# STOCKHOLM 1.0
#=GF ID PyrR210
#=GF AC RF02808
#=GF DE Pyrobaculum sRNA 210
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 59.0
#=GF NC 35.8
#=GF TC 59.6
#=GF SE Argasinska J
#=GF SS Predicted; 22282340
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF RN [1]
#=GF RM 22282340
#=GF RT Discovery of Pyrobaculum small RNA families with atypical pseudouridine
#=GF RT guide RNA features.
#=GF RA Bernick DL, Dennis PP, Hochsmann M, Lowe TM
#=GF RL RNA. 2012;18:402-411.
#=GF CC Non canonical pseudouridylation guide sRNA features. Predicted to target
#=GF CC tRNALys U54 in Pyrobaculum.
#=GF WK Archaeal_H/ACA_sRNA
#=GF SQ 6

AE009441.1/724028-724085   CGGGCUGGACUGCCGU-GGUC-GCGGCU-GAAUGAAAAGCCCGCCCGCGGCCGAG-UCUACA
CP001014.1/224637-224694   CGGGCUCGACCGCCGC-GUCU-GCGGCA-GUAUGACAGGCCCGCCCGCGGCCGAG-UCUACA
CP000504.1/1173049-1172992 UGGGCUUGACAGCCGC-GUCU-GCGGUU-GUAUGACAAGCCCGCCCGCGGCCGAG-UGUACA
CP003316.1/1875733-1875794 UGGGCCGGACAGCCGUGGAUCUGCGGCAGGAAUGAUAGGCCCGCCCGCGGCCGAGCUCUACA
CP000561.1/255861-255803   UGGGUUGGACGCCCGCCAGCG-GCGGUG-GGAUGAAAAACCCGCCCGCGGCCGAG-CUUACA
CP000660.1/262539-262478   UGGGCCGGACAGCCGUGGAUCUGCGGUAGGAAUGAUAGGCCCGCCCGCGGCCGAGCUCUACA
#=GC SS_cons               <<<<<<<<<--<<<<<_____.>>>>>-.---->>>->>>>>>::::::::::::.::::::
#=GC RF                    uGGGCucGACagCCGcgGauu.gCGGca.GaAUGAgAaGCCCgCCCGCGGCCGAG.UcUACA
//
