INFERNAL1/a [1.1.4 | Dec 2020] NAME PyrR210 ACC RF02808 DESC Pyrobaculum sRNA 210 STATES 181 NODES 47 CLEN 59 W 74 ALPH RNA RF no CONS yes MAP yes DATE Wed Oct 25 14:04:45 2017 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 6 EFFN 2.592773 CKSUM 636403909 NULL 0.000 0.000 0.000 0.000 GA 59.00 TC 59.60 NC 33.60 EFP7GF -9.7139 0.71919 ECMLC 0.59488 -9.54849 0.97172 1600000 626794 0.001915 ECMGC 0.38408 -18.55376 -3.42959 1600000 133294 0.003001 ECMLI 0.53790 -9.03253 1.81366 1600000 410123 0.002926 ECMGI 0.40276 -14.32257 -0.84904 1600000 90953 0.004398 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 74 93 -7.095 -8.340 -0.069 -4.794 IL 1 1 2 1 4 1 14 76 95 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 16 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 62 - A - - MR 3 2 3 5 3 1 15 74 93 -8.573 -0.016 -6.891 1.803 -2.844 -2.429 -2.434 D 4 2 3 5 3 0 10 73 92 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 15 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 61 - C - - MR 6 5 3 8 3 1 15 73 92 -8.573 -0.016 -6.891 -2.313 1.748 -3.144 -1.613 D 7 5 3 8 3 0 9 72 91 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 14 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 60 - A - - MR 9 8 3 11 3 1 14 72 91 -8.573 -0.016 -6.891 1.803 -2.844 -2.429 -2.434 D 10 8 3 11 3 0 8 71 90 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 13 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 59 - U - - MR 12 11 3 14 3 1 13 71 90 -8.573 -0.016 -6.891 -1.926 -1.847 -2.678 1.724 D 13 11 3 14 3 0 7 70 89 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 12 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 58 - c - - MR 15 14 3 17 3 1 12 70 89 -8.573 -0.016 -6.891 -0.559 0.694 -0.751 0.150 D 16 14 3 17 3 0 6 69 87 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 11 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 57 - U - - MR 18 17 3 20 3 1 11 69 88 -2.436 -0.310 -6.891 -1.084 -0.334 -1.840 1.296 D 19 17 3 20 3 0 5 67 86 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 11 69 88 -2.684 -0.301 -4.923 0.000 0.000 0.000 0.000 [ MATR 7 ] - 55 - G - - MR 21 20 3 23 3 1 10 68 87 -8.573 -0.016 -6.891 -2.069 -3.359 1.814 -2.746 D 22 20 3 23 3 0 4 66 85 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 9 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 54 - A - - MR 24 23 3 26 3 1 10 67 86 -8.573 -0.016 -6.891 1.803 -2.844 -2.429 -2.434 D 25 23 3 26 3 0 4 65 84 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 8 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 53 - G - - MR 27 26 3 29 3 1 9 66 85 -8.573 -0.016 -6.891 -2.069 -3.359 1.814 -2.746 D 28 26 3 29 3 0 4 64 83 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 7 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 52 - C - - MR 30 29 3 32 3 1 8 65 84 -8.573 -0.016 -6.891 -2.313 1.748 -3.144 -1.613 D 31 29 3 32 3 0 3 63 82 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 7 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 51 - C - - MR 33 32 3 35 3 1 8 64 83 -8.573 -0.016 -6.891 -2.313 1.748 -3.144 -1.613 D 34 32 3 35 3 0 2 62 81 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 6 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 50 - G - - MR 36 35 3 38 3 1 7 63 82 -8.573 -0.016 -6.891 -2.069 -3.359 1.814 -2.746 D 37 35 3 38 3 0 2 61 80 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 5 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 49 - G - - MR 39 38 3 41 3 1 6 62 81 -8.573 -0.016 -6.891 -2.069 -3.359 1.814 -2.746 D 40 38 3 41 3 0 1 60 79 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 5 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 48 - C - - MR 42 41 3 44 3 1 6 61 80 -8.573 -0.016 -6.891 -2.313 1.748 -3.144 -1.613 D 43 41 3 44 3 0 1 59 78 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 5 