# STOCKHOLM 1.0
#=GF ID LPR17
#=GF AC RF02825
#=GF DE Legionella RNA 17
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 98.0
#=GF NC 73.7
#=GF TC 101.6
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 21408607
#=GF RT Sequencing illustrates the transcriptional response of Legionella
#=GF RT pneumophila during infection and identifies seventy novel small non-coding
#=GF RT RNAs.
#=GF RA Weissenmayer BA, Prendergast JG, Lohan AJ, Loftus BJ
#=GF RL PLoS One. 2011;6:e17570.
#=GF CC Identified by strand specific sequencing of the transcriptional response
#=GF CC during broth growth and during infection inside the host. 
#=GF WK Legionella
#=GF SQ 2

AE017354.1/539616-539866   GAAAACGCGGUCAAAGGCAGCAUCAGAGUUAGGGCAUAAACCAAUGCCAAAGUACUGGAAAAAAGUUUCUUAAUAACCAUAGCGAUCUCCUCAGAUGCAAGGCCAUGAAAUUAGCCACCUG--CGUAUUUUUUUA---UGCAAUUUAAAUGCCAGCGGCUAAGC-UUUAAGACAACCAGUCUAACGGAUUGACCGCUUUU
JNCF01000027.1/24159-24414 GAGAAUGUUGUUAAAGGCAGCAUCAGCGUUAGGGCAUAAAUUAAUGCUAAAGUACUGGAAAACAAUCUUUUAAUAACCAUAGCGAUCUCCUCGGAUCCAAGGCCAUGAA-UCAGCCACUUUUUUGUAUUUUUUUAUAAUGCAAUUUAAGUGCCAGCGGCUAAACUUUUAAGACAACCACUCUAACGGAUUAACCGCUUUU
#=GC SS_cons               [[[[[-[[[[[[[[,(((-(((((-(((,,,,<<<<<______>>>>>,<<<-<<<_______>>>-->>>,,,,,,,,,,,,,,,,,,)))-)))))---))),<<<<-<<<<<<--<<<---<<<<<<________________>>>>>>>>>->>>>>>--->>>><<<<_____>>>>,,,,,,]]]]]]]]]]]]
#=GC RF                    GaaaauGcgGucaaAGGCAGcauCAGaGUUAGgGCauAAAuuAauGCcAaagUacuGGAAAAaaguuUcuuAAUAACCAUAGCGAUCUCCuCaGaugCAAGGCCAugaaAuuaGCCACcuguuuGuauuuUUUUAuAAUGCAAUUUaaaugCcagCGGCuaaaCuuuuaaGacAACCAguCuAACGGAuugaCcgCuuuu

AE017354.1/539616-539866   CCUCUUUGUCUUAUUUCAAAGUAUAGACCGUUUUGCUUAAUUCCACCGGUAUGGCCU
JNCF01000027.1/24159-24414 CCUUUUUGUCUUAUCUCAAAGUAUAGACCGUUUUGCUUGAUUCCACCGCUGUGACCG
#=GC SS_cons               ]::<<<<<________>>>>>:::::<<<<---<<________>>->>>>:::::::
#=GC RF                    CCUcuuuGUCUUAUuUCaaagUAUAGacCGUUUuGCUUaAUUCCaCCGguaUGaCCu
//
