# STOCKHOLM 1.0
#=GF ID V_AS7
#=GF AC RF02819
#=GF DE Vibrio RNA AS7
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 90.0
#=GF NC 89.8
#=GF TC 90.1
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold
#=GF TP Gene; antisense;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0001263; ncRNA_gene;
#=GF DR SO; 0000644; antisense_RNA;
#=GF RN [1]
#=GF RM 19223322
#=GF RT Experimental discovery of sRNAs in Vibrio cholerae by direct cloning,
#=GF RT 5S/tRNA depletion and parallel sequencing.
#=GF RA Liu JM, Livny J, Lawrence MS, Kimball MD, Waldor MK, Camilli A
#=GF RL Nucleic Acids Res. 2009;37:e46.
#=GF CC Identified by direct cloning an parallel sequencing experiments with
#=GF CC 5S/tRNA depletion. Confirmed by Northern blot.
#=GF WK Vibrio
#=GF SQ 7

CP007654.1/556735-556567   GGUGUUUGCAGCAGCAAAUUGCUGCGUUCUUUGAUGUCACCACCGAUGUGAUAUGGCAAGCCGCAGUUGGCAAAGGAAACGUAGGGGCCACGCUCGAACAUGAUGAUUUCAGCGUCUUCGCUGAGUCGACGCGCACGAGCCGCCGCCGAGGCUCCACCUGCAACACCAC
CP002285.1/115658-115490   GGUGUUUGUAGCAGCAAAUUGCUGCGCUCUUUGAUGUCACCGCCAAUGUGAUAUGGCAAGCCACAGUUAGCAAAUGAAACGAAGGGGCCCCGCUCAAACAUAAUGAUUUCAGCUUCUUCGCUGAGUCGACGAGCACGAGCCGCUGCGGAUGCACCACCCGCGACACCAC
BA000032.2/982310-982142   GGCGUUUGUAGUAGUAACUUACUGCGUUCUUGGAUAUCGCCGCCGAUGUGAUAAGGCAAGCCACAGUUGGCAAAUGAAACAAACGGGCCACGUUCAAACAUGAUGAUUUCGGCAUCUUCGCUCAGACGACGAGCACGCGCCGCCGCAGAUGCACCACCUGCAACACCAC
CP002378.1/289025-288857   GGCGUUUGCAGUAGCAAAUUGGCUCGUUCUUUGAUGUCACCACCGAUGUGAUAGGGCAAGCCGCAGUUGGCAAACGAGACGAAAGGGCCCCGUUCAAACAUAAUGAUUUGCGCAUCUUCGCUCAAACGACGCGCACGCGCUGCCGCAGAAGCCCCGCCGGCAACACCGC
CP005974.1/1774859-1775027 GGAGUCUGUAGCAGCAAUUUGCUGCGCUCGGUGAUGUCGCCUCCGAUAUGGUAGGGAAGGCCGCAGUUGGCAAACGAGACAAAUUCACCGCGCUCGAACAUGAUGAUUUCAGCAUCUUCGCUCAAGCGGCGGGCACGUGCGGCAGCGGAGGCUCCGCCUGCCACACCGC
CP000606.1/830490-830322   GGCGUCUGCAGUACUAAGGCGCUGCGCUGAGCGAUCUCACCACUGAUAUGAUAAGGCAGGCCACAGUUGGCAAAGGAGACAUAUUCGCCGCGCUCAAACAUAAUGAUUUCAGCAGUUUCGCUGAGUCUACGCGCCCUUGCCGCCGCCGAUGCGCCGCCCGCGACGCCAC
BA000038.2/991802-991634   GGUGUUUGCAGAAGUAGCUUGCUGCGCUCUUUGAUAUCGCCACCAAUGUGGUAAGGCAAGCCGCAAUUCGCAAAAGAGACAAAAGGACCACGUUCAAACAUGAUUAUCUGUGCAUCUUCACUCAAACGACGUGCUCUAGCUGCUGCUGAAGCACCACCUGCGACGCCAC
#=GC SS_cons               ((((((-(((<<<<<<___>>>>>>,,,,,,<-<<<<<<<_______>>>>>>>->,,,<<<______>>>,,,<<<--<---<<<<<---<<<<<--<-<<-<<<<<-<<<<<____>>>>>>>>>>->>->-->>>>>->>>->>-->-->>>,,,)))))))))::
#=GC RF                    GGcGucUGcaGcagcaAauugcugCGuUcuucGcuguCacCaCcgAUguGacagGgcAaGCCgCAGUUGGCAAAgGagAcaaAcggGCCaCGcucgAACAugAcGauuUcaGCgucUUcGCugaauCgAcgaGCacgagCuGCcGcgGAgGCuCcaCCugCgaCgCCaC
//