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 47 - G - - MR 45 44 3 47 3 1 5 60 79 -8.573 -0.016 -6.891 -2.069 -3.359 1.814 -2.746 D 46 44 3 47 3 0 0 58 77 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 4 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 46 - C - - MR 48 47 3 50 3 1 5 59 78 -8.573 -0.016 -6.891 -2.313 1.748 -3.144 -1.613 D 49 47 3 50 3 0 0 57 76 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 3 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 45 - C - - MR 51 50 3 53 3 1 5 58 77 -8.573 -0.016 -6.891 -2.313 1.748 -3.144 -1.613 D 52 50 3 53 3 0 0 56 75 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 3 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 44 - C - - MR 54 53 3 56 5 1 4 57 76 -7.298 -0.034 -7.114 -7.326 -8.218 -2.313 1.748 -3.144 -1.613 D 55 53 3 56 5 0 0 56 74 -5.352 -0.707 -2.978 -4.409 -2.404 IR 56 56 3 56 5 1 2 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 1 43 u g - - MP 57 56 3 61 6 2 6 56 75 -9.208 -9.147 -0.020 -7.923 -8.203 -8.598 -4.220 -4.258 -3.945 -0.551 -2.681 -4.365 2.472 -3.473 -3.989 -0.381 -4.291 -2.356 0.815 -4.287 2.650 -2.851 ML 58 56 3 61 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 3 61 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 3 61 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 56 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 2 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 2 42 G C - - MP 63 62 6 67 6 2 5 54 73 -9.208 -9.147 -0.020 -7.923 -8.203 -8.598 -5.198 -3.315 -5.355 -0.113 -5.872 -4.867 -1.123 -5.620 -4.613 3.731 -4.920 -1.035 -1.497 -4.763 -3.187 -4.225 ML 64 62 6 67 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 54 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 3 41 G C - - MP 69 68 6 73 6 2 5 52 71 -9.208 -9.147 -0.020 -7.923 -8.203 -8.598 -5.198 -3.315 -5.355 -0.113 -5.872 -4.867 -1.123 -5.620 -4.613 3.731 -4.920 -1.035 -1.497 -4.763 -3.187 -4.225 ML 70 68 6 73 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 52 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 4 40 G C - - MP 75 74 6 79 6 2 4 50 69 -9.208 -9.147 -0.020 -7.923 -8.203 -8.598 -5.198 -3.315 -5.355 -0.113 -5.872 -4.867 -1.123 -5.620 -4.613 3.731 -4.920 -1.035 -1.497 -4.763 -3.187 -4.225 ML 76 74 6 79 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 50 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 5 39 C G - - MP 81 80 6 85 6 2 4 48 67 -9.208 -9.147 -0.020 -7.923 -8.203 -8.598 -4.131 -4.079 -3.916 -0.262 -2.698 -4.409 3.171 -3.460 -3.929 -0.049 -4.272 -2.029 1.754 -4.225 -0.358 -2.767 ML 82 80 6 85 6 1 1 47 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 48 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 6 38 c g - - MP 87 86 6 91 4 2 2 46 65 -7.095 -8.340 -0.069 -4.794 -3.598 -3.566 -3.546 0.156 -2.589 -4.190 2.414 -3.264 -3.545 0.347 -3.979 -1.570 2.383 -3.779 0.804 -2.438 ML 88 86 6 91 4 1 1 45 64 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 4 1 1 45 64 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 90 86 6 91 4 0 0 43 62 -12.737 -14.007 -2.036 -0.404 IL 91 91 5 91 4 1 1 45 64 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 92 92 6 92 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 37 - A - - MR 93 92 6 95 5 1 1 44 63 -7.298 -0.034 -7.114 -7.326 -8.218 1.803 -2.844 -2.429 -2.434 D 94 92 6 95 5 0 0 43 61 -5.352 -0.707 -2.978 -4.409 -2.404 IR 95 95 3 95 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 7 36 c g - - MP 96 95 3 100 6 2 2 43 62 -9.208 -9.147 -0.020 -7.923 -8.203 -8.598 -1.579 -0.647 -2.118 0.989 -2.115 -1.027 1.306 -2.171 -0.121 0.978 -1.828 1.273 0.987 -0.940 -0.242 -1.118 ML 97 95 3 100 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 3 100 6 1 1 42 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 3 100 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 