INFERNAL1/a [1.1.5 | Sep 2023] NAME PyrR210 ACC RF02808 DESC Pyrobaculum sRNA 210 STATES 181 NODES 47 CLEN 59 W 74 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 04:51:00 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02808/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 6 EFFN 2.598633 CKSUM 636403909 NULL 0.000 0.000 0.000 0.000 GA 59.00 TC 59.60 NC 35.80 EFP7GF -9.7442 0.71919 ECMLC 0.60519 -9.35902 1.00073 1600000 633952 0.001893 ECMGC 0.38303 -18.61833 -3.45193 1600000 133349 0.003000 ECMLI 0.54099 -8.95331 1.81879 1600000 407452 0.002945 ECMGI 0.40368 -14.30356 -0.85810 1600000 91049 0.004393 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 74 93 -7.096 -8.342 -0.069 -4.795 IL 1 1 2 1 4 1 14 76 95 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 16 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 62 - A - - MR 3 2 3 5 3 1 15 74 93 -8.575 -0.016 -6.893 1.804 -2.847 -2.432 -2.438 D 4 2 3 5 3 0 10 73 92 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 15 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 61 - C - - MR 6 5 3 8 3 1 15 73 92 -8.575 -0.016 -6.893 -2.317 1.749 -3.148 -1.617 D 7 5 3 8 3 0 9 72 91 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 14 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 60 - A - - MR 9 8 3 11 3 1 14 72 91 -8.575 -0.016 -6.893 1.804 -2.847 -2.432 -2.438 D 10 8 3 11 3 0 8 71 90 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 13 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 59 - U - - MR 12 11 3 14 3 1 13 71 90 -8.575 -0.016 -6.893 -1.929 -1.850 -2.682 1.724 D 13 11 3 14 3 0 7 70 88 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 12 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 58 - c - - MR 15 14 3 17 3 1 12 70 89 -8.575 -0.016 -6.893 -0.547 0.670 -0.720 0.160 D 16 14 3 17 3 0 6 69 87 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 11 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 57 - U - - MR 18 17 3 20 3 1 11 69 88 -2.536 -0.288 -6.893 -1.081 -0.321 -1.838 1.291 D 19 17 3 20 3 0 5 67 86 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 11 69 88 -2.644 -0.311 -4.883 0.000 0.000 0.000 0.000 [ MATR 7 ] - 55 - G - - MR 21 20 3 23 3 1 10 68 87 -8.575 -0.016 -6.893 -2.073 -3.363 1.814 -2.750 D 22 20 3 23 3 0 4 66 85 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 9 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 54 - A - - MR 24 23 3 26 3 1 10 67 86 -8.575 -0.016 -6.893 1.804 -2.847 -2.432 -2.438 D 25 23 3 26 3 0 4 65 84 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 8 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 53 - G - - MR 27 26 3 29 3 1 9 66 85 -8.575 -0.016 -6.893 -2.073 -3.363 1.814 -2.750 D 28 26 3 29 3 0 4 64 83 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 7 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 52 - C - - MR 30 29 3 32 3 1 8 65 84 -8.575 -0.016 -6.893 -2.317 1.749 -3.148 -1.617 D 31 29 3 32 3 0 3 63 82 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 7 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 51 - C - - MR 33 32 3 35 3 1 8 64 83 -8.575 -0.016 -6.893 -2.317 1.749 -3.148 -1.617 D 34 32 3 35 3 0 2 62 81 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 6 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 50 - G - - MR 36 35 3 38 3 1 7 63 82 -8.575 -0.016 -6.893 -2.073 -3.363 1.814 -2.750 D 37 35 3 38 3 0 2 61 80 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 5 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 49 - G - - MR 39 38 3 41 3 1 6 62 81 -8.575 -0.016 -6.893 -2.073 -3.363 1.814 -2.750 D 40 38 3 41 3 0 1 60 79 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 5 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 48 - C - - MR 42 41 3 44 3 1 6 61 80 -8.575 -0.016 -6.893 -2.317 1.749 -3.148 -1.617 D 43 41 3 44 3 0 1 59 78 