 -3.660 0.941 1.598 -3.199 -0.766 -2.093 ML 33 31 6 36 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 34 31 6 36 6 1 1 24 43 -7.968 -6.697 -0.605 -6.675 -1.809 -4.888 -0.508 -1.520 1.273 -0.914 D 35 31 6 36 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 36 36 5 36 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 37 37 6 37 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 17 A U - - MP 38 37 6 42 4 2 2 23 41 -7.332 -7.539 -0.041 -5.953 -4.479 -3.354 -4.424 3.642 -5.139 -6.288 -0.791 -4.418 -4.314 0.332 -4.894 -0.736 -1.204 -5.343 -2.729 -3.236 ML 39 37 6 42 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 40 37 6 42 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 41 37 6 42 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 42 42 5 42 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 43 43 6 43 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - u - - - ML 44 43 6 46 3 1 1 20 38 -8.324 -0.016 -6.978 -1.016 0.552 -1.828 0.814 D 45 43 6 46 3 0 0 19 38 -6.174 -1.687 -0.566 IL 46 46 3 46 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 11 - A - - - ML 47 46 3 49 3 1 1 18 37 -8.324 -0.016 -6.978 1.264 -1.811 -0.146 -1.287 D 48 46 3 49 3 0 0 18 37 -6.174 -1.687 -0.566 IL 49 49 3 49 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 12 - U - - - ML 50 49 3 52 3 1 1 17 36 -8.324 -0.016 -6.978 -0.058 -1.111 -1.497 1.152 D 51 49 3 52 3 0 0 17 36 -6.174 -1.687 -0.566 IL 52 52 3 52 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 13 - U - - - ML 53 52 3 55 3 1 1 16 34 -8.324 -0.016 -6.978 -0.007 -1.098 -1.470 1.122 D 54 52 3 55 3 0 0 16 34 -6.174 -1.687 -0.566 IL 55 55 3 55 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 14 - A - - - ML 56 55 3 58 3 1 1 15 33 -8.324 -0.016 -6.978 1.837 -3.100 -2.661 -2.717 D 57 55 3 58 3 0 0 15 33 -6.174 -1.687 -0.566 IL 58 58 3 58 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 15 - A - - - ML 59 58 3 61 3 1 1 13 31 -8.324 -0.016 -6.978 1.837 -3.100 -2.661 -2.717 D 60 58 3 61 3 0 0 13 32 -6.174 -1.687 -0.566 IL 61 61 3 61 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 16 - u - - - ML 62 61 3 64 2 1 1 1 1 * 0.000 0.609 -1.033 -1.246 0.646 D 63 61 3 64 2 0 0 0 0 * 0.000 IL 64 64 3 64 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 19 ] - - - - - - E 65 64 3 -1 0 0 0 0 0 [ BEGR 20 ] - - - - - - S 66 18 1 67 3 0 1 68 98 -8.324 -0.016 -6.978 IL 67 67 2 67 3 1 1 70 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - A - - - ML 68 67 2 70 3 1 2 68 98 -8.324 -0.016 -6.978 1.837 -3.100 -2.661 -2.717 D 69 67 2 70 3 0 0 66 96 -6.174 -1.687 -0.566 IL 70 70 3 70 3 1 1 69 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - C - - - ML 71 70 3 73 3 1 2 67 97 -8.324 -0.016 -6.978 -2.621 1.795 -3.446 -1.865 D 72 70 3 73 3 0 0 65 95 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 1 68 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - A - - - ML 74 73 3 76 3 1 1 66 96 -8.324 -0.016 -6.978 1.237 -0.453 -1.456 -0.869 D 75 73 3 76 3 0 0 64 94 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 1 67 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - A - - - ML 77 76 3 79 3 1 1 65 95 -2.619 -0.270 -6.978 1.327 -1.851 -0.289 -1.341 D 78 76 3 79 3 0 0 60 90 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 67 97 -0.879 -1.208 -5.421 0.000 0.000 0.000 0.000 [ MATL 25 ] 28 - A - - - ML 80 79 3 82 3 1 1 55 74 -8.324 -0.016 -6.978 1.837 -3.100 -2.661 -2.717 D 81 79 3 82 3 0 0 53 73 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 29 - u - - - ML 83 82 3 85 3 1 1 54 73 -8.324 -0.016 -6.978 0.113 -0.088 -1.218 0.631 D 84 82 3 85 3 0 0 52 72 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 56 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 30 - A - - - ML 86 85 3 88 3 1 1 53 72 -8.324 -0.016 -6.978 1.293 -1.828 -0.210 -1.311 D 87 85 3 88 3 0 0 51 71 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 55 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 31 - a - - - ML 89 88 3 91 3 1 1 51 70 -8.324 -0.016 -6.978 0.661 -0.288 -0.212 -0.442 D 90 88 3 91 3 0 0 50 70 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 54 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 32 - C - - - ML 92 91 3 94 3 1 1 50 69 -8.324 -0.016 -6.978 -0.102 1.076 -1.730 -0.601 D 93 91 3 94 3 0 0 49 68 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 33 - A - - - ML 95 94 3 97 3 1 1 49 68 -8.324 -0.016 -6.978 1.837 -3.100 -2.661 -2.717 D 96 94 3 97 3 0 0 48 67 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 34 - C - - - ML 98 97 3 100 3 1 1 48 67 -8.324 -0.016 -6.978 -1.211 1.123 -2.065 0.204 D 99 97 3 100 3 0 0 47 66 