INFERNAL1/a [1.1.5 | Sep 2023] NAME Scr2736 ACC RF02831 DESC Streptomyces RNA 2736 STATES 201 NODES 52 CLEN 64 W 80 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 21:27:04 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02831/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 1.332031 CKSUM 273278875 NULL 0.000 0.000 0.000 0.000 GA 43.00 TC 43.10 NC 42.90 EFP7GF -8.0439 0.71921 ECMLC 0.61264 -8.04904 2.12203 1600000 610025 0.001967 ECMGC 0.39476 -15.63562 -1.66226 1600000 99463 0.004022 ECMLI 0.52954 -6.46921 3.92106 1600000 294227 0.004078 ECMGI 0.40546 -11.20680 1.55379 1600000 70645 0.005662 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 80 100 -6.620 -7.865 -0.096 -4.319 IL 1 1 2 1 4 1 21 82 101 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 22 82 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 65 - C - - MR 3 2 3 5 3 1 22 80 100 -8.125 -0.022 -6.443 -1.163 1.422 -1.960 -0.697 D 4 2 3 5 3 0 17 79 98 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 21 81 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 64 - G - - MR 6 5 3 8 5 1 21 79 99 -6.880 -0.045 -6.696 -6.908 -7.799 -1.055 -2.184 1.566 -1.568 D 7 5 3 8 5 0 17 78 98 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 20 79 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 63 C G - - MP 9 8 3 13 6 2 20 78 98 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -4.066 -3.923 -3.834 -0.206 -2.669 -4.307 3.367 -3.428 -3.871 0.119 -4.179 -1.866 0.888 -4.165 -0.368 -2.729 ML 10 8 3 13 6 1 17 77 97 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 17 77 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 14 74 94 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 19 78 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 19 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 62 G C - - MP 15 14 6 19 4 2 18 76 96 -6.620 -7.865 -0.096 -4.319 -4.264 -2.869 -4.331 0.508 -4.559 -4.497 -0.039 -4.530 -3.998 3.499 -4.372 -0.556 -0.439 -4.150 -2.053 -3.216 ML 16 14 6 19 4 1 16 75 95 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 4 1 16 75 95 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 18 14 6 19 4 0 14 73 93 -12.737 -14.007 -2.036 -0.404 IL 19 19 5 19 4 1 17 76 95 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 20 20 6 20 3 1 17 76 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 61 - U - - MR 21 20 6 23 3 1 17 74 94 -8.125 -0.022 -6.443 -0.578 -0.134 -1.310 1.011 D 22 20 6 23 3 0 13 72 92 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 16 75 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 60 - G - - MR 24 23 3 26 3 1 16 73 93 -8.125 -0.022 -6.443 -1.055 -2.184 1.566 -1.568 D 25 23 3 26 3 0 12 71 91 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 16 74 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 59 - C - - MR 27 26 3 29 3 1 15 72 92 -8.125 -0.022 -6.443 -1.163 1.422 -1.960 -0.697 D 28 26 3 29 3 0 12 70 90 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 15 73 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 58 - U - - MR 30 29 3 32 3 1 14 71 91 -3.352 -0.167 -6.443 -0.579 -0.137 -1.310 1.013 D 31 29 3 32 3 0 11 69 89 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 14 71 91 -2.262 -0.420 -4.500 0.000 0.000 0.000 0.000 [ MATR 9 ] - 56 - g - - MR 33 32 3 35 3 1 13 70 90 -8.125 -0.022 -6.443 -0.259 -0.483 0.755 -0.394 D 34 32 3 35 3 0 11 68 88 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 13 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 55 - G - - MR 36 35 3 38 3 1 12 69 89 -8.125 -0.022 -6.443 -1.055 -2.184 1.566 -1.568 D 37 35 3 38 3 0 10 67 87 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 12 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 54 - U - - MR 39 38 3 41 2 1 11 68 88 -8.055 -0.005 -1.045 -1.122 -1.751 1.464 D 40 38 3 41 2 0 10 67 87 -4.432 -0.068 IR 41 41 3 41 2 1 11 69 89 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 12 ] - - - - - - B 42 41 3 43 150 0 10 67 87 [ BEGL 13 ] - - - - - - S 43 42 1 44 4 0 0 50 69 -0.049 -6.704 -6.112 -6.752 [ MATP 14 ] 3 37 C G - - MP 44 43 1 48 6 2 2 50 69 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -4.066 -3.923 -3.834 -0.206 -2.669 -4.307 3.367 -3.428 -3.871 0.119 -4.179 -1.866 0.888 -4.165 -0.368 -2.729 ML 45 43 1 48 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 46 43 1 48 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 47 43 1 48 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 48 48 5 48 6 1 1 49 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 