43 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 8 35 G A - - MP 102 101 6 106 6 2 2 41 60 -9.208 -9.147 -0.020 -7.923 -8.203 -8.598 -4.118 -3.270 -4.060 0.369 -3.559 -5.103 0.698 -3.818 3.202 0.365 -4.349 -0.755 -0.065 -4.732 -1.257 -2.857 ML 103 101 6 106 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 9 34 A G - - MP 108 107 6 112 4 2 2 39 58 -7.197 -7.404 -0.045 -5.818 -4.124 -3.407 3.188 0.229 -3.342 -4.907 0.904 -3.739 -3.900 0.154 -4.330 -0.952 0.104 -4.616 -1.052 -2.850 ML 109 107 6 112 4 1 1 40 59 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 4 1 1 39 58 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 111 107 6 112 4 0 0 38 57 -4.568 -4.250 -2.265 -0.520 IL 112 112 5 112 4 1 1 41 60 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 113 113 6 113 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 10 - C - - - ML 114 113 6 116 3 1 1 36 54 -8.197 -0.018 -6.851 -2.313 1.748 -3.144 -1.613 D 115 113 6 116 3 0 0 35 54 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 11 - a - - - ML 117 116 3 119 3 1 1 35 53 -8.573 -0.016 -6.891 0.584 -0.485 -0.348 0.002 D 118 116 3 119 3 0 0 34 52 -5.620 -0.734 -1.403 IL 119 119 3 119 3 1 1 36 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 33 - U - - MR 120 119 3 122 3 1 1 34 52 -8.573 -0.016 -6.891 -1.926 -1.847 -2.678 1.724 D 121 119 3 122 3 0 0 32 51 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 35 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 32 - A - - MR 123 122 3 125 3 1 1 33 51 -8.573 -0.016 -6.891 1.803 -2.844 -2.429 -2.434 D 124 122 3 125 3 0 0 31 50 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 34 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 31 - a - - MR 126 125 3 128 3 1 1 32 50 -8.573 -0.016 -6.891 0.585 -0.929 -0.330 0.237 D 127 125 3 128 3 0 0 30 48 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 33 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 30 - G - - MR 129 128 3 131 3 1 1 31 49 -2.436 -0.310 -6.891 -2.069 -3.359 1.814 -2.746 D 130 128 3 131 3 0 0 29 47 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 31 49 -2.684 -0.301 -4.923 0.000 0.000 0.000 0.000 [ MATR 35 ] - 28 - a - - MR 132 131 3 134 5 1 1 29 48 -7.298 -0.034 -7.114 -7.326 -8.218 0.594 -0.932 -0.329 0.227 D 133 131 3 134 5 0 0 28 46 -5.352 -0.707 -2.978 -4.409 -2.404 IR 134 134 3 134 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 12 27 g c - - MP 135 134 3 139 6 2 2 28 47 -9.208 -9.147 -0.020 -7.923 -8.203 -8.598 -2.960 -2.288 -3.048 1.110 -3.295 -3.843 0.747 -0.092 -3.118 2.567 -3.573 1.176 0.477 -3.138 -1.075 -2.075 ML 136 134 3 139 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 3 139 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 3 139 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 13 26 C G - - MP 141 140 6 145 6 2 2 26 45 -9.208 -9.147 -0.020 -7.923 -8.203 -8.598 -5.064 -5.013 -4.664 -1.206 -3.279 -5.008 3.683 -4.140 -4.735 -1.028 -4.936 -2.972 0.177 -5.097 -1.002 -3.559 ML 142 140 6 145 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 14 25 C G - - MP 147 146 6 151 6 2 2 24 43 -9.208 -9.147 -0.020 -7.923 -8.203 -8.598 -5.064 -5.013 -4.664 -1.206 -3.279 -5.008 3.683 -4.140 -4.735 -1.028 -4.936 -2.972 0.177 -5.097 -1.002 -3.559 ML 148 146 6 151 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 15 24 G C - - MP 153 152 6 157 6 2 2 22 41 -9.208 -9.147 -0.020 -7.923 -8.203 -8.598 -5.198 -3.315 -5.355 -0.113 -5.872 -4.867 -1.123 -5.620 -4.613 3.731 -4.920 -1.035 -1.497 -4.763 -3.187 -4.225 ML 154 152 6 157 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 19 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 16 23 c g - - MP 159 158 6 163 4 2 2 20 39 -7.197 -2.242 -1.074 -1.705 -4.095 -4.111 -3.872 -0.387 -2.665 -4.340 2.819 -3.435 -3.903 -0.212 -4.235 -2.173 0.894 -4.189 2.148 -2.769 ML 