# STOCKHOLM 1.0
#=GF ID Bcj14
#=GF AC RF02836
#=GF DE Burkholderia RNA 14
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 59.0
#=GF NC 58.8
#=GF TC 60.0
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF DR GO; 0005515; protein binding;
#=GF RN [1]
#=GF RM 23142676
#=GF RT Experimental identification of small non-coding regulatory RNAs in the
#=GF RT opportunistic human pathogen Burkholderia cenocepacia J2315.
#=GF RA Ramos CG, Grilo AM, da Costa PJ, Leitao JH
#=GF RL Genomics. 2013;101:139-148.
#=GF CC Co-purified with Hfq, expression confirmed by Northern blot. Putative
#=GF CC functional homologue of PA-SraF. Overlaps coding sequence. 
#=GF WK Burkholderia_cenocepacia
#=GF SQ 3

CP002599.1/3752808-3752636 GUCGGCGUCGUGACGGUCCAGCCGCAAUCGGUGCCGGUCGUCACCGAACUGCCGGGCC--GCACCAGUGC---CUUCCUGGUCGCCCAGGUGCGGGCACGGGU-CGACGGUAUCGUGCUGCGUCGCGAAUUCACCGAAGGCACCGAUGUCAAGGCAGGGCAACGCCUGUACAAGAUCGA
CP001043.1/541978-542150   GUCGGCGUCGUCACGGUCCAGCCGCAAGCCGUGCCCGUCGUCACCGAACUGCCGGGCCGCACCAGUGCGU--UCCUCGUUGCG---CAAGUGCGCGCG-CGGGUGGACGGCAUCGUGCUGCGCCGGGAAUUUACGGAAGGCACGCAGGUCAAGGCCGGCCAGCGUCUGUACAAGAUCGA
AM747722.1/865355-865183   GUCGGCGUCGUCACCGUGCAGCCGCAAGCCGUGCCGGCGGUGACCGAACUGCCGGGCC--GCACCAGUGCAUUCCUCGUCGCG---CAGGUGCGUGCGCGGGU-CGACGGCAUCGUGCUGCGUCGUGAAUUCACCGAAGGCACCGACGUCAAGGCCGGCCAGCGUCUGUACAAGAUCGA
#=GC SS_cons               ::<<<<<<<<<<<<<<-<<-<<<<_____>>->>->>>>>>>>->>>-->>>>>((((..(((-(-((((..-(-((,,<<<<...<______>>>>><<-<-.<<-<<<<<___>>>>>>>->->>,,,,,,,,))-)))))-)-)))---))))::::::<<<<<_____>>>->>:
#=GC RF                    GUCGGCguCGugaCggUccAGCCgCAAgCcGUGCCggccGucaCCGaACcGCCGgGCC..gCgccaGuGc..UCcuCgUcGcg...CAgGUGCGcgCgcgGGu.cGACgGcaUCGugCcGCguCGcgAAUUcACcGaAGgCaCcgAcGcCAAGGCcGGcCAgCGuCuGUACAaGaUCGA
//
