# STOCKHOLM 1.0
#=GF ID RefA9
#=GF AC RF02844
#=GF DE Enterococcus sRNA A9
#=GF AU Repoila F; 0000-0001-5149-9698
#=GF GA 49.0
#=GF NC 47.4
#=GF TC 50.5
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold;
#=GF TP Gene; antisense;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000644; antisense_RNA;
#=GF RN [1]
#=GF RM 25737579
#=GF RT Whole-genome mapping of 5' RNA ends in bacteria by tagged sequencing: a
#=GF RT comprehensive view in Enterococcus faecalis.
#=GF RA Innocenti N, Golumbeanu M, Fouquier d'Herouel A, Lacoux C, Bonnin RA,
#=GF RA Kennedy SP, Wessner F, Serror P, Bouloc P, Repoila F, Aurell E
#=GF RL RNA. 2015;21:1018-1030.
#=GF RN [2]
#=GF RM 21912655
#=GF RT Genome-wide identification of small RNAs in the opportunistic pathogen
#=GF RT Enterococcus faecalis V583.
#=GF RA Shioya K, Michaux C, Kuenne C, Hain T, Verneuil N, Budin-Verneuil A,
#=GF RA Hartsch T, Hartke A, Giard JC
#=GF RL PLoS One. 2011;6:e23948.
#=GF CC Name ‘Ref’ stands for RNA in E. faecalis. Encoded by pTEF1 plasmid. 
#=GF WK Enterococcus_faecalis
#=GF SQ 4

CP003504.1/1004836-1004900   GCGAAGCGAUAUUAAUUUUUACCA---AUGGAACACAAAAACCACUCUACGGCGAAUAGAGUGGUUUU
CM002129.1/2617468-2617533   GCGAAAU-ACGAUAAUUGGUACAAGUUACAACACA-AAGGGCCGACCUACUGCGAAUAGGUCGGCCCU
JJMM01000013.1/177821-177882 AUAAAAGUAUAUAAAAUAUUACAA---AAACCAUA-AAAAGCGCCUUUAAAGC--AUAAAGGCGCUUU
AE016833.1/63483-63420       GCGAAACGACAUUAAAUCGUACAG---AUAACACA-AAAAGCAAUCCUACGGCGAAUAGGAUUGCUUU
#=GC SS_cons                 :::::<<<<_______>>>>::::...::::::::.:<<<<<<<<<<<<_______>>>>>>>>>>>>
#=GC RF                      GCGAAAcgAuAUUAAuUcgUACAA...AuAaCACA.AAaaGCcgccCUAcgGCGAAUAGggcgGCuuU
//
