INFERNAL1/a [1.1.5 | Sep 2023] NAME PyrR209 ACC RF02807 DESC Pyrobaculum sRNA 209 STATES 199 NODES 53 CLEN 65 W 80 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 09:05:25 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02807/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 2.558594 CKSUM 3466867450 NULL 0.000 0.000 0.000 0.000 GA 42.00 TC 42.60 NC 37.90 EFP7GF -9.5918 0.71905 ECMLC 0.54183 -9.96610 1.78986 1600000 700709 0.001713 ECMGC 0.38697 -18.96447 -4.18133 1600000 122033 0.003278 ECMLI 0.56714 -7.07813 3.34828 1600000 443888 0.002703 ECMGI 0.41146 -13.94349 -1.02920 1600000 81244 0.004923 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 80 99 -7.185 -7.392 -0.045 -5.806 IL 1 1 2 1 4 1 19 84 104 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 19 83 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 18 80 99 -8.186 -0.018 -6.840 -2.047 -3.333 1.810 -2.720 D 4 2 3 5 3 0 14 78 98 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 18 82 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 17 79 98 -8.186 -0.018 -6.840 -2.047 -3.333 1.810 -2.720 D 7 5 3 8 3 0 13 77 97 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 17 81 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 1 16 78 97 -8.186 -0.018 -6.840 -2.286 1.743 -3.117 -1.591 D 10 8 3 11 3 0 12 76 96 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 16 80 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 15 76 96 -8.186 -0.018 -6.840 1.800 -2.821 -2.409 -2.409 D 13 11 3 14 3 0 11 75 95 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 15 79 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 15 75 95 -8.186 -0.018 -6.840 -2.047 -3.333 1.810 -2.720 D 16 14 3 17 3 0 10 74 93 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 14 78 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 1 14 74 93 -8.186 -0.018 -6.840 -2.047 -3.333 1.810 -2.720 D 19 17 3 20 3 0 10 73 92 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 13 77 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 13 73 92 -8.186 -0.018 -6.840 1.800 -2.821 -2.409 -2.409 D 22 20 3 23 3 0 9 72 91 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 13 76 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 12 72 91 -8.186 -0.018 -6.840 -1.905 -1.829 -2.656 1.719 D 25 23 3 26 3 0 8 71 90 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 12 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - C - - - ML 27 26 3 29 3 1 11 71 90 -8.563 -0.016 -6.880 -2.286 1.743 -3.117 -1.591 D 28 26 3 29 3 0 7 70 89 -5.620 -0.734 -1.403 IL 29 29 3 29 3 1 10 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 65 - A - - MR 30 29 3 32 3 1 10 70 89 -8.563 -0.016 -6.880 1.260 -1.685 -0.244 -1.156 D 31 29 3 32 3 0 5 68 87 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 10 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 64 - a - - MR 33 32 3 35 3 1 9 69 88 -8.563 -0.016 -6.880 0.625 -0.962 -1.165 0.583 D 34 32 3 35 3 0 5 67 86 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 9 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 63 - c - - MR 36 35 3 38 3 1 8 68 87 -8.563 -0.016 -6.880 0.024 0.938 -1.528 -0.473 D 37 35 3 38 3 0 4 66 85 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 8 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 62 - u - - MR 39 38 3 41 3 1 7 67 86 -8.563 -0.016 -6.880 -0.491 -1.082 0.461 0.526 D 40 38 3 41 3 0 3 65 84 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 7 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 61 - C - - MR 42 41 3 44 3 1 6 66 85 -8.563 -0.016 -6.880 -2.286 1.743 -3.117 -1.591 D 43 41 3 44 3 0 2 64 83 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 6 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 60 - a - - MR 45 44 3 47 3 1 5 65 84 -8.563 -0.228 -2.803 0.207 0.194 -0.186 -0.280 D 46 44 3 47 3 0 2 63 82 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 7 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 59 - a - - MR 48 47 3 50 3 1 8 64 83 -8.354 -0.019 -6.672 0.892 -0.957 -1.072 0.206 D 49 47 3 50 3 0 1 62 81 -7.590 -2.768 -0.238 IR 50 50 3 50 3 1 6 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 58 - a - - MR 51 50 3 53 3 1 7 63 82 -8.354 -0.019 -6.672 