49 49 6 49 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 4 36 C G - - MP 50 49 6 54 6 2 2 48 67 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -4.066 -3.923 -3.834 -0.206 -2.669 -4.307 3.367 -3.428 -3.871 0.119 -4.179 -1.866 0.888 -4.165 -0.368 -2.729 ML 51 49 6 54 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 52 49 6 54 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 53 49 6 54 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 54 54 5 54 6 1 1 47 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 55 55 6 55 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 5 35 C G - - MP 56 55 6 60 6 2 2 46 65 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -4.066 -3.923 -3.834 -0.206 -2.669 -4.307 3.367 -3.428 -3.871 0.119 -4.179 -1.866 0.888 -4.165 -0.368 -2.729 ML 57 55 6 60 6 1 1 44 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 58 55 6 60 6 1 1 44 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 59 55 6 60 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 60 60 5 60 6 1 1 45 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 61 61 6 61 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 6 34 G C - - MP 62 61 6 66 6 2 2 44 63 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -4.264 -2.869 -4.331 0.508 -4.559 -4.497 -0.039 -4.530 -3.998 3.499 -4.372 -0.556 -0.439 -4.150 -2.053 -3.216 ML 63 61 6 66 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 64 61 6 66 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 65 61 6 66 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 66 66 5 66 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 7 33 G C - - MP 68 67 6 72 4 2 2 42 61 -6.680 -6.887 -0.064 -5.301 -4.264 -2.869 -4.331 0.508 -4.559 -4.497 -0.039 -4.530 -3.998 3.499 -4.372 -0.556 -0.439 -4.150 -2.053 -3.216 ML 69 67 6 72 4 1 1 42 62 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 4 1 1 42 61 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 71 67 6 72 4 0 0 41 60 -4.568 -4.250 -2.265 -0.520 IL 72 72 5 72 4 1 1 44 63 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 73 73 6 73 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 8 - C - - - ML 74 73 6 76 3 1 1 39 58 -8.125 -0.022 -6.443 -1.163 1.422 -1.960 -0.697 D 75 73 6 76 3 0 0 38 57 -5.620 -0.734 -1.403 IL 76 76 3 76 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 32 - A - - MR 77 76 3 79 3 1 1 38 57 -8.125 -0.022 -6.443 1.588 -1.881 -1.562 -1.379 D 78 76 3 79 3 0 0 36 55 -6.390 -1.568 -0.620 IR 79 79 3 79 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 31 - c - - MR 80 79 3 82 5 1 1 37 56 -6.880 -0.045 -6.696 -6.908 -7.799 -0.614 0.826 -1.390 0.254 D 81 79 3 82 5 0 0 36 55 -5.352 -0.707 -2.978 -4.409 -2.404 IR 82 82 3 82 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 9 30 C G - - MP 83 82 3 87 6 2 2 36 55 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -4.066 -3.923 -3.834 -0.206 -2.669 -4.307 3.367 -3.428 -3.871 0.119 -4.179 -1.866 0.888 -4.165 -0.368 -2.729 ML 84 82 3 87 6 1 1 35 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 85 82 3 87 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 86 82 3 87 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 87 87 5 87 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 88 88 6 88 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 10 29 G C - - MP 89 88 6 93 6 2 2 34 53 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -4.264 -2.869 -4.331 0.508 -4.559 -4.497 -0.039 -4.530 -3.998 3.499 -4.372 -0.556 -0.439 -4.150 -2.053 -3.216 ML 90 88 6 93 6 1 1 33 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 91 88 6 93 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 6 93 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 93 93 5 93 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 11 28 G C - - MP 95 94 6 99 6 2 2 32 51 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -4.264 -2.869 -4.331 0.508 -4.559 -4.497 -0.039 -4.530 -3.998 3.499 -4.372 -0.556 -0.439 -4.150 -2.053 -3.216 ML 96 94 6 99 6 1 1 31 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 97 94 6 99 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 98 94 6 99 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 99 99 5 99 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 100 100 6 100 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 12 27 A U - - MP 101 100 6 105 6 2 2 30 49 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -3.418 -2.552 -3.459 3.016 -3.615 -4.651 0.664 -3.521 -3.371 1.486 -3.899 -0.096 