160 158 6 163 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 162 158 6 163 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 163 163 5 163 4 1 1 21 39 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 164 164 6 164 3 1 1 19 38 -2.052 -0.470 -4.752 0.000 0.000 0.000 0.000 [ MATL 41 ] 17 - g - - - ML 165 164 6 167 3 1 1 17 36 -7.740 -0.024 -6.394 -0.219 -0.154 0.502 -0.275 D 166 164 6 167 3 0 0 16 35 -8.155 -0.277 -2.547 IL 167 167 3 167 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 18 - G - - - ML 168 167 3 170 3 1 1 16 35 -8.197 -0.018 -6.851 -0.175 -2.024 1.323 -1.449 D 169 167 3 170 3 0 0 16 34 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 19 - a - - - ML 171 170 3 173 3 1 1 15 33 -8.197 -0.018 -6.851 0.332 -0.942 0.065 0.232 D 172 170 3 173 3 0 0 15 33 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 20 - u - - - ML 174 173 3 176 3 1 1 13 31 -8.197 -0.018 -6.851 -0.905 0.588 -1.709 0.729 D 175 173 3 176 3 0 0 13 32 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 21 - u - - - ML 177 176 3 179 2 1 1 1 1 * 0.000 -0.441 0.350 -0.535 0.377 D 178 176 3 179 2 0 0 0 0 * 0.000 IL 179 179 3 179 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 180 179 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME PyrR210 ACC RF02808 DESC Pyrobaculum sRNA 210 LENG 59 MAXL 138 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Oct 25 14:04:45 2017 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 6 EFFN 3.401367 CKSUM 636403909 STATS LOCAL MSV -7.9435 0.71919 STATS LOCAL VITERBI -8.7492 0.71919 STATS LOCAL FORWARD -3.2787 0.71919 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.62931 1.18160 1.11716 1.77230 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 0.00000 * 1 3.18137 1.01853 3.00022 0.60226 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 2 2.88196 3.68683 0.11395 3.62616 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 3 2.88147 3.68615 0.11402 3.62524 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 4 2.88073 3.68512 0.11414 3.62384 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 5 2.91557 0.48869 2.68831 1.33030 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 6 2.57468 1.04135 2.34934 0.74357 6 u - - < 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 7 1.62747 1.57698 0.97438 1.51618 7 g - - < 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 8 2.51867 2.39229 0.28711 2.55638 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 9 0.32740 2.24670 2.44640 2.44358 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 10 3.38711 0.11874 3.95052 2.83174 10 C - - - 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 11 0.96281 1.73195 1.63016 1.40508 11 a - - - 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 12 1.89251 1.79556 0.56104 2.18343 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 13 3.66852 0.14972 3.49761 2.48573 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 14 3.66933 0.14966 3.49805 2.48588 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 15 2.87983 3.68386 0.11428 3.62214 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 16 3.05158 0.74483 2.85837 0.86622 16 c - - < 1.38629 1.38629 1.38629 1.38629 0.39964 4.10015 1.16197 1.46634 0.26236 1.09861 0.40547 17 1.61408 1.47851 0.96059 1.65925 17 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04824 3.74875 3.74875 1.46634 0.26236 0.10068 2.34572 18 1.55828 2.99273 0.40676 2.60983 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 19 1.15266 2.10893 1.31467 1.22324 19 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 20 2.16958 0.92044 2.74457 0.86002 20 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 21 1.77493 1.09240 1.76127 1.12928 21 c - - _ 1.38629 1.38629 1.38629 1.38629 0.27958 1.48137 4.10015 0.13990 2.03595 1.09861 0.40547 22 2.18544 3.01782 0.25018 2.81329 