0.938 -0.174 -1.108 -0.446 D 52 50 3 53 3 0 1 61 80 -7.590 -2.768 -0.238 IR 53 53 3 53 3 1 6 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 57 - a - - MR 54 53 3 56 3 1 6 62 81 -8.354 -0.019 -6.672 0.844 -0.933 -1.061 0.266 D 55 53 3 56 3 0 1 60 79 -7.590 -2.768 -0.238 IR 56 56 3 56 3 1 5 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 56 - a - - MR 57 56 3 59 3 1 5 61 80 -8.354 -0.019 -6.672 0.895 -0.109 -1.101 -0.421 D 58 56 3 59 3 0 1 60 79 -7.590 -0.491 -1.820 IR 59 59 3 59 3 1 4 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 55 - u - - MR 60 59 3 62 3 1 5 60 79 -8.563 -0.016 -6.880 -0.891 0.511 -1.689 0.787 D 61 59 3 62 3 0 0 59 78 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 3 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 54 - a - - MR 63 62 3 65 3 1 4 59 78 -8.563 -0.016 -6.880 0.625 -0.962 -1.165 0.583 D 64 62 3 65 3 0 0 58 77 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 3 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 53 - G - - MR 66 65 3 68 3 1 4 58 77 -8.563 -0.016 -6.880 -2.047 -3.333 1.810 -2.720 D 67 65 3 68 3 0 0 57 76 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 2 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 52 - G - - MR 69 68 3 71 3 1 3 57 76 -8.563 -0.016 -6.880 -2.047 -3.333 1.810 -2.720 D 70 68 3 71 3 0 0 56 75 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 2 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 51 - C - - MR 72 71 3 74 3 1 3 56 75 -8.563 -0.016 -6.880 -2.286 1.743 -3.117 -1.591 D 73 71 3 74 3 0 0 55 74 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 2 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 50 - C - - MR 75 74 3 77 5 1 2 55 74 -7.289 -0.034 -7.104 -7.316 -8.208 -2.286 1.743 -3.117 -1.591 D 76 74 3 77 5 0 0 54 73 -5.352 -0.707 -2.978 -4.409 -2.404 IR 77 77 3 77 5 1 1 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 10 49 g c - - MP 78 77 3 82 6 2 3 54 73 -9.203 -9.142 -0.020 -7.918 -8.198 -8.593 -3.078 0.295 -3.168 1.706 -3.616 -3.900 0.464 -3.536 -3.219 2.473 -3.631 1.027 0.221 -3.224 -1.343 -2.172 ML 79 77 3 82 6 1 1 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 3 82 6 1 1 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 3 82 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 11 48 G C - - MP 84 83 6 88 6 2 3 52 71 -9.203 -9.142 -0.020 -7.918 -8.198 -8.593 -5.177 -3.304 -5.330 -0.098 -5.843 -4.859 -1.099 -5.594 -4.600 3.727 -4.908 -1.024 -1.473 -4.750 -3.161 -4.200 ML 85 83 6 88 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 51 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 51 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 12 47 C G - - MP 90 89 6 94 6 2 3 50 69 -9.203 -9.142 -0.020 -7.918 -8.198 -8.593 -4.094 -4.087 -3.877 -0.324 -2.665 -4.355 3.127 -3.432 -3.900 -0.138 -4.237 -2.106 0.934 -4.189 1.383 -2.755 ML 91 89 6 94 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 49 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 13 46 C G - - MP 96 95 6 100 6 2 3 48 67 -9.203 -9.142 -0.020 -7.918 -8.198 -8.593 -5.039 -4.987 -4.644 -1.181 -3.263 -4.991 3.678 -4.122 -4.713 -1.000 -4.917 -2.944 0.196 -5.074 -0.985 -3.538 ML 97 95 6 100 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 47 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 14 45 C G - - MP 102 101 6 106 6 2 3 46 65 -9.203 -9.142 -0.020 -7.918 -8.198 -8.593 -4.038 -3.981 -3.852 -0.171 -2.672 -4.371 3.063 -3.420 -3.860 0.044 -4.219 -1.930 1.943 -4.146 -0.331 -2.704 ML 103 101 6 106 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 15 44 C G - - MP 108 107 6 112 4 2 2 44 63 -7.084 -8.329 -0.069 -4.783 -5.039 -4.987 -4.644 -1.181 -3.263 -4.991 3.678 -4.122 -4.713 -1.000 -4.917 -2.944 0.196 -5.074 -0.985 -3.538 ML 109 107 6 112 4 1 1 44 63 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 4 1 1 43 62 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 111 107 6 112 4 0 0 41 60 -12.737 -14.007 -2.036 -0.404 IL 112 112 5 112 4 1 1 44 63 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 113 113 6 113 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 43 - A - - MR 114 113 6 116 5 1 1 42 61 -7.289 -0.034 -7.104 -7.316 -8.208 1.241 -1.674 -0.203 -1.141 D 115 113 