0.243 -3.899 -1.280 -2.319 ML 102 100 6 105 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 103 100 6 105 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 104 100 6 105 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 105 105 5 105 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 106 106 6 106 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 13 26 U A - - MP 107 106 6 111 4 2 2 28 47 -6.620 -7.865 -0.096 -4.319 -3.716 -3.518 -3.603 0.148 -2.655 -4.209 1.660 -3.314 -3.615 0.490 -4.010 -1.430 3.039 -3.882 -0.343 -2.480 ML 108 106 6 111 4 1 1 27 46 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 109 106 6 111 4 1 1 27 46 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 110 106 6 111 4 0 0 25 44 -12.737 -14.007 -2.036 -0.404 IL 111 111 5 111 4 1 1 27 46 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 112 112 6 112 3 1 1 28 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 25 - A - - MR 113 112 6 115 5 1 1 26 45 -6.880 -0.045 -6.696 -6.908 -7.799 1.588 -1.881 -1.562 -1.379 D 114 112 6 115 5 0 0 25 44 -5.352 -0.707 -2.978 -4.409 -2.404 IR 115 115 3 115 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 14 24 C G - - MP 116 115 3 120 6 2 2 25 44 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -4.066 -3.923 -3.834 -0.206 -2.669 -4.307 3.367 -3.428 -3.871 0.119 -4.179 -1.866 0.888 -4.165 -0.368 -2.729 ML 117 115 3 120 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 3 120 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 3 120 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 15 23 C G - - MP 122 121 6 126 6 2 2 23 42 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -4.066 -3.923 -3.834 -0.206 -2.669 -4.307 3.367 -3.428 -3.871 0.119 -4.179 -1.866 0.888 -4.165 -0.368 -2.729 ML 123 121 6 126 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 16 22 C G - - MP 128 127 6 132 4 2 2 21 40 -6.680 -6.887 -0.064 -5.301 -4.066 -3.923 -3.834 -0.206 -2.669 -4.307 3.367 -3.428 -3.871 0.119 -4.179 -1.866 0.888 -4.165 -0.368 -2.729 ML 129 127 6 132 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 131 127 6 132 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 132 132 5 132 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 133 133 6 133 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 17 - G - - - ML 134 133 6 136 3 1 1 18 36 -7.717 -0.024 -6.371 -1.055 -2.184 1.566 -1.568 D 135 133 6 136 3 0 0 17 36 -6.174 -1.687 -0.566 IL 136 136 3 136 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 18 - U - - - ML 137 136 3 139 3 1 1 16 35 -7.717 -0.024 -6.371 -1.045 -1.122 -1.751 1.464 D 138 136 3 139 3 0 0 16 34 -6.174 -1.687 -0.566 IL 139 139 3 139 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 19 - G - - - ML 140 139 3 142 3 1 1 15 33 -7.717 -0.024 -6.371 -1.055 -2.184 1.566 -1.568 D 141 139 3 142 3 0 0 15 33 -6.174 -1.687 -0.566 IL 142 142 3 142 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 20 - G - - - ML 143 142 3 145 3 1 1 13 32 -7.717 -0.024 -6.371 -1.055 -2.184 1.566 -1.568 D 144 142 3 145 3 0 0 13 32 -6.174 -1.687 -0.566 IL 145 145 3 145 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 21 - G - - - ML 146 145 3 148 2 1 1 1 1 * 0.000 -1.055 -2.184 1.566 -1.568 D 147 145 3 148 2 0 0 0 0 * 0.000 IL 148 148 3 148 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 36 ] - - - - - - E 149 148 3 -1 0 0 0 0 0 [ BEGR 37 ] - - - - - - S 150 42 1 151 3 0 0 30 50 -7.717 -0.024 -6.371 IL 151 151 2 151 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - A - - - ML 152 151 2 154 3 1 1 30 49 -7.717 -0.024 -6.371 1.588 -1.881 -1.562 -1.379 D 153 151 2 154 3 0 0 29 48 -6.174 -1.687 -0.566 IL 154 154 3 154 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - C - - - ML 155 154 3 157 3 1 1 29 48 -7.717 -0.189 -3.082 -1.163 1.422 -1.960 -0.697 D 156 154 3 157 3 0 0 28 47 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - - - ML 158 157 3 160 3 1 1 28 47 -7.555 -0.027 -6.209 1.471 -1.575 -1.286 -1.050 D 159 157 3 160 3 0 0 27 46 -7.043 -0.684 -1.434 IL 160 160 3 160 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - U - - - ML 161 160 3 163 5 1 1 27 46 -6.880 -0.045 -6.696 -6.908 -7.799 -1.045 -1.122 -1.751 1.464 D 162 160 3 163 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 163 163 3 163 5 1 1 27 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 42 53 G C - - MP 164 163 3 168 6 2 2 26 45 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -4.264 -2.869 -4.331 0.508 -4.559 -4.497 -0.039 -4.530 -3.998 3.499 -4.372 -0.556 -0.439 -4.150 -2.053 -3.216 ML 165 163 3 168 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 3 168 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 3 168 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 43 52 G C - - MP 170 169 6 174 6 2 2 24 43 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -4.264 -2.869 -4.331 0.508 -4.559 -4.497 -0.039 -4.530 -3.998 3.499 -4.372 -0.556 -0.439 -4.150 -2.053 -3.216 ML 171 169 6 174 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 173 169 6 174 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 174 174 5 174 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 175 175 6 175 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 44 51 G C - - MP 176 175 6 180 4 2 2 22 41 -6.680 -6.887 -0.064 -5.301 -4.264 -2.869 -4.331 0.508 -4.559 -4.497 -0.039 -4.530 -3.998 3.499 -4.372 -0.556 -0.439 -4.150 -2.053 -3.216 ML 177 175 6 180 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 178 175 6 180 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 179 175 6 180 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 180 180 5 180 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 181 181 6 181 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - A - - - ML 182 181 6 184 3 1 1 19 38 -7.717 -0.024 -6.371 1.588 -1.881 -1.562 -1.379 D 183 181 6 184 3 0 0 18 37 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - A - - - ML 185 184 3 187 3 1 1 18 36 -7.717 -0.024 -6.371 1.588 -1.881 -1.562 -1.379 D 186 184 3 187 3 0 0 17 36 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - G - - - ML 188 187 3 190 3 1 1 16 35 -7.717 -0.024 -6.371 -1.055 -2.184 1.566 -1.568 D 189 187 3 190 3 0 0 16 34 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 48 - G - - - ML 191 190 3 193 3 1 1 15 33 -7.717 -0.024 -6.371 -1.055 -2.184 1.566 -1.568 D 192 190 3 193 3 0 0 15 33 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - C - - - ML 194 193 3 196 3 1 1 13 32 -7.717 -0.024 -6.371 -1.163 1.422 -1.960 -0.697 D 195 193 3 196 3 0 0 13 32 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - G - - - ML 197 196 3 199 2 1 1 1 1 * 0.000 -1.055 -2.184 1.566 -1.568 D 198 196 3 199 2 0 0 0 0 * 0.000 IL 199 199 3 199 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 51 ] - - - - - - E 200 199 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Scr2736 ACC RF02831 DESC Streptomyces RNA 2736 LENG 64 MAXL 150 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 9 21:27:04 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02831/CM NSEQ 4 EFFN 1.878906 CKSUM 273278875 STATS LOCAL MSV -8.1266 0.71921 STATS LOCAL VITERBI -8.9849 0.71921 STATS LOCAL FORWARD -3.3446 0.71921 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.74985 1.20869 1.01261 1.80581 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 0.00000 * 1 2.94777 0.30769 2.69896 1.93016 1 C - - ( 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 2 2.43225 2.99108 0.21229 2.93376 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 3 2.97121 0.30437 2.70917 1.93394 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 4 2.96709 0.30495 2.70738 1.93328 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 5 2.96444 0.30532 2.70623 1.93286 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 6 2.43616 2.99519 0.21122 2.93965 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 7 2.43547 2.99447 0.21141 2.93861 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 8 2.56078 0.26937 3.13076 2.16100 8 C - - - 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 9 2.95582 0.30654 2.70248 1.93147 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 10 2.43467 2.99363 0.21163 2.93741 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 11 2.43529 2.99428 0.21146 2.93834 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 12 0.45290 2.49741 1.63610 2.43974 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 13 2.71965 1.72175 2.43983 0.40321 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 14 2.93307 0.30982 2.69250 1.92776 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 15 2.94634 0.30789 2.69834 1.92993 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 16 2.95256 0.30700 2.70106 1.93094 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 17 2.45332 3.29458 0.19824 2.86937 17 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 18 2.39144 2.39327 2.89869 0.27171 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 19 2.45332 3.29458 0.19824 2.86937 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 