INFERNAL1/a [1.1.4 | Dec 2020] NAME Ref55 ACC RF02838 DESC Enterococcus sRNA 55 STATES 166 NODES 41 CLEN 54 W 69 ALPH RNA RF no CONS yes MAP yes DATE Mon Jan 15 14:53:36 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 4.000000 CKSUM 1311230568 NULL 0.000 0.000 0.000 0.000 GA 43.00 TC 43.80 NC 42.20 EFP7GF -7.3634 0.72888 ECMLC 0.46899 -8.74533 4.47721 1600000 592069 0.002027 ECMGC 0.49032 -12.66177 0.47214 1600000 250531 0.001597 ECMLI 0.48598 -6.22813 5.72014 1600000 398989 0.003008 ECMGI 0.50678 -8.94937 2.92928 1600000 164607 0.002430 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 69 88 -7.615 -7.822 -0.033 -6.236 IL 1 1 2 1 4 1 8 73 93 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 7 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 8 69 88 -8.593 -0.013 -7.247 -0.929 -1.332 -0.320 1.187 D 4 2 3 5 3 0 2 68 87 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 6 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 8 68 87 -8.593 -0.013 -7.247 1.889 -3.622 -3.140 -3.290 D 7 5 3 8 3 0 1 67 86 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 6 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 7 67 86 -8.593 -0.013 -7.247 -2.677 -2.478 -3.451 1.837 D 10 8 3 11 3 0 0 66 85 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 5 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 6 66 85 -8.593 -0.013 -7.247 1.889 -3.622 -3.140 -3.290 D 13 11 3 14 3 0 0 65 84 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 4 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 6 65 84 -8.593 -0.013 -7.247 -2.677 -2.478 -3.451 1.837 D 16 14 3 17 3 0 0 64 83 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 4 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - a - - - ML 18 17 3 20 3 1 5 64 83 -8.593 -0.013 -7.247 0.806 -1.224 -1.404 0.532 D 19 17 3 20 3 0 0 62 82 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 3 66 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 4 63 82 -2.655 -0.261 -7.247 -2.677 -2.478 -3.451 1.837 D 22 20 3 23 3 0 0 61 80 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 3 63 82 -2.084 -0.458 -4.784 0.000 0.000 0.000 0.000 [ MATL 8 ] 9 - U - - - ML 24 23 3 26 3 1 4 61 80 -8.593 -0.013 -7.247 -0.020 -1.301 -1.678 1.199 D 25 23 3 26 3 0 0 60 79 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 2 64 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - U - - - ML 27 26 3 29 3 1 4 60 79 -8.593 -0.013 -7.247 -2.677 -2.478 -3.451 1.837 D 28 26 3 29 3 0 0 59 78 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 2 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - U - - - ML 30 29 3 32 3 1 3 59 78 -8.593 -0.013 -7.247 -0.929 -1.332 -0.320 1.187 D 31 29 3 32 3 0 0 58 77 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 1 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 12 - G - - - ML 33 32 3 35 3 1 3 58 77 -8.593 -0.013 -7.247 -2.823 -4.195 1.895 -3.558 D 34 32 3 35 3 0 0 57 76 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 1 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 13 - u - - - ML 36 35 3 38 3 1 2 57 76 -8.593 -0.013 -7.247 0.222 -1.055 -0.109 0.511 D 37 35 3 38 3 0 0 56 75 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 1 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 14 - U - - - ML 39 38 3 41 3 1 2 56 75 -8.593 -0.013 -7.247 -2.677 -2.478 -3.451 1.837 D 40 38 3 41 3 0 0 55 74 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 1 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 15 - U - - - ML 42 41 3 44 3 1 1 55 74 -8.950 -0.012 -7.267 -0.020 -1.301 -1.678 1.199 D 43 41 3 44 3 0 0 54 72 -5.620 -0.734 -1.403 IL 44 44 3 44 3 1 1 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 55 - G - - MR 45 44 3 47 3 1 1 54 73 -8.950 -0.012 -7.267 0.120 -2.290 1.270 -1.747 D 46 44 3 47 3 0 0 52 71 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 1 55 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 54 - U - - MR 48 47 3 50 3 1 1 53 72 -8.950 -0.012 -7.267 -2.677 -2.478 -3.451 1.837 D 49 47 3 50 3 0 0 51 70 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 1 54 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 53 - U - - MR 51 50 3 53 3 1 1 52 71 -8.950 -0.012 -7.267 -2.677 -2.478 -3.451 1.837 D 52 50 