6 116 5 0 0 41 60 -5.352 -0.707 -2.978 -4.409 -2.404 IR 116 116 3 116 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 16 42 c g - - MP 117 116 3 121 6 2 2 41 60 -9.203 -9.142 -0.020 -7.918 -8.198 -8.593 -1.596 -1.790 -0.322 1.417 -0.303 -2.638 1.445 -2.126 -1.855 1.011 -0.438 -0.437 1.304 -1.929 0.005 -1.046 ML 118 116 3 121 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 3 121 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 3 121 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 17 41 G A - - MP 123 122 6 127 6 2 2 39 58 -9.203 -9.142 -0.020 -7.918 -8.198 -8.593 -4.096 -3.255 -4.040 0.382 -3.541 -5.079 0.713 -3.801 3.190 0.385 -4.331 -0.744 -0.047 -4.705 -1.241 -2.840 ML 124 122 6 127 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 18 40 A G - - MP 129 128 6 133 4 2 2 37 56 -7.185 -7.392 -0.045 -5.806 -4.099 -3.390 3.176 0.244 -3.325 -4.884 0.918 -3.722 -3.880 0.175 -4.312 -0.940 0.122 -4.587 -1.037 -2.831 ML 130 128 6 133 4 1 1 38 57 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 4 1 1 37 57 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 132 128 6 133 4 0 0 36 56 -4.568 -4.250 -2.265 -0.520 IL 133 133 5 133 4 1 1 39 58 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 134 134 6 134 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 19 - G - - - ML 135 134 6 137 3 1 1 34 53 -8.186 -0.018 -6.840 -2.047 -3.333 1.810 -2.720 D 136 134 6 137 3 0 0 33 52 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 20 - a - - - ML 138 137 3 140 3 1 1 33 52 -8.563 -0.016 -6.880 0.574 -0.209 -1.081 0.231 D 139 137 3 140 3 0 0 32 51 -5.620 -0.734 -1.403 IL 140 140 3 140 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 39 - U - - MR 141 140 3 143 3 1 1 32 51 -8.563 -0.016 -6.880 -1.905 -1.829 -2.656 1.719 D 142 140 3 143 3 0 0 31 49 -6.390 -1.568 -0.620 IR 143 143 3 143 3 1 1 33 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 38 - a - - MR 144 143 3 146 3 1 1 31 50 -8.563 -0.016 -6.880 0.789 -1.596 0.534 -1.019 D 145 143 3 146 3 0 0 30 48 -6.390 -1.568 -0.620 IR 146 146 3 146 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 37 - U - - MR 147 146 3 149 3 1 1 30 49 -8.563 -0.016 -6.880 -1.905 -1.829 -2.656 1.719 D 148 146 3 149 3 0 0 29 47 -6.390 -1.568 -0.620 IR 149 149 3 149 3 1 1 31 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 36 - C - - MR 150 149 3 152 3 1 1 29 48 -8.563 -0.016 -6.880 -2.286 1.743 -3.117 -1.591 D 151 149 3 152 3 0 0 28 46 -6.390 -1.568 -0.620 IR 152 152 3 152 3 1 1 30 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 35 - C - - MR 153 152 3 155 5 1 1 28 47 -7.289 -0.034 -7.104 -7.316 -8.208 -2.286 1.743 -3.117 -1.591 D 154 152 3 155 5 0 0 27 46 -5.352 -0.707 -2.978 -4.409 -2.404 IR 155 155 3 155 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 21 34 c g - - MP 156 155 3 160 6 2 2 27 46 -9.203 -9.142 -0.020 -7.918 -8.198 -8.593 -3.638 -3.304 -3.596 0.431 -2.799 -4.286 2.807 -3.387 -3.596 1.769 -4.033 -1.122 1.064 -3.793 -0.432 -2.454 ML 157 155 3 160 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 3 160 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 3 160 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 22 33 G C - - MP 162 161 6 166 6 2 2 25 44 -9.203 -9.142 -0.020 -7.918 -8.198 -8.593 -5.177 -3.304 -5.330 -0.098 -5.843 -4.859 -1.099 -5.594 -4.600 3.727 -4.908 -1.024 -1.473 -4.750 -3.161 -4.200 ML 163 161 6 166 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 23 32 G C - - MP 168 167 6 172 6 2 2 23 42 -9.203 -9.142 -0.020 -7.918 -8.198 -8.593 -5.177 -3.304 -5.330 -0.098 -5.843 -4.859 -1.099 -5.594 -4.600 3.727 -4.908 -1.024 -1.473 -4.750 -3.161 -4.200 ML 169 167 6 172 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 171 167 6 172 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 172 172 5 172 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 173 173 6 173 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 24 31 C G - - MP 174 173 6 178 6 2 2 21 40 -9.203 -9.142 -0.020 -7.918 -8.198 -8.593 -5.039 -4.987 -4.644 -1.181 -3.263 -4.991 3.678 -4.122 -4.713 -1.000 -4.917 -2.944 0.196 -5.074 -0.985 -3.538 ML 175 173 6 178 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 6 178 