20 2.45332 3.29458 0.19824 2.86937 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 21 2.45332 3.29458 0.19824 2.86937 21 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 22 2.20665 2.87076 0.26501 2.71689 22 G - - > 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 23 2.20703 2.87123 0.26487 2.71748 23 G - - > 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 24 2.20751 2.87181 0.26470 2.71823 24 G - - > 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 25 0.20070 3.00315 2.75074 2.68336 25 A - - - 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 26 0.45838 2.61953 1.55854 2.47204 26 A - - > 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 27 2.67099 1.90361 2.31221 0.38164 27 U - - > 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 28 3.15589 0.24782 2.82730 2.13937 28 C - - > 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 29 3.15875 0.24749 2.82847 2.13993 29 C - - > 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 30 2.21061 2.87564 0.26355 2.72311 30 G - - > 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 31 1.96712 0.71183 2.52556 1.24001 31 c - - - 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 32 0.20070 3.00315 2.75074 2.68336 32 A - - - 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 33 3.14907 0.24861 2.82449 2.13806 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 34 3.14867 0.24865 2.82432 2.13798 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 35 2.20603 2.87000 0.26524 2.71591 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 36 2.20471 2.86837 0.26573 2.71384 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 37 2.20187 2.86488 0.26679 2.70938 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 38 0.20070 3.00315 2.75074 2.68336 38 A - - , 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 39 2.56078 0.26937 3.13076 2.16100 39 C - - , 1.38629 1.38629 1.38629 1.38629 0.19365 3.82745 1.86894 1.46634 0.26236 1.09861 0.40547 40 0.27251 2.73175 2.50658 2.38726 40 A - - , 1.38629 1.38629 1.38629 1.38629 0.05148 3.68529 3.68529 1.46634 0.26236 0.24853 1.51389 41 2.39144 2.39327 2.89869 0.27171 41 U - - , 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 42 2.43253 2.99138 0.21221 2.93419 42 G - - < 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 43 2.43353 2.99243 0.21194 2.93570 43 G - - < 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 44 2.43387 2.99278 0.21185 2.93620 44 G - - < 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 45 0.20070 3.00315 2.75074 2.68336 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 46 0.20070 3.00315 2.75074 2.68336 46 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 47 2.45332 3.29458 0.19824 2.86937 47 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 48 2.45332 3.29458 0.19824 2.86937 48 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 49 2.56078 0.26937 3.13076 2.16100 49 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 50 2.45332 3.29458 0.19824 2.86937 50 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 51 3.13719 0.24999 2.81957 2.13575 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 52 3.12839 0.25103 2.81590 2.13402 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 53 3.11182 0.25301 2.80895 2.13074 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 54 2.39144 2.39327 2.89869 0.27171 54 U - - , 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 55 2.45332 3.29458 0.19824 2.86937 55 G - - , 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 56 1.68262 1.74601 0.74825 1.79304 56 g - - , 1.38629 1.38629 1.38629 1.38629 0.18787 1.90038 3.82745 0.26938 1.44331 1.09861 0.40547 57 1.92491 1.48337 2.44345 0.61549 58 U - - , 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 58 2.56078 0.26937 3.13076 2.16100 59 C - - , 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 59 2.45332 3.29458 0.19824 2.86937 60 G - - , 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 60 1.92421 1.48096 2.44284 0.61678 61 U - - , 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 61 3.15576 0.24784 2.82724 2.13935 62 C - - ) 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 62 2.20952 2.87430 0.26396 2.72140 63 G - - ) 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 63 2.45332 3.29458 0.19824 2.86937 64 G - - : 1.38629 1.38629 1.38629 1.38629 0.04451 3.82745 3.82745 1.46634 0.26236 1.09861 0.40547 64 2.56078 0.26937 3.13076 2.16100 65 C - - : 1.38629 1.38629 1.38629 1.38629 0.02250 3.80545 * 1.46634 0.26236 0.00000 * //