3 53 3 0 0 50 69 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 1 53 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 52 - U - - MR 54 53 3 56 3 1 1 51 70 -8.950 -0.012 -7.267 -0.929 -1.332 -0.320 1.187 D 55 53 3 56 3 0 0 49 68 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 1 52 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 51 - U - - MR 57 56 3 59 5 1 1 50 69 -7.656 -0.026 -7.471 -7.683 -8.575 -2.677 -2.478 -3.451 1.837 D 58 56 3 59 5 0 0 49 67 -5.352 -0.707 -2.978 -4.409 -2.404 IR 59 59 3 59 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 50 A U - - MP 60 59 3 64 6 2 2 49 68 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -5.003 -3.794 -4.847 3.771 -5.908 -7.143 -1.529 -4.807 -4.794 -0.246 -5.395 -1.126 -1.928 -6.065 -3.460 -3.682 ML 61 59 3 64 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 3 64 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 3 64 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 49 G C - - MP 66 65 6 70 4 2 2 47 66 -7.615 -7.822 -0.361 -2.239 -5.941 -3.685 -6.268 -0.655 -6.883 -5.136 -1.953 -6.515 -5.029 3.829 -5.299 -1.454 -2.316 -5.228 -4.074 -5.128 ML 67 65 6 70 4 1 1 48 67 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 4 1 1 47 66 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 69 65 6 70 4 0 0 46 65 -4.568 -4.250 -2.265 -0.520 IL 70 70 5 70 4 1 1 49 68 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 71 71 6 71 3 1 1 48 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - u - - - ML 72 71 6 74 5 1 1 44 63 -7.381 -0.032 -7.197 -7.409 -8.301 -0.382 -0.050 0.052 0.299 D 73 71 6 74 5 0 0 43 62 -6.295 -0.267 -5.556 -3.931 -3.844 IL 74 74 3 74 5 1 1 45 63 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 19 48 g c - - MP 75 74 3 79 6 2 2 43 62 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -3.210 -2.671 -3.261 2.030 -3.244 -4.063 0.948 -3.499 -3.365 2.234 -3.839 -0.518 0.604 -3.352 0.978 -2.271 ML 76 74 3 79 6 1 1 42 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 3 79 6 1 1 42 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 3 79 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 43 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 20 47 G C - - MP 81 80 6 85 6 2 2 41 60 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -4.418 -2.988 -4.399 1.691 -5.335 -4.891 -0.583 -4.833 -4.339 3.346 -4.705 -0.593 -0.857 -4.316 -2.587 -3.283 ML 82 80 6 85 6 1 1 40 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 40 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 41 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 46 c g - - MP 87 86 6 91 6 2 2 39 58 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -3.954 -3.161 -4.026 0.193 -3.407 -4.646 2.508 -3.798 -3.833 0.468 -4.202 2.388 0.382 -4.283 -1.049 -2.822 ML 88 86 6 91 6 1 1 38 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 38 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 39 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 22 45 c g - - MP 93 92 6 97 6 2 2 37 56 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -4.797 -4.854 -4.442 -1.049 -3.057 -4.806 2.995 -3.881 -4.483 -0.914 -4.751 -2.915 0.445 -4.820 2.312 -3.312 ML 94 92 6 97 6 1 1 36 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 36 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 37 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 44 U A - - MP 99 98 6 103 6 2 2 35 54 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -4.511 -4.479 -4.274 -0.626 -3.008 -4.751 2.363 -3.783 -4.283 -0.452 -4.618 -2.420 3.006 -4.597 -0.663 -3.111 ML 100 98 6 103 6 1 1 34 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 34 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 35 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 24 43 a u - - MP 105 104 6 109 6 2 2 33 52 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -3.906 -3.435 -3.884 2.834 -3.299 -4.690 2.111 -3.757 -3.865 0.569 -4.322 -1.171 0.438 -4.174 -0.982 -2.775 ML 106 104 6 109 6 1 1 32 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 32 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 33 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 25 42 C G - - MP 111 110 6 115 6 2 2 31 50 