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 6 178 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 178 178 5 178 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 25 30 C G - - MP 180 179 6 184 4 2 2 19 38 -7.185 -7.392 -0.045 -5.806 -3.682 -3.686 -3.637 -0.298 -2.800 0.473 3.252 -3.475 -3.683 -0.086 -4.071 -1.936 0.661 -3.875 -0.607 -2.667 ML 181 179 6 184 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 183 179 6 184 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 184 184 5 184 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 185 185 6 185 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 26 - G - - - ML 186 185 6 188 3 1 1 16 35 -8.186 -0.018 -6.840 -2.047 -3.333 1.810 -2.720 D 187 185 6 188 3 0 0 16 34 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 27 - g - - - ML 189 188 3 191 3 1 1 15 33 -8.186 -0.263 -2.615 0.165 -1.039 0.436 0.055 D 190 188 3 191 3 0 0 14 33 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 28 - a - - - ML 192 191 3 194 3 1 1 13 31 -7.944 -0.295 -2.466 0.997 -1.380 0.070 -0.811 D 193 191 3 194 3 0 0 12 31 -7.589 -0.432 -1.981 IL 194 194 3 194 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 29 - c - - - ML 195 194 3 197 2 1 1 1 1 * 0.000 -0.429 0.639 -0.175 -0.297 D 196 194 3 197 2 0 0 0 0 * 0.000 IL 197 197 3 197 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 52 ] - - - - - - E 198 197 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME PyrR209 ACC RF02807 DESC Pyrobaculum sRNA 209 LENG 65 MAXL 146 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 09:05:25 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02807/CM NSEQ 4 EFFN 3.410156 CKSUM 3466867450 STATS LOCAL MSV -8.1282 0.71905 STATS LOCAL VITERBI -8.8322 0.71905 STATS LOCAL FORWARD -3.7787 0.71905 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.61012 1.21706 1.08720 1.79049 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 0.00000 * 1 3.15121 4.08303 0.08951 3.65097 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 2 3.15121 4.08303 0.08951 3.65097 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 3 3.39093 0.11830 3.95412 2.83495 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 4 0.09545 3.69312 3.37540 3.44400 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 5 3.15121 4.08303 0.08951 3.65097 5 G - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 6 3.15121 4.08303 0.08951 3.65097 6 G - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 7 0.09545 3.69312 3.37540 3.44400 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 8 3.04381 2.93621 3.57523 0.13780 8 U - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 9 3.39093 0.11830 3.95412 2.83495 9 C - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 10 1.15186 2.46202 0.69678 2.29755 10 g - - < 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 11 2.88346 3.68901 0.11373 3.62804 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 12 3.00791 0.50970 2.80270 1.24034 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 13 3.67367 0.14909 3.50239 2.48896 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 14 2.85916 0.56052 2.62864 1.20533 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 15 3.67035 0.14931 3.50061 2.48833 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 16 1.32197 1.40667 1.44253 1.37791 16 a - - < 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 17 2.52045 2.39440 0.28643 2.55862 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 18 0.32656 2.24875 2.44860 2.44581 18 A - - < 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 19 3.15121 4.08303 0.08951 3.65097 19 G - - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 20 0.96131 1.52160 2.21506 1.23754 20 a - - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 21 2.42776 0.70926 1.40147 1.75145 21 c - - < 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 22 2.88433 3.69022 0.11360 3.62967 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 23 2.88377 3.68944 0.11369 3.62862 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 24 3.67456 0.14903 3.50287 2.48913 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 25 2.96026 0.29211 2.76194 1.97805 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 