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 35 - A - - - ML 101 100 3 103 3 1 1 47 66 -2.708 -0.253 -6.978 1.837 -3.100 -2.661 -2.717 D 102 100 3 103 3 0 0 45 64 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 47 66 -1.975 -0.501 -4.675 0.000 0.000 0.000 0.000 [ MATL 33 ] 37 - A - - - ML 104 103 3 106 5 1 1 46 64 -7.412 -0.031 -7.228 -7.440 -8.331 1.837 -3.100 -2.661 -2.717 D 105 103 3 106 5 0 0 44 63 -4.959 -0.803 -4.221 -2.596 -2.508 IL 106 106 3 106 5 1 1 46 65 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 38 68 A U - - MP 107 106 3 111 6 2 2 45 63 -9.266 -9.206 -0.019 -7.982 -8.262 -8.657 -4.479 -3.354 -4.424 3.642 -5.139 -6.288 -0.791 -4.418 -4.314 0.332 -4.894 -0.736 -1.204 -5.343 -2.729 -3.236 ML 108 106 3 111 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 109 106 3 111 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 110 106 3 111 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 111 111 5 111 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 112 112 6 112 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 39 67 a u - - MP 113 112 6 117 6 2 2 43 61 -9.266 -9.206 -0.019 -7.982 -8.262 -8.657 -3.776 -2.697 -3.829 2.863 -4.474 -4.984 -0.058 -4.062 -3.758 2.348 -4.268 -0.217 -0.341 -4.149 -2.001 -2.668 ML 114 112 6 117 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 115 112 6 117 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 116 112 6 117 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 117 117 5 117 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 118 118 6 118 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 40 66 a u - - MP 119 118 6 123 6 2 2 41 59 -9.266 -9.206 -0.019 -7.982 -8.262 -8.657 -3.776 -2.697 -3.829 2.863 -4.474 -4.984 -0.058 -4.062 -3.758 2.348 -4.268 -0.217 -0.341 -4.149 -2.001 -2.668 ML 120 118 6 123 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 121 118 6 123 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 122 118 6 123 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 123 123 5 123 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 124 124 6 124 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 41 65 G C - - MP 125 124 6 129 6 2 2 39 57 -9.266 -9.206 -0.019 -7.982 -8.262 -8.657 -4.244 -2.863 -4.240 1.503 -5.016 -4.717 -0.341 -4.637 -4.160 3.350 -4.534 -0.484 -0.631 -4.156 -2.343 -3.130 ML 126 124 6 129 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 6 129 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 6 129 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 42 64 C G - - MP 131 130 6 135 6 2 2 37 55 -9.266 -9.206 -0.019 -7.982 -8.262 -8.657 -5.350 -5.323 -4.898 -1.502 -3.464 -5.203 3.738 -4.354 -4.986 -1.351 -5.148 -3.293 -0.046 -5.363 -1.202 -3.803 ML 132 130 6 135 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 6 135 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 43 63 c g - - MP 137 136 6 141 6 2 2 35 53 -9.266 -9.206 -0.019 -7.982 -8.262 -8.657 -3.277 -2.835 -3.319 1.432 -2.936 -4.112 2.277 -3.354 -3.362 2.003 -3.843 -0.662 1.032 -3.435 -0.581 -2.238 ML 138 136 6 141 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 6 141 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 44 62 g c - - MP 143 142 6 147 6 2 2 33 51 -9.266 -9.206 -0.019 -7.982 -8.262 -8.657 -3.240 -2.657 -3.273 1.958 -3.151 -4.064 1.772 -3.446 -3.365 2.187 -3.830 -0.460 0.797 -3.362 -0.808 -2.235 ML 144 142 6 147 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 45 61 c g - - MP 149 148 6 153 6 2 2 31 49 -9.266 -9.206 -0.019 -7.982 -8.262 -8.657 -3.342 -3.221 -3.379 1.412 -2.640 -4.140 2.546 -3.223 -3.368 0.770 -3.858 -1.168 1.790 -3.559 -0.312 -2.273 ML 150 148 6 153 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 46 60 c g - - MP 155 154 6 159 6 2 2 29 47 -9.266 -9.206 -0.019 -7.982 -8.262 -8.657 -4.076 -4.023 -3.914 -0.204 -2.758 -4.458 2.731 -3.496 -3.915 -0.006 -4.290 -1.964 2.512 -4.198 -0.414 -2.761 ML 156 154 6 159 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 158 154 6 159 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 159 159 5 159 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 160 160 6 160 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 47 59 C G - - MP 161 160 6 165 6 2 2 27 45 -9.266 -9.206 -0.019 -7.982 -8.262 -8.657 -4.212 -4.162 -4.004 -0.322 -2.782 -4.507 3.107 -3.542 -4.010 -0.124 -4.360 -2.097 1.980 -4.310 -0.436 -2.844 ML 162 160 6 165 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 163 160 6 165 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 164 160 6 165 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 165 165 5 165 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 