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -5.950 -5.973 -5.383 -2.142 -3.866 -5.609 3.825 -4.822 -5.519 -2.037 -5.588 -3.985 -0.541 -5.921 -1.647 -4.326 ML 112 110 6 115 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 26 41 U G - - MP 117 116 6 121 6 2 2 29 48 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -5.010 -5.118 -4.561 -1.342 -3.096 -4.853 2.395 -3.950 -4.623 -1.230 -4.844 -3.257 0.315 -4.983 3.010 -3.449 ML 118 116 6 121 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 27 40 U A - - MP 123 122 6 127 6 2 2 27 46 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -4.514 -4.483 -4.276 -0.630 -3.009 -4.751 2.353 -3.784 -4.285 -0.456 -4.619 -2.424 3.014 -4.599 -0.664 -3.113 ML 124 122 6 127 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 28 39 C G - - MP 129 128 6 133 6 2 2 25 44 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -5.950 -5.973 -5.383 -2.142 -3.866 -5.609 3.825 -4.822 -5.519 -2.037 -5.588 -3.985 -0.541 -5.921 -1.647 -4.326 ML 130 128 6 133 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 29 38 G C - - MP 135 134 6 139 6 2 2 23 42 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -5.941 -3.685 -6.268 -0.655 -6.883 -5.136 -1.953 -6.515 -5.029 3.829 -5.299 -1.454 -2.316 -5.228 -4.074 -5.128 ML 136 134 6 139 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 30 37 U A - - MP 141 140 6 145 6 2 2 21 40 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -4.511 -4.479 -4.274 -0.626 -3.008 -4.751 2.363 -3.783 -4.283 -0.452 -4.618 -2.420 3.006 -4.597 -0.663 -3.111 ML 142 140 6 145 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 31 36 u g - - MP 147 146 6 151 4 2 2 19 38 -7.615 -7.822 -0.033 -6.236 -4.774 -4.834 -4.423 -1.095 -3.066 -4.789 1.246 -3.885 -4.473 -0.971 -4.740 -2.933 2.050 -4.807 2.966 -3.319 ML 148 146 6 151 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 150 146 6 151 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 151 151 5 151 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 152 152 6 152 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 32 - G - - - ML 153 152 6 155 3 1 1 16 34 -8.593 -0.013 -7.247 -2.823 -4.195 1.895 -3.558 D 154 152 6 155 3 0 0 16 34 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 33 - g - - - ML 156 155 3 158 3 1 1 14 33 -8.593 -0.013 -7.247 0.093 -1.213 0.508 0.111 D 157 155 3 158 3 0 0 15 33 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 34 - c - - - ML 159 158 3 161 3 1 1 13 31 -8.593 -0.013 -7.247 -0.577 0.340 -0.237 0.282 D 160 158 3 161 3 0 0 13 32 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 35 - a - - - ML 162 161 3 164 2 1 1 1 1 * 0.000 0.864 -2.052 0.666 -1.504 D 163 161 3 164 2 0 0 0 0 * 0.000 IL 164 164 3 164 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 40 ] - - - - - - E 165 164 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Ref55 ACC RF02838 DESC Enterococcus sRNA 55 LENG 54 MAXL 131 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jan 15 14:53:36 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 4 EFFN 3.386719 CKSUM 1311230568 STATS LOCAL MSV -8.5288 0.72888 STATS LOCAL VITERBI -8.7805 0.72888 STATS LOCAL FORWARD -3.1808 0.72888 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.64476 1.65115 1.28373 1.08439 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 0.00000 * 1 1.93590 2.22063 1.61049 0.60262 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 2 0.09633 3.68442 3.36743 3.43442 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 3 3.03536 2.92910 3.56656 0.13898 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 4 0.09633 3.68442 3.36743 3.43442 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 5 3.03536 2.92910 3.56656 0.13898 5 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 6 0.85151 2.16481 2.29010 1.02946 6 a - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 7 3.03536 2.92910 3.56656 0.13898 7 U - - : 1.38629 1.38629 1.38629 1.38629 0.19836 1.80913 4.12713 0.18649 1.77116 1.09861 0.40547 8 1.38943 2.20062 2.45855 0.58971 9 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 9 3.03536 2.92910 3.56656 0.13898 10 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 10 1.93590 2.22063 1.61049 0.60262 11 