# STOCKHOLM 1.0
#=GF ID V_AS9
#=GF AC RF02820
#=GF DE Vibrio RNA AS9
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 50.0
#=GF NC 49.9
#=GF TC 50.0
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold
#=GF TP Gene; antisense;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0001263; ncRNA_gene;
#=GF DR SO; 0000644; antisense_RNA;
#=GF RN [1]
#=GF RM 19223322
#=GF RT Experimental discovery of sRNAs in Vibrio cholerae by direct cloning,
#=GF RT 5S/tRNA depletion and parallel sequencing.
#=GF RA Liu JM, Livny J, Lawrence MS, Kimball MD, Waldor MK, Camilli A
#=GF RL Nucleic Acids Res. 2009;37:e46.
#=GF CC Identified by direct cloning an parallel sequencing experiments with
#=GF CC 5S/tRNA depletion. Confirmed by Northern blot.
#=GF WK Vibrio
#=GF SQ 3

CP007653.1/2399565-2399668 ACGGCGAC-AACGCUCUUUCGUGAGCGUUAAACAGAUGAGUCCGCGACCAUGGGUUGCCAUAAAAUUGAUCGCUGCUGGCG-UAAUGUGCUCAGCCGCCAUGAUCA
CP002377.1/1108136-1108036 AUGGCAACGCGCUUUG----GUCAUGGUGAGACAAAUCAAACCACGACCAUGAGUCGCCAUAAAGUUAAUCGCUGCCGGCG-UAAUAUGCUCGGCCGCCAUGAUCA
CP009888.1/2943594-2943697 CUGCUGAC-AACGCUCUUGUGUUAGUGUUAAACAAAUCAAACCGCGACCAUGCGUCGCCAUAAAAUUAAUUGCAUCUG-CACUGAUAUGCUCAGAUGCCAUAAUUA
#=GC SS_cons               ::((((((.<<<<<<<______>>>>>>>,,,,,,<<<-<<<___>>>>>>,,)))))):::::::<<<<<<<-<<<<<<<._____>>>->>>>->>--->>>>>
#=GC RF                    auGgcgaC.caCgcucUUuuGUgagcGugAaACAaaugAgcCCgCGgccauGaGucgcCAUAAAaUugaucGCugCcGGCg.UaAUacGCUCgGccGCCAUgauca
//