166 166 6 166 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 48 58 U A - - MP 167 166 6 171 6 2 2 25 43 -9.266 -9.206 -0.019 -7.982 -8.262 -8.657 -5.114 -4.952 -4.844 -1.194 -3.609 -5.320 0.728 -4.362 -4.842 -1.047 -5.169 -2.823 3.637 -5.220 -1.264 -3.549 ML 168 166 6 171 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 169 166 6 171 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 170 166 6 171 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 171 171 5 171 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 172 172 6 172 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 49 57 A U - - MP 173 172 6 177 4 2 2 23 41 -7.332 -7.539 -0.041 -5.953 -4.479 -3.354 -4.424 3.642 -5.139 -6.288 -0.791 -4.418 -4.314 0.332 -4.894 -0.736 -1.204 -5.343 -2.729 -3.236 ML 174 172 6 177 4 1 1 24 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 175 172 6 177 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 176 172 6 177 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 177 177 5 177 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 178 178 6 178 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 50 - c - - - ML 179 178 6 181 3 1 1 20 38 -8.324 -0.016 -6.978 0.024 0.993 -1.655 -0.566 D 180 178 6 181 3 0 0 19 38 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 51 - g - - - ML 182 181 3 184 3 1 1 18 37 -8.324 -0.016 -6.978 0.214 -1.075 0.386 0.081 D 183 181 3 184 3 0 0 18 37 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 52 - G - - - ML 185 184 3 187 3 1 1 17 36 -8.324 -0.016 -6.978 -2.325 -3.645 1.847 -3.028 D 186 184 3 187 3 0 0 17 35 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 53 - C - - - ML 188 187 3 190 3 1 1 16 35 -8.324 -0.286 -2.501 -2.621 1.795 -3.446 -1.865 D 189 187 3 190 3 0 0 16 34 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 54 - G - - - ML 191 190 3 193 3 1 1 15 33 -8.058 -0.019 -6.712 -1.779 -3.029 1.765 -2.417 D 192 190 3 193 3 0 0 14 32 -7.760 -3.273 -0.165 IL 193 193 3 193 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 55 - A - - - ML 194 193 3 196 3 1 1 13 31 -8.058 -0.019 -6.712 1.757 -2.561 -2.174 -2.122 D 195 193 3 196 3 0 0 12 31 -7.760 -0.376 -2.152 IL 196 196 3 196 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 56 - A - - - ML 197 196 3 199 2 1 1 1 1 * 0.000 1.837 -3.100 -2.661 -2.717 D 198 196 3 199 2 0 0 0 0 * 0.000 IL 199 199 3 199 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 53 ] - - - - - - E 200 199 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME RefA9 ACC RF02844 DESC Enterococcus sRNA A9 LENG 64 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 9 09:50:03 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02844/CM NSEQ 4 EFFN 3.410156 CKSUM 527151334 STATS LOCAL MSV -8.2138 0.72454 STATS LOCAL VITERBI -9.0493 0.72454 STATS LOCAL FORWARD -3.0049 0.72454 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.01128 1.58931 1.56942 1.49605 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 0.00000 * 1 1.31913 2.86125 0.52553 2.47462 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 2 2.31514 0.57533 2.91841 1.25628 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 3 1.31913 2.86125 0.52553 2.47462 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 4 0.09545 3.69312 3.37540 3.44400 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 5 0.09545 3.69312 3.37540 3.44400 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 6 0.54037 3.14983 1.13582 2.92900 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 7 1.93098 1.12399 1.43445 1.23180 7 c - - < 1.38629 1.38629 1.38629 1.38629 0.22202 4.12713 1.69841 1.46634 0.26236 1.09861 0.40547 8 1.87204 1.87443 0.81323 1.38901 8 g - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94460 3.94460 1.46634 0.26236 0.16237 1.89795 9 0.19733 3.34910 2.25118 3.25215 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 10 2.16780 0.97845 2.73809 0.80971 10 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 11 0.48637 2.73386 1.48002 2.38003 11 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 12 1.43821 2.21758 2.48898 0.56075 12 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 13 1.40042 2.20690 2.46787 0.58214 13 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 14 0.09545 3.69312 3.37540 3.44400 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 15 0.09545 3.69312 3.37540 3.44400 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 16 0.95061 2.14993 2.29639 0.92538 16 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 17 3.30350 2.56784 3.07995 0.17366 17 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 18 1.56310 