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 11 3.14286 4.07382 0.09033 3.64206 12 G - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 12 1.23166 2.06959 1.47210 1.04267 13 u - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 13 3.03536 2.92910 3.56656 0.13898 14 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 14 1.38943 2.20062 2.45855 0.58971 15 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 15 0.19875 3.34253 2.24394 3.24780 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 16 2.87857 3.68197 0.11444 3.62138 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.23746 4.12713 1.63352 1.46634 0.26236 1.09861 0.40547 17 1.61127 1.43549 1.37238 1.17485 18 u - - - 1.38629 1.38629 1.38629 1.38629 0.04009 3.92977 3.92977 1.46634 0.26236 0.15291 1.95337 18 1.31972 1.89283 1.07205 1.42779 19 g - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 19 1.54133 2.88787 0.40593 2.75119 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 20 2.27578 1.04735 0.90841 1.94315 21 g - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 21 3.02205 0.69969 2.82988 0.92751 22 c - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 22 2.80720 1.08652 2.57995 0.64158 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 23 0.85857 1.27628 1.89287 1.92059 24 a - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 24 3.64998 0.15145 3.48430 2.47844 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 25 3.18728 1.06374 3.01278 0.57200 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 26 2.81002 1.09224 2.58234 0.63727 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 27 3.65110 0.15137 3.48490 2.47866 28 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 28 2.87151 3.67214 0.11557 3.60805 29 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 29 2.80840 1.08640 2.58047 0.64145 30 U - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 30 3.02632 1.70136 2.83684 0.34184 31 U - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 31 3.14286 4.07382 0.09033 3.64206 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 32 1.31089 2.17031 1.06418 1.30464 33 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 33 1.73034 1.18045 1.56120 1.18499 34 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 34 0.81079 2.67691 0.95407 2.28724 35 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 35 1.30973 2.99685 0.48003 2.79039 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 36 0.71706 2.74711 0.99084 2.57130 37 a - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 37 3.77696 0.13876 3.51612 2.56457 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 38 2.75619 3.64861 0.13040 3.42053 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 39 0.71252 2.74878 0.99624 2.57281 40 a - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 40 2.25074 3.16546 0.22318 2.94663 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 41 2.75484 3.64651 0.13065 3.41816 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 42 2.16482 2.08487 1.17916 0.79105 43 u - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 43 0.71745 2.74480 0.99131 2.56842 44 a - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 44 2.16692 2.98444 0.25762 2.78035 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 45 2.17831 2.10705 0.97252 0.94922 46 u - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 46 2.95429 0.46525 2.68994 1.37825 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 47 2.04066 1.18453 1.35436 1.18399 48 u - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 48 3.81403 0.13659 3.53398 2.57145 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 49 3.48568 2.59276 3.15729 0.16015 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 50 3.03536 2.92910 3.56656 0.13898 51 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 51 1.93590 2.22063 1.61049 0.60262 52 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 52 3.03536 2.92910 3.56656 0.13898 53 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 53 3.03536 2.92910 3.56656 0.13898 54 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 54 1.29501 2.84408 0.54096 2.45659 55 G - - : 1.38629 1.38629 1.38629 1.38629 0.01653 4.11087 * 1.46634 0.26236 0.00000 * //