# STOCKHOLM 1.0
#=GF ID Bcj11
#=GF AC RF02835
#=GF DE Burkholderia RNA 11
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 49.0
#=GF NC 48.4
#=GF TC 49.1
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF DR GO; 0005515; protein binding;
#=GF RN [1]
#=GF RM 23142676
#=GF RT Experimental identification of small non-coding regulatory RNAs in the
#=GF RT opportunistic human pathogen Burkholderia cenocepacia J2315.
#=GF RA Ramos CG, Grilo AM, da Costa PJ, Leitao JH
#=GF RL Genomics. 2013;101:139-148.
#=GF CC Co-purified with Hfq, expression confirmed by Northern blot. Predicted
#=GF CC target marZ. Overlaps coding sequence.
#=GF WK Burkholderia_cenocepacia
#=GF SQ 4

JRKM01000001.1/1213986-1213865 GCAACCUGAAGCUGGCGGCCGAGUACCCCAGCGUGUUCCGCUCGC-UGCUGGGGAUUUCGUGGAUGUGGUUCUUUGGCGCGGUCUUCCUGUCGCAGUUCCCUGCGUUCGCCAAGGAGGUGCUG
CP000539.1/4119161-4119040     GCAACCUGAAGCUGGCGCACGGCAACACCGUGGUGUUCCGCUCGC-UGCUGGGCAUCUCGUGGAUGUGGUUCUUCGGCGCGGUGUUCCUGUCGCAGUUCCCCAGCUUCGCCAAGGACGUGCUG
CP010951.1/1902359-1902238     GCAAUCUCAAGCUCGCGCACGGCAACGC-GGUGGUGUUCCGCUCGCUGCUGGGCAUCAGCUGGAUGUGGUUCUUCGGCGCGGUGUUCCUGUCGCAGUUCCCCAGCUUCGCCAAGGAGGUGCUG
CP000555.1/3947785-3947906     GCAACCUGAAGCUCGCGCACGGCAACCUG-GUGGUGUUCCGUUCGCUGCUCGGCAUCUCGUGGAUGUGGUUCUUCGGCGCGGUGUUCCUGUCGAUGUUCCCGGCCUUCGCGAAGGAGGUGCUG
#=GC SS_cons                   :::::::::<<<-<<-<<<-<<<<<<______>>>>>>->>>->>.->>>:<<<<<-<<<<<<<<<-<<--<<-<<<<<-<<____>>>>>>>->>-->>--->>>---->>>>>>->>>>>:
#=GC RF                        GCAAcCUgAaGCUggCgccCggcaaCaccgguGuugucCggcucc.UGCuggGcaucuccuggacgUGGUUCuUcGgCgCGGUgUUCCuGuCgcaGUUCCCuacguUCGCcaaggaggugCuG
//
