# STOCKHOLM 1.0
#=GF ID Scr6106
#=GF AC RF02827
#=GF DE Streptomyces RNA 6106
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 52.5
#=GF NC 52.3
#=GF TC 52.5
#=GF SE Argasinska J
#=GF SS Predicted; 21521948
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 21521948
#=GF RT Deep sequencing-based identification of small non-coding RNAs in
#=GF RT Streptomyces coelicolor.
#=GF RA Vockenhuber MP, Sharma CM, Statt MG, Schmidt D, Xu Z, Dietrich S,
#=GF RA Liesegang H, Mathews DH, Suess B
#=GF RL RNA Biol. 2011;8:468-477.
#=GF CC Identified by deep sequencing of transcriptome at the end of exponential
#=GF CC growth phase. Appears smaller on northern blot than sequencing transcript.
#=GF CC This indicates processing step. Streptomyces specific. 
#=GF WK Streptomyces_coelicolor
#=GF SQ 4

HE971709.1/2496500-2496421 ACGCCGUCCCGAGCGGCGUUCGUGGCCUCGAACGGGCCUGCGA---GGGGGUGGUGCCGUGUCGGCGCAGCACCACCCCC--UCC
CP010849.1/6249277-6249361 ACGCCGUCCUGAACGGCGUUCACGGCCUUGACCGGGCCCGUGAGGCGGGGGUGGUGCCGUGUCGGCGCAGCACCACCCCCGCAGC
CP013743.1/2667557-2667473 ACGCCGUCCCGAGCGGCGUUCGCGGCCUCGACCGGGCCAGUGCGGCGGGGGUGGUGCCGUGUCGGCGCAGCACCACCCCCGCCUU
AL645882.2/6706584-6706667 ACGCCGUCCCGAGCGGCGUACGCGGCCU-GAACGGGCCCGUGUGGCGGGGGUGGUGCCGUGUCGGCGCAGCACCACCCCCGCGCC
#=GC SS_cons               <<<<<<<_____>>>>>>><<<<<<<<<_____>>>->>>>>>:<<<<<<<<<<<<<-<<<____>>>->>>>>>>>>>>>>:::
#=GC RF                    aCGCCGcCCcGAgCGGCGugCgcgGCCcuGAaCgGGCCcgcGcGGcGGGGGuGGuGCCGcGUCGGCgCAGCaCCaCCCCCgCuuc
//