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 5 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 47 - G - - MR 45 44 3 47 3 1 5 60 79 -8.575 -0.016 -6.893 -2.073 -3.363 1.814 -2.750 D 46 44 3 47 3 0 0 58 77 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 4 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 46 - C - - MR 48 47 3 50 3 1 5 59 78 -8.575 -0.016 -6.893 -2.317 1.749 -3.148 -1.617 D 49 47 3 50 3 0 0 57 76 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 3 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 45 - C - - MR 51 50 3 53 3 1 5 58 77 -8.575 -0.016 -6.893 -2.317 1.749 -3.148 -1.617 D 52 50 3 53 3 0 0 56 75 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 3 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 44 - C - - MR 54 53 3 56 5 1 5 57 76 -7.300 -0.034 -7.116 -7.328 -8.219 -2.317 1.749 -3.148 -1.617 D 55 53 3 56 5 0 0 56 74 -5.352 -0.707 -2.978 -4.409 -2.404 IR 56 56 3 56 5 1 2 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 1 43 u g - - MP 57 56 3 61 6 2 6 56 75 -9.208 -9.148 -0.020 -7.924 -8.204 -8.599 -4.212 -4.249 -3.941 -0.541 -2.682 -4.365 2.498 -3.471 -3.984 -0.372 -4.288 -2.345 0.819 -4.282 2.623 -2.847 ML 58 56 3 61 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 3 61 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 3 61 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 56 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 2 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 2 42 G C - - MP 63 62 6 67 6 2 5 54 73 -9.208 -9.148 -0.020 -7.924 -8.204 -8.599 -5.202 -3.317 -5.359 -0.116 -5.878 -4.868 -1.127 -5.624 -4.615 3.731 -4.922 -1.037 -1.501 -4.766 -3.192 -4.229 ML 64 62 6 67 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 54 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 3 41 G C - - MP 69 68 6 73 6 2 5 52 71 -9.208 -9.148 -0.020 -7.924 -8.204 -8.599 -5.202 -3.317 -5.359 -0.116 -5.878 -4.868 -1.127 -5.624 -4.615 3.731 -4.922 -1.037 -1.501 -4.766 -3.192 -4.229 ML 70 68 6 73 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 52 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 4 40 G C - - MP 75 74 6 79 6 2 4 50 69 -9.208 -9.148 -0.020 -7.924 -8.204 -8.599 -5.202 -3.317 -5.359 -0.116 -5.878 -4.868 -1.127 -5.624 -4.615 3.731 -4.922 -1.037 -1.501 -4.766 -3.192 -4.229 ML 76 74 6 79 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 50 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 5 39 C G - - MP 81 80 6 85 6 2 4 48 67 -9.208 -9.148 -0.020 -7.924 -8.204 -8.599 -4.128 -4.076 -3.915 -0.259 -2.698 -4.409 3.166 -3.459 -3.927 -0.046 -4.271 -2.026 1.766 -4.223 -0.358 -2.765 ML 82 80 6 85 6 1 1 47 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 48 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 6 38 u a - - MP 87 86 6 91 4 2 2 46 65 -7.096 -8.342 -0.069 -4.795 -3.595 -3.565 -3.544 0.154 -2.589 -4.187 2.378 -3.263 -3.543 0.343 -3.977 -1.573 2.410 -3.777 0.837 -2.438 ML 88 86 6 91 4 1 1 45 64 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 4 1 1 45 64 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 90 86 6 91 4 0 0 43 62 -12.737 -14.007 -2.036 -0.404 IL 91 91 5 91 4 1 1 45 64 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 92 92 6 92 3 1 1 46 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 37 - A - - MR 93 92 6 95 5 1 1 44 63 -7.300 -0.034 -7.116 -7.328 -8.219 1.804 -2.847 -2.432 -2.438 D 94 92 6 95 5 0 0 43 61 -5.352 -0.707 -2.978 -4.409 -2.404 IR 95 95 3 95 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 7 36 c g - - MP 96 95 3 100 6 2 2 43 62 -9.208 -9.148 -0.020 -7.924 -8.204 -8.599 -1.579 -0.703 -2.091 1.000 -2.087 -0.996 1.312 -2.167 -0.086 0.985 -1.861 1.207 1.009 -0.897 -0.225 -1.111 ML 97 95 3 100 6 1 1 42 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 3 100 6 1 1 42 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 3 100 