# STOCKHOLM 1.0
#=GF ID PyrR209
#=GF AC RF02807
#=GF DE Pyrobaculum sRNA 209
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 42.0
#=GF NC 37.9
#=GF TC 42.6
#=GF SE Argasinska J
#=GF SS Predicted; 22282340
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF RN [1]
#=GF RM 22282340
#=GF RT Discovery of Pyrobaculum small RNA families with atypical pseudouridine
#=GF RT guide RNA features.
#=GF RA Bernick DL, Dennis PP, Hochsmann M, Lowe TM
#=GF RL RNA. 2012;18:402-411.
#=GF CC Non canonical pseudouridylation guide sRNA features. Predicted to target
#=GF CC 16S U8 in Pyrobaculum.
#=GF WK Archaeal_H/ACA_sRNA
#=GF SQ 4

AE009441.1/679548-679612   GGCAGGAUCAGCCCCAGAGCCGGCCGGACGGCCGCCUGUGAUAGGGGCCCCGGUCAAAACCUCUG
CP000504.1/1203366-1203303 GGCAGGAUCAGUCCCCGAGACGGCCGUA-GGCCGCCUAUGAAAGGGGCUCCGGACAACUACGCAA
CP001014.1/195466-195529   GGCAGGAUCGGCCUCGGAGUGGGCCGG-CGGCCCCCUAUGAGAGAGGCCCCGGAUCUAAGCGAAA
CP000660.1/200535-200475   GGCAGGAUCGGCCCCAGAGACGGCCGAGGCGCCGCCUGUGAGGGGGGCUCCGGUU----CCUCUA
#=GC SS_cons               :::::::::<<<<<<<<<--<<<<<____>>>>>----->>>->>>>>>::::::::::::::::
#=GC RF                    GGCAGGAUCgGCCCCcGAGacGGCCGgacGGCCgCCUaUGAgAGGGGCcCCGGauaaaaaCucaA
//