1.18220 1.49489 1.34846 18 c - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 19 1.69284 1.93234 0.99115 1.20383 19 g - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 20 3.11380 2.03248 2.92640 0.26011 20 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 21 0.09545 3.69312 3.37540 3.44400 21 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 22 3.39093 0.11830 3.95412 2.83495 22 C - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 23 0.50080 1.70059 2.47029 2.06498 23 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 24 0.44230 2.76261 1.58337 2.41870 24 A - - - 1.38629 1.38629 1.38629 1.38629 0.22202 1.69841 4.12713 1.12269 0.39364 1.09861 0.40547 25 0.09545 3.69312 3.37540 3.44400 28 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 26 1.31000 1.44031 2.26717 0.94232 29 u - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 27 0.46595 2.74622 1.52654 2.39681 30 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 28 0.91611 1.57932 1.52941 1.73077 31 a - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 29 1.47671 0.60101 2.67646 1.86725 32 C - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 30 0.09545 3.69312 3.37540 3.44400 33 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 31 2.31514 0.57533 2.91841 1.25628 34 C - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 32 0.09545 3.69312 3.37540 3.44400 35 A - - - 1.38629 1.38629 1.38629 1.38629 0.20952 1.75504 4.12713 0.17714 1.81807 1.09861 0.40547 33 0.09545 3.69312 3.37540 3.44400 37 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 34 0.19631 3.35665 2.25301 3.26216 38 A - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 35 0.70104 2.79565 0.98905 2.64615 39 a - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 36 0.70115 2.79498 0.98918 2.64528 40 a - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 37 1.63883 2.95222 0.36545 2.81869 41 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 38 3.67108 0.14926 3.50100 2.48847 42 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 39 1.64850 1.12098 1.20847 1.69801 43 c - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 40 1.29593 1.47181 1.08057 1.84869 44 g - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 41 1.66909 0.94000 1.98577 1.25992 45 c - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 42 2.77105 0.82999 2.53912 0.86177 46 c - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 43 2.85189 0.56772 2.62265 1.19456 47 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 44 3.51756 2.33349 3.32843 0.17731 48 U - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 45 0.19739 3.34866 2.25107 3.25157 49 A - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 46 1.38204 0.65955 2.61835 1.83931 50 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 47 1.24202 2.16978 1.09751 1.33447 51 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 48 3.15121 4.08303 0.08951 3.65097 52 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 49 3.39093 0.11830 3.95412 2.83495 53 C - - _ 1.38629 1.38629 1.38629 1.38629 0.23401 4.12713 1.64758 1.46634 0.26236 1.09861 0.40547 50 2.76693 3.65378 0.13736 3.22909 54 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03995 3.93308 3.93308 1.46634 0.26236 2.63447 0.07446 51 0.14442 3.30432 3.02206 3.01491 55 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03995 3.93308 3.93308 1.46634 0.26236 0.15492 1.94132 52 0.09545 3.69312 3.37540 3.44400 56 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 53 3.46543 2.59702 3.15508 0.16063 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 54 0.20116 3.51942 2.16914 3.26155 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 55 1.32906 2.78906 0.51015 2.61194 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 56 0.95828 2.70709 0.75430 2.53353 60 g - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 57 1.42753 2.15690 0.84503 1.53772 61 g - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 58 2.08373 1.18972 1.35397 1.16151 62 u - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 59 1.92966 1.31691 1.02383 1.48006 63 g - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 60 2.76774 3.66477 0.12850 3.43671 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 61 3.05042 0.41677 2.76639 1.46706 65 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 62 2.86911 1.11646 2.59862 0.61353 66 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 63 2.86770 1.11659 2.59804 0.61368 67 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 64 3.45992 2.59609 3.15263 0.16103 68 U - - > 1.38629 1.38629 1.38629 1.38629 0.01653 4.11087 * 1.46634 0.26236 0.00000 * //