26 3.15121 4.08303 0.08951 3.65097 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 27 1.28748 2.19259 1.03151 1.36282 27 g - - _ 1.38629 1.38629 1.38629 1.38629 0.22754 4.10998 1.67613 1.46634 0.26236 1.09861 0.40547 28 0.64527 2.48677 1.30983 2.10018 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.26354 3.92282 1.55171 1.46634 0.26236 0.16161 1.90231 29 1.80196 0.85404 1.48916 1.69406 29 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03982 3.93644 3.93644 1.46634 0.26236 0.17122 1.84918 30 2.25066 1.76476 0.41735 2.73878 30 G - - > 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 31 2.77127 3.67030 0.12786 3.44294 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 32 3.81358 0.13608 3.53864 2.57562 32 C - - > 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 33 3.82187 0.13561 3.54261 2.57714 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 34 2.00143 1.48735 0.64232 2.18200 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 35 3.39093 0.11830 3.95412 2.83495 35 C - - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 36 3.39093 0.11830 3.95412 2.83495 36 C - - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 37 3.04381 2.93621 3.57523 0.13780 37 U - - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 38 0.80028 2.68086 0.96439 2.29188 38 a - - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 39 3.04381 2.93621 3.57523 0.13780 39 U - - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 40 2.72994 2.78694 0.25508 2.31961 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 41 0.34005 2.65748 2.22453 2.20708 41 A - - > 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 42 1.41091 1.81658 1.08851 1.35954 42 g - - > 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 43 0.47104 2.74299 1.51473 2.39245 43 A - - - 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 44 2.76872 3.66631 0.12832 3.43844 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 45 1.34149 2.79561 0.50324 2.61869 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 46 2.77102 3.66990 0.12790 3.44249 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 47 2.16033 2.96567 0.26075 2.76916 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 48 3.82061 0.13568 3.54201 2.57691 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 49 2.54394 0.80021 2.26809 0.99778 49 c - - > 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 50 3.39093 0.11830 3.95412 2.83495 50 C - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 51 3.39093 0.11830 3.95412 2.83495 51 C - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 52 3.15121 4.08303 0.08951 3.65097 52 G - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 53 3.15121 4.08303 0.08951 3.65097 53 G - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 54 0.92052 2.15361 2.29351 0.95526 54 a - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 55 2.16791 0.97409 2.73855 0.81332 55 u - - : 1.38629 1.38629 1.38629 1.38629 0.21144 4.10998 1.74771 1.46634 0.26236 1.09861 0.40547 56 0.71268 1.43734 2.26241 1.78370 56 a - - : 1.38629 1.38629 1.38629 1.38629 0.03974 3.93828 3.93828 1.46634 0.26236 2.53489 0.08259 57 0.75886 2.11568 2.21061 1.19860 57 a - - : 1.38629 1.38629 1.38629 1.38629 0.03974 3.93828 3.93828 1.46634 0.26236 2.53489 0.08259 58 0.68086 1.48789 2.26896 1.80455 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.03974 3.93828 3.93828 1.46634 0.26236 2.53489 0.08259 59 0.72314 2.13436 2.22096 1.24497 59 a - - : 1.38629 1.38629 1.38629 1.38629 0.03974 3.93828 3.93828 1.46634 0.26236 0.17262 1.84174 60 1.25314 1.20605 1.49647 1.65497 60 c - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 61 3.39093 0.11830 3.95412 2.83495 61 C - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 62 1.83591 2.25307 1.00491 0.99594 62 u - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 63 1.40083 0.64743 2.62966 1.84444 63 C - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 64 0.92052 2.15361 2.29351 0.95526 64 a - - : 1.38629 1.38629 1.38629 1.38629 0.03337 4.10998 4.10998 1.46634 0.26236 1.09861 0.40547 65 0.45770 2.75168 1.54601 2.40414 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.01682 4.09343 * 1.46634 0.26236 0.00000 * //