# STOCKHOLM 1.0
#=GF ID Ref66
#=GF AC RF02839
#=GF DE Enterococcus sRNA 66
#=GF AU Repoila F; 0000-0001-5149-9698
#=GF GA 92.0
#=GF NC 36.8
#=GF TC 95.6
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold;
#=GF TP Gene; antisense;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000644; antisense_RNA;
#=GF RN [1]
#=GF RM 25737579
#=GF RT Whole-genome mapping of 5' RNA ends in bacteria by tagged sequencing: a
#=GF RT comprehensive view in Enterococcus faecalis.
#=GF RA Innocenti N, Golumbeanu M, Fouquier d'Herouel A, Lacoux C, Bonnin RA,
#=GF RA Kennedy SP, Wessner F, Serror P, Bouloc P, Repoila F, Aurell E
#=GF RL RNA. 2015;21:1018-1030.
#=GF CC Name ‘Ref’ stands for RNA in E. faecalis. 
#=GF WK Enterococcus_faecalis
#=GF SQ 2

CSXB01000067.1/316-206   AAAGAGAGGUAUGCGGGUACAUACCUCUCCUUUUAUACCAACACCAGUUAUAAGAACUGGUGGCUUACUGAGUUAA--GUUUUG------AAUCUUAACCGUUCGGC-CUACGAAGCUUG
AE016830.1/681566-681449 AAAGAGAGAUAUGCAGGAACAUACCUCUC-UAGUA-GCCACUACUAGUUAUAAGAACUAGCGGCUUACUGAGUUAUUGGUUUUAUUUCAAACGCUUAACCGUUCAGCUCCUCAAAGCUUA
#=GC SS_cons             ::<<<<<<-<<<<______>>>>->>>>>-><<<<-<<<----<<<<<<_____>>>>>>->>>->>>><<<<<<-<<<<<_______________>>>>>->->>>>>:::::::::::
#=GC RF                  AAaGaGaGauauGCaGGaACauaCCuCuCcuaguaUgCCAauACcaGuuAUAAGaaCugGuGGcUuacuGaGuuaacGGuuUUaUUUcAAAauCUUaaCCgUuCagCuCuaCaAAGCUUa
//