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 43 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 8 35 G A - - MP 102 101 6 106 6 2 2 41 60 -9.208 -9.148 -0.020 -7.924 -8.204 -8.599 -4.121 -3.273 -4.063 0.367 -3.562 -5.107 0.696 -3.820 3.204 0.362 -4.352 -0.757 -0.068 -4.737 -1.260 -2.860 ML 103 101 6 106 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 39 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 9 34 A G - - MP 108 107 6 112 4 2 2 39 58 -7.199 -7.406 -0.045 -5.820 -4.128 -3.410 3.190 0.227 -3.344 -4.911 0.901 -3.742 -3.903 0.151 -4.334 -0.954 0.101 -4.621 -1.055 -2.853 ML 109 107 6 112 4 1 1 40 59 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 4 1 1 39 58 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 111 107 6 112 4 0 0 38 57 -4.568 -4.250 -2.265 -0.520 IL 112 112 5 112 4 1 1 41 60 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 113 113 6 113 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 10 - C - - - ML 114 113 6 116 3 1 1 36 54 -8.199 -0.017 -6.853 -2.317 1.749 -3.148 -1.617 D 115 113 6 116 3 0 0 35 54 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 11 - a - - - ML 117 116 3 119 3 1 1 35 53 -8.575 -0.016 -6.893 0.557 -0.464 -0.339 0.020 D 118 116 3 119 3 0 0 34 52 -5.620 -0.734 -1.403 IL 119 119 3 119 3 1 1 36 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 33 - U - - MR 120 119 3 122 3 1 1 34 52 -8.575 -0.016 -6.893 -1.929 -1.850 -2.682 1.724 D 121 119 3 122 3 0 0 32 51 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 35 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 32 - A - - MR 123 122 3 125 3 1 1 33 51 -8.575 -0.016 -6.893 1.804 -2.847 -2.432 -2.438 D 124 122 3 125 3 0 0 31 50 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 34 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 31 - a - - MR 126 125 3 128 3 1 1 32 50 -8.575 -0.016 -6.893 0.557 -0.922 -0.321 0.264 D 127 125 3 128 3 0 0 30 48 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 33 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 30 - G - - MR 129 128 3 131 3 1 1 31 49 -2.536 -0.288 -6.893 -2.073 -3.363 1.814 -2.750 D 130 128 3 131 3 0 0 29 47 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 31 49 -2.644 -0.311 -4.883 0.000 0.000 0.000 0.000 [ MATR 35 ] - 28 - a - - MR 132 131 3 134 5 1 1 29 48 -7.300 -0.034 -7.116 -7.328 -8.219 0.566 -0.925 -0.321 0.254 D 133 131 3 134 5 0 0 28 46 -5.352 -0.707 -2.978 -4.409 -2.404 IR 134 134 3 134 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 12 27 g c - - MP 135 134 3 139 6 2 2 28 47 -9.208 -9.148 -0.020 -7.924 -8.204 -8.599 -2.962 -2.291 -3.049 1.109 -3.295 -3.846 0.746 -0.067 -3.119 2.569 -3.576 1.164 0.476 -3.139 -1.076 -2.076 ML 136 134 3 139 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 3 139 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 3 139 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 13 26 C G - - MP 141 140 6 145 6 2 2 26 45 -9.208 -9.148 -0.020 -7.924 -8.204 -8.599 -5.068 -5.018 -4.668 -1.211 -3.282 -5.011 3.684 -4.143 -4.739 -1.033 -4.939 -2.976 0.174 -5.101 -1.005 -3.563 ML 142 140 6 145 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 14 25 C G - - MP 147 146 6 151 6 2 2 24 43 -9.208 -9.148 -0.020 -7.924 -8.204 -8.599 -5.068 -5.018 -4.668 -1.211 -3.282 -5.011 3.684 -4.143 -4.739 -1.033 -4.939 -2.976 0.174 -5.101 -1.005 -3.563 ML 148 146 6 151 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 15 24 G C - - MP 153 152 6 157 6 2 2 22 41 -9.208 -9.148 -0.020 -7.924 -8.204 -8.599 -5.202 -3.317 -5.359 -0.116 -5.878 -4.868 -1.127 -5.624 -4.615 3.731 -4.922 -1.037 -1.501 -4.766 -3.192 -4.229 ML 154 152 6 157 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 19 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 16 23 c g - - MP 159 158 6 163 4 2 2 20 39 -7.199 -2.340 -1.068 -1.649 -4.093 -4.108 -3.872 -0.381 -2.666 -4.342 2.843 -3.435 -3.902 -0.206 -4.235 -2.167 0.896 -4.188 2.105 -2.767 ML 160 158 6 163 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 162 158 6 163 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 163 163 5 163 4 1 1 21 39 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 164 164 6 164 3 1 1 19 38 -2.019 -0.484 -4.719 0.000 0.000 0.000 0.000 [ MATL 41 ] 17 - g - - - ML 165 164 6 167 3 1 1 17 36 -7.719 -0.024 -6.373 -0.203 -0.107 0.443 -0.246 D 166 164 6 167 3 0 0 16 35 -8.202 -0.267 -2.593 IL 167 167 3 167 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 18 - G - - - ML 168 167 3 170 3 1 1 16 35 -8.199 -0.017 -6.853 -0.160 -2.017 1.316 -1.442 D 169 167 3 170 3 0 0 16 34 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 19 - a - - - ML 171 170 3 173 3 1 1 15 33 -8.199 -0.017 -6.853 0.291 -0.940 0.086 0.256 D 172 170 3 173 3 0 0 15 33 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 20 - u - - - ML 174 173 3 176 3 1 1 13 31 -8.199 -0.017 -6.853 -0.910 0.627 -1.717 0.695 D 175 173 3 176 3 0 0 13 32 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 21 - u - - - ML 177 176 3 179 2 1 1 1 1 * 0.000 -0.435 0.316 -0.521 0.399 D 178 176 3 179 2 0 0 0 0 * 0.000 IL 179 179 3 179 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 180 179 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME PyrR210 ACC RF02808 DESC Pyrobaculum sRNA 210 LENG 59 MAXL 138 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 04:51:00 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02808/CM NSEQ 6 EFFN 3.413086 CKSUM 636403909 STATS LOCAL MSV -7.9386 0.71919 STATS LOCAL VITERBI -8.7398 0.71919 STATS LOCAL FORWARD -3.2768 0.71919 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.63065 1.18025 1.11770 1.77217 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 0.00000 * 1 3.17590 0.99852 2.99409 0.61667 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 2 2.88489 3.69103 0.11352 3.63042 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 3 2.88439 3.69033 0.11360 3.62947 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 4 2.88365 3.68929 0.11371 3.62806 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 5 2.91475 0.49183 2.68743 1.32343 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 6 2.57899 1.06964 2.35451 0.72139 6 u - - < 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 7 1.63066 1.56598 0.99372 1.49112 7 g - - < 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 8 2.52108 2.39512 0.28620 2.55940 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 9 0.32628 2.24944 2.44935 2.44656 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 10 3.39220 0.11816 3.95532 2.83601 10 C - - - 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 11 0.98303 1.71586 1.62316 1.39134 11 a - - - 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 12 1.89410 1.78885 0.56206 2.18603 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 13 3.67345 0.14900 3.50294 2.48967 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 14 3.67417 0.14896 3.50333 2.48980 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 15 2.88278 3.68807 0.11385 3.62641 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 16 3.04821 0.72616 2.85430 0.88868 16 c - - < 1.38629 1.38629 1.38629 1.38629 0.41475 4.10209 1.13023 1.46634 0.26236 1.09861 0.40547 17 1.59929 1.44096 1.00482 1.63399 17 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04886 3.73621 3.73621 1.46634 0.26236 0.09750 2.37622 18 1.54593 2.98772 0.41163 2.60488 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 19 1.18385 2.10831 1.29856 1.20553 19 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 20 2.17516 0.89108 2.75283 0.88564 20 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 21 1.76989 1.11796 1.75025 1.11178 21 u - - _ 1.38629 1.38629 1.38629 1.38629 0.26141 1.54415 4.10209 0.14832 1.98164 1.09861 0.40547 22 