23 G - - > 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 23 3.80247 0.13692 3.53148 2.57198 24 C - - > 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 24 2.76929 3.66792 0.12814 3.44101 25 G - - > 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 25 2.77161 3.67156 0.12772 3.44512 26 G - - > 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 26 2.42660 0.87033 2.13551 0.98173 27 c - - > 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 27 0.95243 2.10165 1.61638 1.22646 28 a - - - 1.38629 1.38629 1.38629 1.38629 0.27958 1.48137 4.10015 0.13990 2.03595 1.09861 0.40547 28 3.14809 4.07958 0.08982 3.64763 30 G - - - 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 29 0.95916 2.09928 1.61659 1.21853 31 a - - - 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 30 0.09578 3.68986 3.37241 3.44042 32 A - - - 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 31 3.04064 2.93355 3.57198 0.13824 33 U - - - 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 32 2.72768 2.78450 0.25570 2.31772 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 33 0.34089 2.65503 2.22241 2.20532 35 A - - > 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 34 1.57330 1.47106 1.48732 1.08773 36 u - - > 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 35 0.09578 3.68986 3.37241 3.44042 37 A - - - 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 36 1.00457 2.52010 0.78196 2.34511 38 g - - > 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 37 1.48356 2.85405 0.43607 2.67377 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 38 3.80455 0.13680 3.53248 2.57236 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 39 3.81041 0.13646 3.53530 2.57344 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 40 3.81862 0.13599 3.53923 2.57495 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 41 2.25226 3.16192 0.22316 2.94686 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 42 3.38711 0.11874 3.95052 2.83174 44 C - - : 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 43 3.38711 0.11874 3.95052 2.83174 45 C - - : 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 44 3.38711 0.11874 3.95052 2.83174 46 C - - : 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 45 3.14809 4.07958 0.08982 3.64763 47 G - - : 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 46 3.38711 0.11874 3.95052 2.83174 48 C - - : 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 47 3.14809 4.07958 0.08982 3.64763 49 G - - : 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 48 3.14809 4.07958 0.08982 3.64763 50 G - - : 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 49 3.38711 0.11874 3.95052 2.83174 51 C - - : 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 50 3.38711 0.11874 3.95052 2.83174 52 C - - : 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 51 3.14809 4.07958 0.08982 3.64763 53 G - - : 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 52 0.09578 3.68986 3.37241 3.44042 54 A - - : 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 53 3.14809 4.07958 0.08982 3.64763 55 G - - : 1.38629 1.38629 1.38629 1.38629 0.27958 1.48137 4.10015 0.13990 2.03595 1.09861 0.40547 54 2.32454 1.64006 2.85532 0.42976 57 U - - : 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 55 1.87986 0.83734 1.93454 1.30919 58 c - - : 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 56 3.04064 2.93355 3.57198 0.13824 59 U - - : 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 57 0.09578 3.68986 3.37241 3.44042 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 58 3.38711 0.11874 3.95052 2.83174 61 C - - : 1.38629 1.38629 1.38629 1.38629 0.03370 4.10015 4.10015 1.46634 0.26236 1.09861 0.40547 59 0.09578 3.68986 3.37241 3.44042 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.01699 4.08345 * 1.46634 0.26236 0.00000 * //