2.18435 3.01398 0.25085 2.80991 23 G - - > 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 23 3.80647 0.13642 3.53582 2.57483 24 C - - > 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 24 2.77325 3.67317 0.12753 3.44591 25 G - - > 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 25 2.77559 3.67684 0.12711 3.45006 26 G - - > 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 26 2.42924 0.86851 2.13822 0.98228 27 c - - > 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 27 0.97342 2.09643 1.60952 1.20620 28 a - - - 1.38629 1.38629 1.38629 1.38629 0.26141 1.54415 4.10209 0.14832 1.98164 1.09861 0.40547 28 3.15225 4.08418 0.08941 3.65208 30 G - - - 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 29 0.98040 2.09419 1.60983 1.19816 31 a - - - 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 30 0.09534 3.69421 3.37639 3.44519 32 A - - - 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 31 3.04486 2.93709 3.57631 0.13766 33 U - - - 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 32 2.73071 2.78776 0.25487 2.32025 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 33 0.33977 2.65831 2.22525 2.20767 35 A - - > 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 34 1.54692 1.46648 1.48009 1.11248 36 u - - > 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 35 0.09534 3.69421 3.37639 3.44519 37 A - - - 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 36 0.98401 2.52514 0.79687 2.34962 38 g - - > 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 37 1.47543 2.85324 0.43910 2.67299 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 38 3.80848 0.13631 3.53679 2.57520 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 39 3.81437 0.13597 3.53962 2.57629 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 40 3.82262 0.13550 3.54358 2.57780 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 41 2.25052 3.15597 0.22405 2.94152 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 42 3.39220 0.11816 3.95532 2.83601 44 C - - : 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 43 3.39220 0.11816 3.95532 2.83601 45 C - - : 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 44 3.39220 0.11816 3.95532 2.83601 46 C - - : 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 45 3.15225 4.08418 0.08941 3.65208 47 G - - : 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 46 3.39220 0.11816 3.95532 2.83601 48 C - - : 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 47 3.15225 4.08418 0.08941 3.65208 49 G - - : 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 48 3.15225 4.08418 0.08941 3.65208 50 G - - : 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 49 3.39220 0.11816 3.95532 2.83601 51 C - - : 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 50 3.39220 0.11816 3.95532 2.83601 52 C - - : 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 51 3.15225 4.08418 0.08941 3.65208 53 G - - : 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 52 0.09534 3.69421 3.37639 3.44519 54 A - - : 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 53 3.15225 4.08418 0.08941 3.65208 55 G - - : 1.38629 1.38629 1.38629 1.38629 0.26141 1.54415 4.10209 0.14832 1.98164 1.09861 0.40547 54 2.32292 1.62959 2.85419 0.43325 57 U - - : 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 55 1.86992 0.85407 1.90997 1.30158 58 c - - : 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 56 3.04486 2.93709 3.57631 0.13766 59 U - - : 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 57 0.09534 3.69421 3.37639 3.44519 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 58 3.39220 0.11816 3.95532 2.83601 61 C - - : 1.38629 1.38629 1.38629 1.38629 0.03364 4.10209 4.10209 1.46634 0.26236 1.09861 0.40547 59 0.09534 3.69421 3.37639 3.44519 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.01696 4.08542 * 1.46634 0.26236 0.00000 * //